Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 9.5e-201 704.1 630 100.0
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 6.8e-183 644.8 635 96.1
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 1.1e-180 637.5 635 95.6
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 1.4e-180 637.1 635 95.4
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 4.6e-179 632.1 636 95.3
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 4.6e-179 632.1 636 95.3
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 2.9e-165 586.3 647 90.6
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 5.6e-161 572.0 652 89.1
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 3.3e-153 546.2 652 87.7
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.1e-148 531.2 653 86.2
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 2.7e-147 526.6 647 86.6
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.3e-133 481.1 659 80.4
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 1.8e-111 407.5 630 77.1
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 7.0e-95 352.4 271 76.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 1.4e-87 328.2 567 76.2
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 9.2e-87 325.5 621 71.3
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.7e-86 323.9 620 71.1
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.5e-86 323.6 562 76.9
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 3.5e-86 323.6 620 71.1
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 4.5e-86 323.2 645 69.1
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 5.9e-86 322.8 581 75.0
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 5.9e-86 322.8 629 70.4
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 1.3e-85 321.6 590 73.9
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.3e-85 321.6 624 71.2
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 2.3e-85 320.9 600 72.0
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 5.0e-85 319.7 644 69.1
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 8.6e-85 318.9 567 77.4
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 8.6e-85 318.9 567 77.6
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.9e-84 317.8 628 69.7
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 2.5e-84 317.4 651 68.8
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 2.5e-84 317.4 565 75.8
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 3.6e-83 313.5 585 72.3
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 4.7e-83 313.2 565 75.2
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.0e-82 312.0 577 74.9
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 1.0e-82 312.0 581 73.8
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.8e-82 311.2 644 68.6
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 2.3e-82 310.8 598 72.2
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 3.0e-82 310.5 557 76.5
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 4.0e-82 310.1 583 73.2
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 8.9e-82 308.9 579 74.3
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 8.9e-82 308.9 576 73.4
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.2e-81 308.5 620 71.3
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 1.2e-81 308.5 583 73.2
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 1.2e-81 308.5 583 73.2
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 2.0e-81 307.8 646 69.5
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.4e-81 306.6 609 70.8
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 5.7e-81 306.2 625 69.6
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.3e-80 305.1 580 73.1
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 2.2e-80 304.3 633 69.0
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 2.9e-80 303.9 603 71.0
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 6.4e-80 302.8 641 69.0
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 8.3e-80 302.4 573 74.3
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 8.3e-80 302.4 578 73.0
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.1e-79 302.0 623 69.0
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.8e-79 301.2 561 74.9
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.8e-79 301.2 527 79.3
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 2.4e-79 300.8 626 69.0
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 2.4e-79 300.8 571 64.4
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 2.4e-79 300.8 631 68.5
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 2.4e-79 300.8 639 68.1
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 4.1e-79 300.1 633 69.8
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.6e-78 298.1 580 73.3
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 3.5e-78 297.0 628 68.2
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.6e-78 296.6 619 69.0
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 5.9e-78 296.2 610 70.5
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.0e-77 295.4 706 50.7
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.0e-77 295.4 550 75.3
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 1.7e-77 294.7 577 72.6
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 8.6e-77 292.4 625 68.0
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 8.6e-77 292.4 588 71.9
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 1.9e-76 291.2 554 74.0
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 2.1e-75 287.7 618 69.7
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 3.6e-75 287.0 615 68.6
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.7e-75 286.6 615 68.6
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 3.1e-74 283.9 523 77.1
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 4.0e-74 283.5 523 76.9
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 6.8e-74 282.7 523 76.9
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 1.2e-73 282.0 529 75.6
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 2.6e-73 280.8 623 68.9
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 4.4e-73 280.0 526 75.7
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 5.8e-73 279.6 628 67.8
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.3e-72 278.5 542 76.4
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 2.2e-72 277.7 576 71.0
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 8.3e-72 275.8 618 43.4
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 2.4e-71 274.2 613 68.5
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.2e-70 271.9 531 75.9
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.6e-70 271.6 544 38.2
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 7.8e-70 269.2 577 72.1
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 8.1e-67 259.2 623 57.1
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 4.9e-64 250.0 649 59.5
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 4.9e-64 250.0 532 74.2
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 5.4e-63 246.5 647 64.5
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.1e-60 238.8 266 53.4
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.5e-60 238.4 209 61.7
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 8.9e-58 229.2 194 60.3
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 1.3e-56 225.3 181 61.9
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.1e-55 222.2 267 49.1
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 4.9e-48 196.8 160 58.8
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 3.5e-46 190.7 475 76.0
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 3.2e-39 167.5 245 42.9
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 2.1e-38 164.9 186 64.0
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 8.7e-37 159.5 110 65.5
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 1.5e-33 148.7 110 64.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.4e-31 142.1 115 58.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 1.8e-29 135.2 110 61.8
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 9.6e-28 129.4 80 77.5
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.3e-27 129.0 173 45.1
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 4.8e-27 127.1 204 36.8
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.2e-27 126.7 115 60.0
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.1e-26 125.9 80 75.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 6.3e-19 100.1 123 43.9
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.1e-18 99.4 184 41.8
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 2.4e-18 98.2 120 44.2
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 2.7e-14 84.7 96 47.9
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 5.1e-13 80.5 112 37.5
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.8e-10 72.0 72 84.7
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 4.5e-09 67.4 155 36.1


User provided reference genes

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