Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 7.9e-100 367.1 181 100.0
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-99 366.7 180 100.0
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-98 363.2 178 100.0
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-87 326.2 180 89.4
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.7e-86 322.8 180 88.9
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.9e-86 322.0 180 88.3
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-85 318.9 180 87.8
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-85 318.2 180 87.8
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-85 318.2 180 87.8
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 7.2e-85 317.4 180 87.8
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 2.1e-84 315.8 180 87.2
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 2.1e-84 315.8 180 87.2
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 2.1e-84 315.8 180 87.2
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 2.3e-83 312.4 182 86.8
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 5.1e-83 311.2 194 82.0
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-81 305.8 180 86.7
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-70 269.2 177 73.4
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 7.2e-69 264.2 177 75.1
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 7.2e-69 264.2 177 75.1
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 7.2e-69 264.2 177 75.1
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 7.2e-69 264.2 177 75.1
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 9.4e-69 263.8 177 75.1
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 9.4e-69 263.8 177 72.9
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 9.4e-69 263.8 176 75.6
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.2e-68 263.5 176 75.0
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.1e-68 262.7 176 74.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.7e-68 262.3 177 74.0
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-68 262.3 176 75.0
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 2.7e-68 262.3 177 71.2
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 3.6e-68 261.9 177 72.3
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-68 261.5 176 75.0
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 4.7e-68 261.5 176 74.4
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 6.1e-68 261.2 177 71.2
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 8.0e-68 260.8 176 74.4
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 8.0e-68 260.8 178 73.0
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.0e-67 260.4 176 73.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-66 256.5 176 72.7
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-66 255.0 176 73.3
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-66 255.0 176 72.7
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.7e-65 253.1 179 68.7
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.7e-65 253.1 179 68.7
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.7e-65 253.1 176 72.7
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.8e-65 252.3 178 71.3
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 4.8e-65 251.5 179 65.9
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 4.8e-65 251.5 179 65.9
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 6.3e-65 251.1 177 68.9
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.1e-64 250.4 179 68.2
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.1e-64 250.4 177 68.9
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.4e-64 250.0 179 68.2
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.4e-64 250.0 179 68.2
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-64 250.0 179 68.2
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.4e-64 250.0 179 67.6
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.4e-64 250.0 179 68.2
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.8e-64 249.6 179 68.7
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.8e-64 249.6 179 68.2
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.4e-64 249.2 179 67.6
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 3.1e-64 248.8 179 67.6
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 3.1e-64 248.8 178 71.9
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 3.1e-64 248.8 179 67.6
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.1e-64 248.8 179 67.6
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 4.1e-64 248.4 179 67.0
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 5.3e-64 248.1 179 67.0
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 7.0e-64 247.7 179 68.2
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 7.0e-64 247.7 179 68.2
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 7.0e-64 247.7 179 67.0
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 7.0e-64 247.7 179 68.2
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 67.0
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 67.0
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 68.2
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 67.6
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 67.6
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 67.6
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 9.1e-64 247.3 179 67.6
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.2e-63 246.9 178 68.0
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.2e-63 246.9 179 66.5
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.2e-63 246.9 179 67.6
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.6e-63 246.5 179 66.5
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 2.0e-63 246.1 164 74.4
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.0e-63 246.1 179 67.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.0e-63 246.1 179 67.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 2.6e-63 245.7 177 67.8
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.6e-63 245.7 177 67.2
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.5e-63 245.4 177 66.7
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 3.5e-63 245.4 179 67.6
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 3.5e-63 245.4 179 65.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 4.5e-63 245.0 179 67.0
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 4.5e-63 245.0 179 65.4
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 5.9e-63 244.6 177 66.7
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 5.9e-63 244.6 177 65.5
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 5.9e-63 244.6 176 67.6
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 7.7e-63 244.2 179 65.9
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 7.7e-63 244.2 179 67.0
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.3e-62 243.4 179 64.8
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.3e-62 243.4 177 67.8
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.7e-62 243.0 179 66.5
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.2e-62 242.7 179 65.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 2.9e-62 242.3 179 64.8
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.9e-62 242.3 178 67.4
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 2.9e-62 242.3 179 66.5
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 2.9e-62 242.3 179 63.7
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 5.0e-62 241.5 177 65.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 5.0e-62 241.5 178 64.6
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 5.0e-62 241.5 184 66.3
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 6.5e-62 241.1 177 66.7
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 6.5e-62 241.1 179 65.4
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 6.5e-62 241.1 177 65.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 6.5e-62 241.1 177 66.1
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.1e-61 240.4 179 64.8
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.1e-61 240.4 177 65.5
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.9e-61 239.6 221 58.8
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.9e-61 239.6 177 64.4
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 3.2e-61 238.8 179 64.2
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 4.2e-61 238.4 179 64.2
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 4.2e-61 238.4 179 63.7
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 5.5e-61 238.0 177 65.0
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.2e-61 237.7 178 64.0
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.2e-61 237.7 178 64.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 7.2e-61 237.7 177 65.0
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 7.2e-61 237.7 179 63.7
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.4e-61 237.3 176 64.8
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.6e-60 236.5 177 64.4
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.6e-60 236.5 176 64.8
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.6e-60 236.5 179 64.8
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.7e-60 235.7 179 64.2
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.6e-60 235.3 177 65.0
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 3.6e-60 235.3 176 64.8
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 4.7e-60 235.0 176 64.8
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.0e-59 233.8 179 63.7
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.4e-59 233.4 177 63.3
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-59 233.0 160 71.9
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.8e-59 233.0 177 62.1
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 5.7e-58 228.0 178 60.1
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.7e-57 226.5 178 60.1
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.2e-57 226.1 169 63.9
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 6.3e-57 224.6 190 61.1
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.5e-55 218.8 179 59.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.9e-55 218.0 177 58.2
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.0e-54 217.2 179 55.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.3e-54 216.9 179 62.0
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.3e-54 216.9 192 59.4
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.5e-53 213.4 179 60.3
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-53 213.0 171 66.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 4.2e-53 211.8 178 58.4
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.5e-53 211.5 179 54.2
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.6e-52 209.9 179 60.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.6e-52 209.9 165 61.8
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.0e-48 194.5 175 59.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 7.0e-48 194.5 139 63.3
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.9e-46 189.1 177 58.2
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 2.9e-46 189.1 139 62.6
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.7e-44 181.8 153 59.5
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.5e-42 176.8 157 57.3
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.0e-42 176.4 178 50.6
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 4.4e-42 175.3 173 52.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 5.7e-42 174.9 179 53.6
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 2.4e-40 169.5 182 50.0
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 4.5e-39 165.2 202 46.0
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 2.3e-38 162.9 92 84.8
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.9e-37 159.8 122 64.8
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.4e-35 153.7 108 68.5
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.8e-34 148.3 178 46.6
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.3e-33 147.1 183 43.7
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 1.7e-33 146.7 146 51.4
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 8.6e-30 134.4 180 42.2
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.1e-29 134.0 107 58.9
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 5.6e-29 131.7 171 42.1
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 2.4e-24 116.3 79 65.8
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 9.2e-24 114.4 181 41.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.6e-23 113.6 175 40.6
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.1e-22 108.6 104 51.0
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.9e-21 106.7 178 39.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.8e-20 102.8 109 51.4
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.4e-19 100.5 72 72.2
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.7e-17 92.4 70 67.1
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.1e-16 89.0 72 65.3
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.6e-15 85.5 177 33.9
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 5.2e-11 72.0 81 49.4
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.0e-06 56.2 46 63.0
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 3.9e-06 55.8 37 67.6


User provided reference genes

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