Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1618.6 798 100.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1569.7 798 96.5
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1569.3 798 96.2
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1560.8 799 95.7
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1559.3 799 95.9
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1536.9 800 95.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1526.5 798 94.0
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1514.6 798 93.0
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1514.6 798 93.0
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1511.5 798 92.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1511.1 798 92.6
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1508.4 799 92.7
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1505.7 799 92.7
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1505.0 799 92.4
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1478.0 797 90.1
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1477.2 797 90.0
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1449.5 798 88.0
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1390.2 854 81.0
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1372.8 757 88.6
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1346.3 812 79.9
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 808 77.0
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 806 76.7
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 808 77.1
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 808 77.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 806 77.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1280.4 806 76.1
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 806 76.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 808 77.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 809 75.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 808 76.9
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 808 76.7
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 807 76.1
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 811 76.1
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 806 76.6
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 808 75.2
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 807 75.2
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 806 76.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 817 75.3
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 806 76.6
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 806 75.6
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 808 75.9
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 807 75.0
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 806 76.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 811 75.8
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 805 74.9
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 807 75.6
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 810 74.7
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 811 74.7
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 807 74.5
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 806 75.6
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 807 75.1
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 804 75.1
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 811 74.4
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 808 74.8
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1250.0 805 74.8
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 801 75.5
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 805 75.3
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 803 74.5
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 805 74.8
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1245.3 803 75.1
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 805 74.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 811 74.0
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 806 74.9
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 809 74.9
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 806 74.8
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 811 73.4
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1224.9 804 73.5
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1219.1 804 73.3
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 798 73.2
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 805 74.0
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1207.6 882 67.7
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 807 72.6
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1202.2 812 72.9
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 801 72.7
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 807 72.0
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 796 72.5
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1192.2 828 71.3
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1191.4 811 72.1
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 804 71.4
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1185.6 804 71.1
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1184.5 805 71.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 808 71.5
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 804 71.1
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1181.0 799 71.8
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1176.8 801 71.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1174.1 807 71.0
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 800 71.1
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 804 69.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1161.4 868 67.2
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1157.1 803 70.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1156.4 805 70.7
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 804 69.7
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1155.2 857 66.2
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1152.1 786 72.4
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1150.2 805 69.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1149.4 806 71.8
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1147.5 803 69.0
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1142.1 804 68.4
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1139.0 800 69.5
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1130.2 801 69.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1116.7 809 68.1
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1113.2 818 67.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1107.4 911 62.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1105.1 811 67.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 962 59.5
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1081.2 812 66.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1079.7 802 66.0
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1077.8 962 59.3
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1075.1 775 67.9
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 6.0e-309 1063.9 823 63.9
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.4e-296 1021.5 805 63.9
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.2e-287 992.3 794 62.0
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 7.8e-285 983.8 812 62.9
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 6.9e-265 917.5 802 58.9
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 6.5e-263 911.0 606 72.8
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 4.7e-229 798.5 776 56.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.4e-193 680.6 853 45.1
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.3e-175 620.9 381 77.4
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 9.6e-166 588.2 829 41.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.6e-149 534.3 941 35.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.7e-149 533.1 802 41.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.1e-148 531.6 842 38.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.7e-120 437.2 418 55.5
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 6.3e-109 399.4 316 61.4
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.4e-100 371.7 349 58.2
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.0e-98 363.2 244 69.3
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.5e-89 335.1 237 72.2
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.2e-72 278.9 199 67.8
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.3e-66 258.8 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.5e-49 201.4 303 41.3
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.9e-47 193.4 141 71.6
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 8.4e-45 186.4 190 56.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 3.4e-38 164.5 263 40.7
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.5e-36 157.1 90 80.0
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.5e-33 149.1 103 68.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.1e-31 142.9 133 50.4
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.5e-29 133.7 100 69.0
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.1e-28 132.9 191 43.5
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.4e-28 132.5 120 60.8
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.5e-28 131.7 113 51.3
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.2e-28 131.0 104 57.7
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 5.5e-28 130.6 190 43.2
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.3e-28 129.8 79 79.7
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.8e-26 125.6 118 55.9
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.4e-23 115.9 170 41.8
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.4e-23 115.2 259 31.7
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.4e-22 111.3 115 51.3
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 6.1e-19 100.5 69 68.1
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.0e-17 95.5 58 75.9
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 9.7e-17 93.2 73 67.1
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 6.3e-16 90.5 50 82.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.1e-15 87.8 43 86.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.3e-13 82.8 143 44.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.2e-13 82.0 68 58.8
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 5.5e-12 77.4 434 22.1
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.1e-11 75.5 129 38.0
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.6e-11 74.7 60 51.7
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 4.7e-11 74.3 460 21.3
Aqoxy7G03324 Aquilegia oxysepala HOM05D000344 ORTHO05D003478 6.3e-08 63.9 423 20.8
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 6.3e-08 63.9 68 52.9
Lsat_1_v5_gn_3_22740 Lactuca sativa HOM05D000344 ORTHO05D003478 1.4e-07 62.8 466 21.7
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.4e-07 62.8 57 54.4
MSTRG.13963 Avicennia marina HOM05D000344 ORTHO05D003478 1.8e-07 62.4 417 21.8
CAN.G273.18 Capsicum annuum HOM05D000344 ORTHO05D003478 2.6e-06 58.5 400 22.0
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 4.5e-06 57.8 276 23.9
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 5.9e-06 57.4 278 22.7
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.7e-06 57.0 57 52.6


User provided reference genes

Program Settings