Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.1e-213 746.9 543 100.0
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 4.2e-149 532.3 575 79.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 2.8e-148 529.6 558 80.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.0e-147 527.7 526 68.3
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 7.0e-144 515.0 559 79.1
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 2.9e-142 509.6 563 78.3
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 1.9e-141 506.9 563 78.2
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 4.0e-139 499.2 568 76.6
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 2.6e-138 496.5 563 76.0
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 4.1e-136 489.2 567 74.4
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 1.1e-133 481.1 593 73.0
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 4.0e-131 472.6 564 72.2
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 8.3e-129 464.9 572 72.4
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 7.3e-117 425.2 525 74.3
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 4.3e-109 399.4 570 57.7
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.0e-82 310.8 448 57.1
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 4.6e-79 299.7 565 49.4
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.5e-77 294.7 543 51.4
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 4.3e-77 293.1 476 60.7
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 2.6e-74 283.9 528 60.6
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 5.9e-74 282.7 518 44.2
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.0e-73 282.0 477 50.9
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.7e-73 281.2 475 54.5
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 2.2e-73 280.8 535 56.1
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 2.2e-73 280.8 528 54.9
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 4.2e-72 276.6 545 56.0
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 4.6e-71 273.1 540 48.9
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.4e-70 271.6 516 57.6
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.0e-69 267.7 560 35.4
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 2.5e-69 267.3 471 43.1
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 2.5e-69 267.3 484 55.4
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 3.3e-69 266.9 577 55.6
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 4.3e-69 266.5 551 45.0
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.8e-68 263.8 464 51.9
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 2.8e-68 263.8 489 48.1
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 2.8e-68 263.8 507 45.8
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 8.2e-68 262.3 497 54.5
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.1e-67 261.9 514 57.6
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 3.1e-67 260.4 571 49.2
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 3.1e-67 260.4 537 51.8
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 6.9e-67 259.2 549 37.5
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 6.9e-67 259.2 533 49.7
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 1.2e-66 258.5 476 59.7
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.6e-66 257.3 564 45.7
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 3.4e-66 256.9 532 39.8
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.2e-65 254.2 486 47.5
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.9e-65 253.8 503 37.0
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 8.5e-65 252.3 539 57.9
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 3.2e-64 250.4 527 56.2
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.2e-63 248.4 496 40.3
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 2.1e-63 247.7 496 56.9
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.6e-63 246.9 542 47.8
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 3.6e-63 246.9 544 46.0
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 3.6e-63 246.9 559 51.3
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 6.1e-63 246.1 494 40.1
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 7.9e-63 245.7 528 51.9
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.8e-62 244.6 450 56.4
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 3.9e-62 243.4 562 50.2
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 5.1e-62 243.0 471 41.6
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 6.7e-62 242.7 474 47.5
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.1e-61 241.9 507 46.2
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 2.0e-61 241.1 497 47.9
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.4e-61 240.0 608 38.7
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 5.7e-61 239.6 535 43.9
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 5.7e-61 239.6 592 43.6
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.8e-60 237.3 467 43.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 4.8e-60 236.5 537 54.7
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 6.3e-60 236.1 567 43.6
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.1e-59 233.8 496 38.1
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 1.0e-57 228.8 546 49.1
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 2.2e-57 227.6 489 35.2
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 6.5e-57 226.1 501 55.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.5e-56 224.9 535 44.7
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.9e-56 224.6 528 49.1
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 3.2e-56 223.8 528 49.1
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.2e-55 221.9 539 48.6
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 3.6e-55 220.3 496 46.4
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 1.0e-54 218.8 534 50.4
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 3.0e-54 217.2 522 53.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 5.2e-54 216.5 540 32.6
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.1e-53 215.3 516 48.6
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 2.0e-53 214.5 545 51.6
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.0e-53 214.5 537 36.3
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 9.7e-53 212.2 471 49.7
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.3e-52 211.8 525 47.8
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 1.8e-51 208.0 498 48.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.0e-50 204.5 484 53.3
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 3.5e-50 203.8 505 43.0
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.1e-48 198.7 476 31.9
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 1.5e-48 198.4 429 47.8
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 5.5e-48 196.4 549 40.8
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 9.4e-48 195.7 485 43.1
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 6.1e-47 193.0 421 39.2
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 9.8e-45 185.7 505 40.0
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.9e-42 176.4 538 30.5
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.2e-41 174.5 515 40.6
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 3.2e-40 170.6 538 29.7
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 8.3e-36 156.0 407 35.4
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 7.0e-35 152.9 149 61.7
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 2.0e-34 151.4 86 90.7
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.0e-34 151.4 185 47.0
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.9e-34 149.8 284 45.4
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 8.6e-33 146.0 407 36.4
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.2e-31 142.1 206 41.7
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 3.6e-31 140.6 330 35.2
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 3.0e-30 137.5 448 29.0
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 2.4e-27 127.9 322 42.2
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.1e-27 127.1 177 44.1
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 2.0e-26 124.8 213 37.1
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.2e-19 100.9 70 65.7
C03p18390 Brassica napus HOM05D035051 ORTHO05D031918 2.7e-18 97.8 167 44.3
BolC3t14236H Brassica oleracea HOM05D035051 ORTHO05D031918 2.7e-18 97.8 167 44.3
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.7e-18 97.8 326 29.1
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 7.8e-18 96.3 136 41.2
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.1e-16 92.4 341 34.3
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 1.9e-16 91.7 58 72.4
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.8e-15 87.8 75 57.3
BcaC01g06180 Brassica carinata HOM05D035051 ORTHO05D031918 8.9e-14 82.8 163 41.1
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 2.6e-13 81.3 78 56.4
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 6.4e-12 76.6 60 60.0
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 1.4e-11 75.5 151 32.5
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.4e-11 74.7 327 43.7
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.1e-11 73.9 326 23.6
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 6.0e-10 70.1 52 63.5
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 7.8e-10 69.7 74 51.4
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 3.3e-08 64.3 146 25.3
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 5.6e-08 63.5 115 35.7
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.2e-07 62.4 152 29.6
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 2.8e-07 61.2 50 58.0
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.8e-06 58.5 41 65.9
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.8e-06 56.6 156 26.9
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 8.9e-06 56.2 33 78.8


User provided reference genes

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