Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 1.9e-88 329.3 184 100.0
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 8.3e-81 303.9 186 83.9
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 4.1e-80 301.6 185 82.7
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 2.1e-79 299.3 185 82.2
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 7.8e-79 297.4 185 81.6
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.3e-70 270.0 184 75.5
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.8e-60 235.7 178 68.0
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.9e-57 225.7 178 63.5
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 4.9e-57 224.9 186 63.4
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 6.0e-55 218.0 177 63.8
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 6.9e-43 177.9 176 52.3
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.5e-42 176.8 176 52.3
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 5.8e-42 174.9 171 53.8
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.9e-41 171.8 176 55.1
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 6.5e-41 171.4 176 49.4
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 5.5e-40 168.3 177 59.3
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 7.1e-40 167.9 191 47.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 7.9e-39 164.5 177 58.2
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 7.9e-39 164.5 177 49.2
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.3e-38 163.7 178 50.0
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.3e-37 158.7 183 48.6
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 5.7e-37 158.3 175 49.1
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.3e-36 157.1 177 55.4
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 4.8e-36 155.2 177 54.2
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 6.2e-36 154.8 172 47.1
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 8.2e-36 154.5 178 47.2
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 8.2e-36 154.5 178 47.2
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 8.2e-36 154.5 178 47.2
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.8e-35 153.3 172 45.9
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 4.1e-35 152.1 158 49.4
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 5.3e-35 151.8 177 54.2
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-34 150.2 157 48.4
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.5e-34 150.2 157 48.4
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 2.0e-34 149.8 157 48.4
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 2.6e-34 149.4 177 46.9
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.9e-33 146.0 186 46.2
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.9e-32 143.3 189 45.0
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.5e-29 133.7 171 42.1
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.7e-29 131.0 159 42.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.3e-28 130.6 159 42.1
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.2e-28 129.8 169 40.2
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 8.2e-28 127.9 156 42.3
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.1e-27 125.6 176 39.2
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 5.3e-27 125.2 177 38.4
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 2.6e-26 122.9 165 38.8
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 3.4e-26 122.5 154 40.3
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.7e-25 120.2 159 38.4
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.5e-25 118.2 159 37.7
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.1e-24 117.5 161 38.5
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.4e-24 117.1 188 35.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.5e-24 116.3 178 35.4
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.5e-24 116.3 176 38.1
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.5e-24 115.2 159 37.1
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 5.5e-24 115.2 166 39.2
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.2e-23 114.0 156 37.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.7e-23 112.8 165 38.8
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.6e-23 112.5 168 39.9
A01p26200 Brassica napus HOM05D004190 ORTHO05D004692 1.4e-22 110.5 57 91.2
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.0e-22 109.4 168 35.7
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.1e-22 108.6 169 36.1
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 8.8e-22 107.8 148 37.8
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 8.8e-22 107.8 174 34.5
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 1.1e-21 107.5 181 35.4
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-21 107.1 172 34.3
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 2.0e-21 106.7 182 34.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 3.3e-21 105.9 170 37.1
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.7e-21 105.1 172 33.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 5.7e-21 105.1 163 37.4
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.7e-21 104.4 138 37.7
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-20 104.0 182 33.5
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.3e-20 104.0 184 33.2
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.8e-20 102.8 173 36.4
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.1e-19 100.9 142 39.4
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.4e-19 99.8 178 37.1
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 5.3e-19 98.6 176 32.4
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 9.1e-19 97.8 139 36.7
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.0e-18 96.7 170 33.5
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.0e-18 96.7 174 34.5
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 7.7e-18 94.7 172 39.5
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.0e-17 94.4 194 31.4
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.8e-17 92.4 174 33.9
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 5.0e-17 92.0 169 33.1
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 5.0e-17 92.0 134 37.3
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 8.5e-17 91.3 182 33.5
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.1e-16 90.9 151 37.1
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.9e-16 90.1 175 33.1
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 3.2e-16 89.4 183 33.3
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 5.5e-16 88.6 121 53.7
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 2.1e-15 86.7 159 31.4
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 2.7e-15 86.3 162 33.3
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 2.7e-15 86.3 162 33.3
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.7e-15 86.3 141 35.5
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 7.9e-15 84.7 208 29.3
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.4e-14 84.0 144 33.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.8e-14 83.6 157 31.8
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 3.0e-14 82.8 156 33.3
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 3.0e-14 82.8 142 34.5
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 3.9e-14 82.4 179 29.1
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 5.1e-14 82.0 123 35.0
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 8.8e-14 81.3 119 37.0
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 9.7e-13 77.8 151 32.5
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.7e-12 77.0 155 31.6
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.7e-12 77.0 141 30.5
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 2.8e-12 76.3 165 30.3
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 6.3e-12 75.1 144 31.2
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.1e-11 74.3 80 48.8
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.4e-11 73.9 176 35.2
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 1.4e-11 73.9 89 42.7
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 1.8e-11 73.6 115 32.2
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.4e-11 73.2 91 45.1
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.4e-11 73.2 145 31.7
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.4e-11 73.2 145 31.7
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 4.1e-11 72.4 166 33.1
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 4.1e-11 72.4 166 35.5
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.0e-11 71.6 91 44.0
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 1.2e-10 70.9 177 27.7
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.6e-10 70.5 146 32.2
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 1.0e-09 67.8 123 34.1
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.7e-09 67.0 148 32.4
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 2.2e-09 66.6 120 45.0
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.9e-09 66.2 146 33.6
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.8e-09 65.9 186 27.4
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.1e-08 64.3 154 27.3
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.1e-08 64.3 148 31.8
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 1.5e-08 63.9 143 39.9
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 2.5e-08 63.2 152 36.8
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.5e-08 63.2 168 27.4
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 3.2e-08 62.8 143 30.1
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 3.2e-08 62.8 87 40.2
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 4.2e-08 62.4 66 45.5
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 5.5e-08 62.0 43 55.8
C03p13770 Brassica napus HOM05D000021 ORTHO05D000010 9.4e-08 61.2 43 55.8
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 9.4e-08 61.2 122 32.0
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.2e-07 60.8 122 30.3
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.6e-07 60.5 62 45.2
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.6e-07 60.5 139 28.1
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.6e-07 60.5 126 31.0
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 6.1e-07 58.5 74 41.9
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 6.1e-07 58.5 148 26.4
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 6.1e-07 58.5 139 30.2
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.0e-06 57.8 184 26.6
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.0e-06 57.8 147 27.2
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.0e-06 57.8 60 45.0
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 1.4e-06 57.4 51 47.1
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 1.4e-06 57.4 51 47.1
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.4e-06 57.4 178 25.8
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 1.8e-06 57.0 169 26.6
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 2.3e-06 56.6 156 24.4
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 2.3e-06 56.6 156 24.4
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 2.3e-06 56.6 156 24.4
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 3.0e-06 56.2 75 38.7
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.0e-06 56.2 154 29.2
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.0e-06 56.2 65 44.6
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 4.0e-06 55.8 183 25.7
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 5.2e-06 55.5 120 30.8
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 5.2e-06 55.5 151 30.5
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 6.7e-06 55.1 57 49.1
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 8.8e-06 54.7 158 33.5
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 8.8e-06 54.7 147 25.9


User provided reference genes

Program Settings