Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 1.9e-47 192.2 98 100.0
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 7.1e-47 190.3 98 99.0
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 7.1e-47 190.3 98 99.0
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 7.1e-47 190.3 98 99.0
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 7.1e-47 190.3 98 99.0
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 7.1e-47 190.3 98 99.0
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 9.3e-47 189.9 98 99.0
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 3.5e-46 188.0 98 98.0
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 1.3e-45 186.0 95 98.9
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 1.3e-45 186.0 95 98.9
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 1.3e-45 186.0 95 98.9
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 1.3e-45 186.0 95 98.9
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 1.3e-45 186.0 95 98.9
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-45 185.3 95 98.9
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-45 185.3 95 98.9
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-45 185.3 95 98.9
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-45 185.3 95 98.9
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 2.3e-45 185.3 95 98.9
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 2.3e-45 185.3 95 98.9
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.1e-44 183.0 95 97.9
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 7.4e-44 180.3 95 95.8
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 2.2e-43 178.7 95 94.7
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 2.2e-43 178.7 95 93.7
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 3.7e-43 177.9 95 94.7
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 4.1e-42 174.5 95 92.6
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 4.1e-42 174.5 95 92.6
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 5.3e-42 174.1 95 91.6
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 5.3e-42 174.1 95 92.6
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 5.3e-42 174.1 95 92.6
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 5.3e-42 174.1 95 92.6
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 6.9e-42 173.7 95 92.6
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.2e-41 172.9 95 90.5
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 1.2e-41 172.9 95 90.5
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 2.6e-41 171.8 95 88.4
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 5.9e-41 170.6 95 87.4
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 5.9e-41 170.6 95 88.4
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 5.9e-41 170.6 95 88.4
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 7.7e-41 170.2 95 88.4
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 1.0e-40 169.9 95 88.4
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 1.0e-40 169.9 95 86.3
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 86.3
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 87.4
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 87.4
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 87.4
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 87.4
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 86.3
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 87.4
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 1.3e-40 169.5 95 86.3
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.7e-40 169.1 95 87.4
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.7e-40 169.1 95 87.4
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 1.7e-40 169.1 95 86.3
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 1.7e-40 169.1 95 86.3
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 2.2e-40 168.7 95 86.3
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 2.2e-40 168.7 95 86.3
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 2.2e-40 168.7 95 87.4
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 2.2e-40 168.7 95 86.3
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 2.9e-40 168.3 94 88.3
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 2.9e-40 168.3 95 86.3
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 87.4
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 86.3
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 85.3
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 3.8e-40 167.9 94 88.3
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 87.4
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 3.8e-40 167.9 96 87.5
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 85.3
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 87.4
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 87.4
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 85.3
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 86.3
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 86.3
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 86.3
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 3.8e-40 167.9 95 86.3
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 5.0e-40 167.5 95 86.3
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 86.3
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 85.3
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 85.3
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 86.3
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 86.3
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 6.5e-40 167.2 92 89.1
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 6.5e-40 167.2 92 89.1
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 85.3
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 85.3
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 85.3
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 6.5e-40 167.2 95 85.3
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 6.5e-40 167.2 94 88.3
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 8.5e-40 166.8 95 86.3
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 8.5e-40 166.8 95 85.3
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 8.5e-40 166.8 92 88.0
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 8.5e-40 166.8 95 85.3
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 8.5e-40 166.8 92 88.0
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 8.5e-40 166.8 95 85.3
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 8.5e-40 166.8 95 84.2
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 8.5e-40 166.8 95 85.3
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 1.1e-39 166.4 95 84.2
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 1.4e-39 166.0 94 86.2
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 1.4e-39 166.0 94 85.1
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 1.4e-39 166.0 94 85.1
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 1.4e-39 166.0 95 85.3
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.4e-39 166.0 95 83.2
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 1.4e-39 166.0 94 85.1
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.4e-39 166.0 95 84.2
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.4e-39 166.0 95 84.2
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 1.9e-39 165.6 92 87.0
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 1.9e-39 165.6 92 87.0
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.9e-39 165.6 95 85.3
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 1.9e-39 165.6 92 87.0
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 1.9e-39 165.6 95 85.3
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 1.9e-39 165.6 94 87.2
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 1.9e-39 165.6 95 84.2
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 2.5e-39 165.2 95 84.2
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 2.5e-39 165.2 92 87.0
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 2.5e-39 165.2 92 87.0
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 2.5e-39 165.2 92 87.0
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 3.2e-39 164.9 95 85.3
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 3.2e-39 164.9 95 83.2
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 3.2e-39 164.9 96 82.3
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 4.2e-39 164.5 95 83.2
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 4.2e-39 164.5 106 82.1
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 4.2e-39 164.5 95 84.2
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 4.2e-39 164.5 95 83.2
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 5.5e-39 164.1 95 83.2
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 1.2e-38 162.9 95 84.2
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 1.6e-38 162.5 90 88.9
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 1.4e-37 159.5 106 80.2
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 1.8e-37 159.1 90 85.6
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 1.8e-37 159.1 92 82.6
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 2.3e-37 158.7 112 73.2
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 1.1e-36 156.4 92 82.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 7.7e-33 143.7 96 76.0
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 8.5e-32 140.2 91 70.3
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 3.6e-30 134.8 132 57.6
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 4.7e-30 134.4 78 83.3
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 7.9e-30 133.7 123 61.0
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 1.0e-29 133.3 81 79.0
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 6.7e-29 130.6 73 86.3
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.1e-28 129.8 71 88.7
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 2.0e-28 129.0 76 81.6
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 2.6e-28 128.6 71 87.3
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 3.3e-28 128.3 71 85.9
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 7.4e-28 127.1 94 70.2
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 1.7e-27 125.9 68 89.7
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 2.2e-27 125.6 89 67.4
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 4.8e-27 124.4 70 87.1
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 5.3e-26 120.9 104 68.3
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.2e-25 119.8 120 59.2
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 1.1e-23 113.2 91 64.8
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 1.6e-22 109.4 70 72.9
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 5.2e-21 104.4 56 87.5
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 5.2e-21 104.4 58 84.5
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.1e-20 103.2 88 54.5
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.1e-20 103.2 56 85.7
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.5e-20 102.8 56 83.9
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 2.0e-20 102.4 61 78.7
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 4.4e-20 101.3 148 44.6
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 6.5e-16 87.4 49 83.7
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 1.5e-15 86.3 49 83.7
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 2.5e-15 85.5 49 81.6
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-11 71.2 60 61.7


User provided reference genes

Program Settings