Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.3e-163 579.7 295 100.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 4.2e-82 308.9 170 95.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 5.4e-82 308.5 194 86.6
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 2.1e-81 306.6 194 85.1
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 2.7e-81 306.2 193 86.0
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 3.5e-81 305.8 194 85.6
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 3.5e-81 305.8 170 94.7
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.5e-81 305.8 170 96.5
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 4.6e-81 305.4 167 96.4
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 4.6e-81 305.4 170 95.3
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.7e-80 303.5 170 94.1
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 6.9e-77 291.6 177 89.8
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.4e-74 283.1 193 80.3
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 5.6e-71 271.9 170 84.7
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.5e-63 246.5 170 73.5
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 5.6e-63 245.4 170 76.5
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.6e-62 243.8 190 69.5
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.1e-62 243.4 170 75.3
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 6.2e-62 241.9 191 70.2
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 8.1e-62 241.5 180 70.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 8.1e-62 241.5 191 70.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.1e-61 241.1 170 74.7
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-61 240.7 170 74.7
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.8e-61 240.4 170 74.7
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.8e-61 240.4 177 72.3
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.4e-61 240.0 170 74.7
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 3.1e-61 239.6 170 72.4
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 6.9e-61 238.4 170 75.3
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 9.0e-61 238.0 170 74.7
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 9.0e-61 238.0 170 72.9
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.2e-60 237.7 170 72.4
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.2e-60 237.7 168 73.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.2e-60 237.7 170 71.8
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.5e-60 237.3 170 71.8
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 2.6e-60 236.5 200 65.5
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 2.6e-60 236.5 170 73.5
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.6e-60 236.5 170 72.9
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 2.6e-60 236.5 170 72.4
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 4.5e-60 235.7 192 65.1
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 5.8e-60 235.3 170 72.9
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 7.6e-60 235.0 169 73.4
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 7.6e-60 235.0 192 67.7
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 7.6e-60 235.0 168 72.6
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 9.9e-60 234.6 161 74.5
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.3e-59 234.2 172 70.3
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.7e-59 233.8 170 72.4
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.7e-59 233.8 168 72.6
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.2e-59 233.4 168 72.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 2.9e-59 233.0 197 66.5
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.8e-59 232.6 167 74.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 3.8e-59 232.6 168 72.6
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 6.4e-59 231.9 170 71.2
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 8.4e-59 231.5 168 71.4
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.5e-58 229.9 170 71.2
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.5e-58 229.9 170 72.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.5e-58 229.9 170 72.9
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.1e-58 228.4 170 70.6
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 7.1e-58 228.4 170 73.5
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 9.3e-58 228.0 164 72.6
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.2e-57 227.6 168 70.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.2e-57 227.6 198 66.2
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.1e-57 226.9 194 64.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 3.5e-57 226.1 192 64.1
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-56 224.6 170 70.6
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.0e-56 224.6 168 69.6
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.0e-56 224.6 195 63.1
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.3e-56 224.2 168 69.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.3e-56 224.2 168 69.0
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.3e-56 223.4 168 70.8
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 5.1e-56 222.2 197 62.4
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.1e-56 222.2 168 68.5
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 5.1e-56 222.2 195 62.6
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.7e-56 221.9 161 70.8
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 8.7e-56 221.5 172 68.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.3e-55 219.2 168 69.0
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 4.3e-55 219.2 171 68.4
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.1e-54 216.9 168 66.7
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.8e-54 216.5 192 64.1
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 4.8e-54 215.7 192 64.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 6.2e-54 215.3 192 63.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.2e-54 214.9 168 67.3
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.1e-53 214.5 169 69.2
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.1e-53 214.5 168 68.5
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.1e-53 213.0 160 68.1
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.1e-53 213.0 160 68.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.5e-52 210.7 182 63.7
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 2.0e-52 210.3 192 62.5
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 5.8e-52 208.8 168 68.5
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.7e-51 207.2 141 80.1
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.7e-51 207.2 150 70.7
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.2e-51 206.8 176 64.2
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.9e-51 206.5 196 60.7
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 9.3e-50 201.4 196 57.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.1e-49 198.7 170 63.5
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 7.9e-49 198.4 166 64.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 3.0e-48 196.4 214 53.3
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.5e-47 193.4 198 55.6
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.5e-47 193.4 168 63.7
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.7e-47 192.2 141 74.5
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.2e-46 190.3 152 67.8
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 6.9e-45 185.3 195 52.3
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.6e-44 183.3 169 59.8
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.5e-43 178.3 119 74.8
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.5e-43 178.3 162 58.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.1e-42 177.9 171 57.9
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.4e-42 177.6 197 50.8
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.1e-41 173.7 119 73.1
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.7e-41 173.3 172 58.1
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-37 161.4 164 57.3
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 4.5e-36 156.0 119 68.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 2.3e-32 143.7 168 51.2
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 3.0e-32 143.3 107 68.2
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 5.1e-32 142.5 174 43.7
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.3e-31 139.8 119 62.2
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.5e-28 131.0 132 58.3
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 3.5e-28 129.8 179 46.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.0e-27 128.3 171 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.9e-27 126.7 223 39.0
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.9e-27 126.7 168 45.8
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 2.8e-22 110.2 89 62.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.8e-22 109.4 82 68.3
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 7.0e-21 105.5 104 56.7
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 7.0e-21 105.5 80 65.0
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.9e-19 100.1 72 65.3
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 6.5e-19 99.0 77 68.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 9.4e-18 95.1 84 58.3
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 6.8e-16 89.0 117 42.7
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.8e-13 80.9 77 53.2
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 8.0e-09 65.5 114 33.3


User provided reference genes

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