Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 2.5e-131 472.2 255 100.0
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-44 184.1 99 94.9
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-41 172.9 98 87.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 3.1e-41 172.9 98 87.8
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.1e-41 172.9 99 85.9
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 5.2e-41 172.2 99 86.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.9e-41 171.4 99 85.9
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 8.9e-41 171.4 98 86.7
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 8.9e-41 171.4 98 86.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 8.9e-41 171.4 99 85.9
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-40 171.0 99 84.8
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.2e-40 171.0 99 84.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.0e-40 170.2 99 85.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-40 169.9 170 64.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.9e-38 163.7 99 80.8
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 9.3e-38 161.4 238 50.8
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.1e-37 160.2 237 50.6
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.3e-35 152.9 168 55.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 74.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 74.7
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 74.7
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 74.7
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 77.9
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 77.9
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 77.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 9.6e-35 151.4 95 77.9
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-34 151.0 95 74.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-34 151.0 95 74.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.3e-34 151.0 97 73.2
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-34 150.2 97 73.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.8e-34 149.8 99 73.7
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.6e-34 149.4 95 75.8
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.8e-34 149.1 99 71.7
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.8e-34 149.1 97 73.2
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.8e-34 149.1 95 71.6
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.8e-34 149.1 99 71.7
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.1e-34 148.3 95 76.8
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.1e-33 147.9 95 74.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.4e-33 147.5 97 72.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.4e-33 147.5 95 74.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.4e-33 147.5 95 74.7
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.4e-33 147.5 98 73.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.8e-33 147.1 79 91.1
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.8e-33 147.1 99 70.7
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.8e-33 147.1 95 75.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.4e-33 146.7 96 75.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.4e-33 146.7 97 70.1
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.4e-33 146.7 97 70.1
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.1e-33 146.4 95 74.7
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.0e-33 146.0 95 70.5
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 5.3e-33 145.6 97 72.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 6.9e-33 145.2 99 74.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 6.9e-33 145.2 169 55.0
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 9.0e-33 144.8 98 76.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 9.0e-33 144.8 166 54.8
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.2e-32 144.4 98 73.5
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-32 144.4 95 70.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.2e-32 144.4 95 73.7
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.2e-32 144.4 95 75.8
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-32 144.1 80 88.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.5e-32 144.1 98 71.4
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.0e-32 143.7 96 75.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.0e-32 143.7 95 73.7
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.6e-32 143.3 91 75.8
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 3.4e-32 142.9 94 70.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.4e-32 142.5 174 54.6
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 4.4e-32 142.5 95 72.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 5.8e-32 142.1 169 53.8
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 5.8e-32 142.1 170 52.9
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.8e-32 142.1 174 54.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.6e-32 141.7 82 81.7
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 7.6e-32 141.7 168 53.0
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.6e-32 141.7 95 71.6
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 7.6e-32 141.7 97 70.1
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 9.9e-32 141.4 95 71.6
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.9e-32 141.4 96 71.9
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 9.9e-32 141.4 168 55.4
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.3e-31 141.0 167 52.7
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.7e-31 140.6 106 67.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.7e-31 140.6 99 70.7
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.7e-31 140.6 165 54.5
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.7e-31 140.6 95 71.6
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.7e-31 140.6 95 72.6
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.7e-31 140.6 170 54.7
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.7e-31 140.6 170 52.4
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.2e-31 140.2 169 53.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.2e-31 140.2 169 53.8
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.8e-31 139.4 95 71.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.8e-31 139.4 95 72.6
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 3.8e-31 139.4 95 70.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-31 139.0 91 75.8
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.9e-31 139.0 99 71.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 6.4e-31 138.7 99 70.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.4e-31 138.7 98 72.4
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 8.4e-31 138.3 166 53.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 8.4e-31 138.3 165 53.9
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.4e-31 138.3 99 69.7
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 8.4e-31 138.3 99 68.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-30 137.9 167 53.9
BcaB01g01923 Brassica carinata HOM05D004152 ORTHO05D092139 1.1e-30 137.9 157 59.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.1e-30 137.9 168 52.4
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.1e-30 137.9 95 70.5
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-30 137.9 169 52.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.1e-30 137.9 165 52.1
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.1e-30 137.9 165 52.1
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.9e-30 137.1 95 69.5
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.9e-30 137.1 170 49.4
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.4e-30 136.7 170 50.6
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.4e-30 136.7 99 67.7
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.4e-30 136.7 99 68.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.4e-30 136.7 165 53.9
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.4e-30 136.7 165 53.9
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.2e-30 136.3 169 52.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 5.4e-30 135.6 164 51.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.2e-29 134.4 174 51.7
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.2e-29 134.4 170 52.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.6e-29 134.0 169 47.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.6e-29 134.0 166 53.6
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.1e-29 133.7 165 54.5
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.1e-29 133.7 169 52.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.1e-29 133.7 169 52.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.7e-29 133.3 169 51.5
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.5e-29 132.9 236 44.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.5e-29 132.9 170 51.8
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.6e-29 132.5 172 50.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 4.6e-29 132.5 223 45.3
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 7.9e-29 131.7 166 50.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.3e-28 130.2 99 67.7
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.0e-28 129.8 100 67.0
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-27 127.5 99 66.7
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 4.3e-27 125.9 167 47.9
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.6e-27 125.6 97 61.9
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 7.3e-27 125.2 169 50.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.8e-26 122.5 97 60.8
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.1e-25 121.3 93 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 6.9e-25 118.6 169 47.9
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 3.4e-24 116.3 78 69.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 9.9e-24 114.8 81 67.9
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.9e-22 110.5 152 46.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.9e-22 110.5 174 42.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 4.2e-22 109.4 226 39.4
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.1e-21 107.1 145 51.7
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.1e-21 107.1 167 43.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.3e-20 104.4 144 46.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.3e-20 104.4 146 47.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-18 97.4 84 59.5
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 6.9e-17 92.0 166 41.0
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 7.9e-13 78.6 60 61.7
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.0e-12 78.2 58 60.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.1e-10 70.5 52 63.5
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.8e-10 69.3 73 47.9
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 4.8e-10 69.3 64 56.2
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-09 68.2 62 56.5
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.4e-09 67.0 140 37.9
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 9.0e-09 65.1 56 62.5
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.0e-08 63.9 51 56.9
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.6e-08 63.5 70 45.7
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 1.4e-06 57.8 36 80.6
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-06 57.4 62 51.6
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-06 55.5 44 52.3


User provided reference genes

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