Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21533 Brassica carinata HOM05D000446 ORTHO05D030786 5.3e-66 254.2 129 100.0
Thhalv10012739m.g Eutrema salsugineum HOM05D000446 ORTHO05D000321 2.4e-26 122.5 85 80.0
BolC9t59542H Brassica oleracea HOM05D000446 ORTHO05D000321 2.0e-25 119.4 83 75.9
BcaB08g37192 Brassica carinata HOM05D000446 ORTHO05D000321 2.7e-25 119.0 83 75.9
BcaNung06251 Brassica carinata HOM05D000446 ORTHO05D000321 2.7e-25 119.0 83 78.3
C06p43170 Brassica napus HOM05D000446 ORTHO05D000321 2.7e-25 119.0 83 78.3
BolC6t39122H Brassica oleracea HOM05D000446 ORTHO05D000321 3.5e-25 118.6 83 77.1
BcaC04g19221 Brassica carinata HOM05D000446 ORTHO05D000321 5.9e-25 117.9 83 74.7
C09p65370 Brassica napus HOM05D000446 ORTHO05D000321 5.9e-25 117.9 83 74.7
BolC9t59362H Brassica oleracea HOM05D000446 ORTHO05D000321 5.9e-25 117.9 83 74.7
BraA10t44823Z Brassica rapa HOM05D000446 ORTHO05D000321 5.9e-25 117.9 83 74.7
C09p67800 Brassica napus HOM05D000446 ORTHO05D000321 7.8e-25 117.5 83 74.7
BcaB08g34864 Brassica carinata HOM05D000446 ORTHO05D000321 1.0e-24 117.1 83 75.9
A10p27710 Brassica napus HOM05D000446 ORTHO05D000321 1.0e-24 117.1 83 74.7
C09p56000 Brassica napus HOM05D000446 ORTHO05D000321 1.3e-24 116.7 83 74.7
BolC9t58467H Brassica oleracea HOM05D000446 ORTHO05D000321 1.3e-24 116.7 83 74.7
BcaB03g15904 Brassica carinata HOM05D000446 ORTHO05D000321 2.9e-24 115.5 83 73.5
BcaB07g31121 Brassica carinata HOM05D000446 ORTHO05D000321 6.6e-24 114.4 83 74.7
BcaB08g37156 Brassica carinata HOM05D000446 ORTHO05D000321 1.5e-23 113.2 84 75.0
BcaB08g37157 Brassica carinata HOM05D000446 ORTHO05D000321 1.5e-23 113.2 84 75.0
C06p40180 Brassica napus HOM05D000446 ORTHO05D000321 1.5e-23 113.2 83 74.7
BolC6t39099H Brassica oleracea HOM05D000446 ORTHO05D000321 1.5e-23 113.2 83 74.7
Sp6g33670 Schrenkiella parvula HOM05D000446 ORTHO05D000321 1.9e-23 112.8 85 71.8
A07p33760 Brassica napus HOM05D000446 ORTHO05D000321 3.3e-23 112.1 83 73.5
BraA07t31002Z Brassica rapa HOM05D000446 ORTHO05D000321 3.3e-23 112.1 83 73.5
BcaB08g37161 Brassica carinata HOM05D000446 ORTHO05D000321 1.6e-22 109.8 84 72.6
BcaB06g26626 Brassica carinata HOM05D000446 ORTHO05D000321 6.1e-22 107.8 83 71.1
AL6G20130 Arabidopsis lyrata HOM05D000446 ORTHO05D000321 8.9e-21 104.0 82 70.7
AT5G09730 Arabidopsis thaliana HOM05D000446 ORTHO05D000321 3.2e-18 95.5 80 65.0
Thhalv10003678m.g Eutrema salsugineum HOM05D000446 ORTHO05D000321 1.2e-17 93.6 87 62.1
BcaC04g23310 Brassica carinata HOM05D000446 ORTHO05D000321 3.5e-17 92.0 87 60.9
C09p09850 Brassica napus HOM05D000446 ORTHO05D000321 3.5e-17 92.0 87 60.9
BolC9t53893H Brassica oleracea HOM05D000446 ORTHO05D000321 3.5e-17 92.0 87 60.9
Carub.0008s2537 Capsella rubella HOM05D000446 ORTHO05D000321 1.7e-16 89.7 91 60.4
BcaB04g19975 Brassica carinata HOM05D000446 ORTHO05D000321 5.0e-16 88.2 87 58.6
BcaB08g37154 Brassica carinata HOM05D000446 ORTHO05D000321 8.6e-16 87.4 81 64.2
BcaC04g19409 Brassica carinata HOM05D000446 ORTHO05D000321 1.5e-15 86.7 80 62.5
A02p43370 Brassica napus HOM05D000446 ORTHO05D000321 1.5e-15 86.7 87 60.9
A09p08720 Brassica napus HOM05D000446 ORTHO05D000321 1.5e-15 86.7 87 57.5
BraA02t09263Z Brassica rapa HOM05D000446 ORTHO05D000321 1.5e-15 86.7 87 60.9
BraA09t36520Z Brassica rapa HOM05D000446 ORTHO05D000321 1.5e-15 86.7 87 57.5
Sp2g27640 Schrenkiella parvula HOM05D000446 ORTHO05D000321 4.3e-15 85.1 87 58.6
BcaC01g06909 Brassica carinata HOM05D000446 ORTHO05D000321 9.5e-15 84.0 91 57.1
C03p61670 Brassica napus HOM05D000446 ORTHO05D000321 9.5e-15 84.0 91 57.1
BcaB07g29749 Brassica carinata HOM05D000446 ORTHO05D000321 2.8e-14 82.4 87 57.5
C02p63460 Brassica napus HOM05D000446 ORTHO05D000321 3.6e-14 82.0 87 58.6
BolC2t12413H Brassica oleracea HOM05D000446 ORTHO05D000321 8.0e-14 80.9 87 57.5
BcaC08g46136 Brassica carinata HOM05D000446 ORTHO05D096173 1.8e-13 79.7 53 77.4
A06p31310 Brassica napus HOM05D000446 ORTHO05D000321 2.3e-13 79.3 91 54.9
CARHR278540 Cardamine hirsuta HOM05D000446 ORTHO05D000321 2.3e-13 79.3 87 55.2
BolC3t18430H Brassica oleracea HOM05D000446 ORTHO05D000321 3.1e-13 79.0 91 54.9
BraA06t26071Z Brassica rapa HOM05D000446 ORTHO05D000321 5.2e-13 78.2 91 54.9
THA.LOC104818459 Tarenaya hassleriana HOM05D000446 ORTHO05D000321 6.8e-13 77.8 70 58.6
PGR042G3034 Punica granatum HOM05D000446 ORTHO05D000321 4.4e-12 75.1 111 44.1
Aa31LG1G17370 Aethionema arabicum HOM05D000446 ORTHO05D000321 1.7e-11 73.2 90 54.4
Eucgr.G00650 Eucalyptus grandis HOM05D000446 ORTHO05D000321 8.3e-11 70.9 83 50.6
Eucgr.G00651 Eucalyptus grandis HOM05D000446 ORTHO05D000321 1.9e-10 69.7 83 49.4
Sc08g0004750 Simmondsia chinensis HOM05D000446 ORTHO05D000321 3.2e-10 68.9 83 51.8
AT5G64570 Arabidopsis thaliana HOM05D000446 ORTHO05D000321 4.1e-10 68.6 91 50.5
Eucgr.G00653 Eucalyptus grandis HOM05D000446 ORTHO05D000321 4.1e-10 68.6 54 63.0
Peaxi162Scf00003g03636 Petunia axillaris HOM05D000446 ORTHO05D000321 1.2e-09 67.0 71 57.7
HPP92_027681 Vanilla planifolia HOM05D000446 ORTHO05D000321 1.2e-09 67.0 63 54.0
HPP92_011223 Vanilla planifolia HOM05D000446 ORTHO05D000321 1.6e-09 66.6 67 50.7
MBI02_g18925_MAGBIO Magnolia biondii HOM05D000446 ORTHO05D000321 2.0e-09 66.2 82 45.1
Nitab4.5_0000078g0160 Nicotiana tabacum HOM05D000446 ORTHO05D000321 2.0e-09 66.2 69 58.0
Nitab4.5_0011639g0010 Nicotiana tabacum HOM05D000446 ORTHO05D000321 2.0e-09 66.2 69 58.0
arahy.Tifrunner.gnm1.ann1.NI0LJQ Arachis hypogaea HOM05D000446 ORTHO05D000321 2.7e-09 65.9 78 50.0
arahy.Tifrunner.gnm1.ann1.Q2VG00 Arachis hypogaea HOM05D000446 ORTHO05D000321 2.7e-09 65.9 78 50.0
Eucgr.G00649 Eucalyptus grandis HOM05D000446 ORTHO05D000321 2.7e-09 65.9 83 48.2
arahy.Tifrunner.gnm1.ann1.DAE2HF Arachis hypogaea HOM05D000446 ORTHO05D000321 3.5e-09 65.5 69 49.3
BcaB08g37160 Brassica carinata HOM05D000446 ORTHO05D000321 3.5e-09 65.5 48 64.6
Actinidia28069 Actinidia chinensis HOM05D000446 ORTHO05D000321 4.6e-09 65.1 80 48.8
Aa31LG3G17370 Aethionema arabicum HOM05D000446 ORTHO05D000321 4.6e-09 65.1 83 50.6
AUR62027384 Chenopodium quinoa HOM05D000446 ORTHO05D000321 6.0e-09 64.7 70 50.0
Potri.001G206800 Populus trichocarpa HOM05D000446 ORTHO05D000321 6.0e-09 64.7 67 55.2
Manes.04G057600 Manihot esculenta HOM05D000446 ORTHO05D000321 7.8e-09 64.3 64 54.7
Solyc10g047030.3 Solanum lycopersicum HOM05D000446 ORTHO05D000321 7.8e-09 64.3 79 50.6
Ciclev10000355m.g Citrus clementina HOM05D000446 ORTHO05D000321 1.0e-08 63.9 79 50.6
GSVIVG01013328001 Vitis vinifera HOM05D000446 ORTHO05D000321 1.0e-08 63.9 75 48.0
GSVIVG01022541001 Vitis vinifera HOM05D000446 ORTHO05D000321 1.0e-08 63.9 75 48.0
PSO675G3796 Papaver somniferum HOM05D000446 ORTHO05D000321 1.3e-08 63.5 78 50.0
arahy.Tifrunner.gnm1.ann1.YM2442 Arachis hypogaea HOM05D000446 ORTHO05D000321 1.7e-08 63.2 69 47.8
EL10Ac8g19339 Beta vulgaris HOM05D000446 ORTHO05D000321 1.7e-08 63.2 70 48.6
AUR62031299 Chenopodium quinoa HOM05D000446 ORTHO05D000321 1.7e-08 63.2 70 51.4
Potri.003G022900 Populus trichocarpa HOM05D000446 ORTHO05D000321 1.7e-08 63.2 71 53.5
CAN.G619.30 Capsicum annuum HOM05D000446 ORTHO05D000321 2.3e-08 62.8 77 51.9
Dinv09052 Davidia involucrata HOM05D000446 ORTHO05D000321 2.3e-08 62.8 85 43.5
Dinv19317 Davidia involucrata HOM05D000446 ORTHO05D000321 2.3e-08 62.8 85 43.5
Aqoxy6G00469 Aquilegia oxysepala HOM05D000446 ORTHO05D000321 3.0e-08 62.4 78 48.7
Sopen10g016980 Solanum pennellii HOM05D000446 ORTHO05D000321 3.0e-08 62.4 79 49.4
SalBow6G3748 Salvia bowleyana HOM05D000446 ORTHO05D000321 3.9e-08 62.0 69 50.7
SalBow6G5335 Salvia bowleyana HOM05D000446 ORTHO05D000321 3.9e-08 62.0 69 50.7
Atru.chr6.921 Acer truncatum HOM05D000446 ORTHO05D030786 5.0e-08 61.6 77 48.1
Ah.14g085410 Amaranthus hybridus HOM05D000446 ORTHO05D000321 5.0e-08 61.6 53 56.6
CiPaw.06G151600 Carya illinoinensis HOM05D000446 ORTHO05D000321 5.0e-08 61.6 78 48.7
SGA_v2.0_scaffold45G17293 Striga asiatica HOM05D000446 ORTHO05D000321 5.0e-08 61.6 69 49.3
MSTRG.5256 Avicennia marina HOM05D000446 ORTHO05D000321 6.6e-08 61.2 70 45.7
Haze_10627 Corylus avellana HOM05D000446 ORTHO05D000321 8.6e-08 60.8 63 52.4
DCAR_001800 Daucus carota HOM05D000446 ORTHO05D000321 8.6e-08 60.8 83 48.2
HanXRQChr10g0293191 Helianthus annuus HOM05D000446 ORTHO05D000321 8.6e-08 60.8 90 43.3
PSO541G5891 Papaver somniferum HOM05D000446 ORTHO05D000321 8.6e-08 60.8 78 47.4
MSTRG.27782 Avicennia marina HOM05D000446 ORTHO05D000321 1.1e-07 60.5 71 46.5
TWI59G0347 Tripterygium wilfordii HOM05D000446 ORTHO05D000321 1.1e-07 60.5 84 47.6
TAR628G0392 Trochodendron aralioides HOM05D000446 ORTHO05D000321 1.1e-07 60.5 84 46.4
Migut.B00635 Erythranthe guttata HOM05D000446 ORTHO05D000321 1.5e-07 60.1 73 39.7
SGA_v2.0_scaffold83G26279 Striga asiatica HOM05D000446 ORTHO05D000321 1.5e-07 60.1 81 46.9
CSS0015405 Camellia sinensis var. sinensis HOM05D000446 ORTHO05D000321 1.9e-07 59.7 88 43.2
CiPaw.05G038500 Carya illinoinensis HOM05D000446 ORTHO05D000321 1.9e-07 59.7 51 56.9
Dinv19321 Davidia involucrata HOM05D000446 ORTHO05D000321 1.9e-07 59.7 54 53.7
Glyma.15G051500 Glycine max HOM05D000446 ORTHO05D000321 1.9e-07 59.7 70 47.1
Nitab4.5_0003089g0010 Nicotiana tabacum HOM05D000446 ORTHO05D000321 1.9e-07 59.7 75 45.3
CsaV3_7G006230 Cucumis sativus L. HOM05D000446 ORTHO05D000321 2.5e-07 59.3 66 48.5
QL11p019646 Quercus lobata HOM05D000446 ORTHO05D000321 2.5e-07 59.3 84 50.0
Sabra01G0160100 Salix brachista HOM05D000446 ORTHO05D000321 2.5e-07 59.3 86 47.7
SalBow6G6263 Salvia bowleyana HOM05D000446 ORTHO05D000321 2.5e-07 59.3 69 49.3
TAR625G0108 Trochodendron aralioides HOM05D000446 ORTHO05D000321 2.5e-07 59.3 82 47.6
ClCG09G014970 Citrullus lanatus HOM05D000446 ORTHO05D000321 3.3e-07 58.9 80 45.0
COL.COLO4_20868 Corchorus olitorius HOM05D000446 ORTHO05D000321 3.3e-07 58.9 75 48.0
Glyma.08G180900 Glycine max HOM05D000446 ORTHO05D000321 3.3e-07 58.9 52 53.8
Lj4g0013580 Lotus japonicus HOM05D000446 ORTHO05D000321 3.3e-07 58.9 52 53.8
Lalb_Chr20g0123131 Lupinus albus HOM05D000446 ORTHO05D000321 3.3e-07 58.9 70 48.6
Lalb_Chr07g0189471 Lupinus albus HOM05D000446 ORTHO05D000321 4.3e-07 58.5 78 43.6
Phvul.006G208200 Phaseolus vulgaris HOM05D000446 ORTHO05D000321 4.3e-07 58.5 51 54.9
PGR031G3497 Punica granatum HOM05D000446 ORTHO05D000321 4.3e-07 58.5 45 60.0
Sed0013621 Sechium edule HOM05D000446 ORTHO05D000321 4.3e-07 58.5 69 49.3
vmacro19913 Vaccinium macrocarpon HOM05D000446 ORTHO05D000321 4.3e-07 58.5 101 39.6
ATR0564G370 Amborella trichopoda HOM05D000446 ORTHO05D000321 5.6e-07 58.2 79 44.3
Cpa.g.sc0.14 Carica papaya HOM05D000446 ORTHO05D000321 5.6e-07 58.2 51 56.9
Lsat_1_v5_gn_6_78780 Lactuca sativa HOM05D000446 ORTHO05D000321 7.3e-07 57.8 55 52.7
Lj5A243T95 Lonicera japonica HOM05D000446 ORTHO05D000321 7.3e-07 57.8 83 38.6
Prupe.1G559400 Prunus persica HOM05D000446 ORTHO05D000321 7.3e-07 57.8 85 47.1
Sopen01g047480 Solanum pennellii HOM05D000446 ORTHO05D000321 7.3e-07 57.8 89 41.6
VMungo0540G1670 Vigna mungo HOM05D000446 ORTHO05D000321 7.3e-07 57.8 51 54.9
MD08G1221800 Malus domestica HOM05D000446 ORTHO05D000321 9.5e-07 57.4 51 54.9
Phvul.002G206800 Phaseolus vulgaris HOM05D000446 ORTHO05D000321 9.5e-07 57.4 51 52.9
Solyc01g104950.4 Solanum lycopersicum HOM05D000446 ORTHO05D000321 9.5e-07 57.4 89 41.6
Oeu010002.1 Olea europaea HOM05D000446 ORTHO05D000321 1.2e-06 57.0 78 41.0
Thecc.02G143200 Theobroma cacao HOM05D000446 ORTHO05D000321 1.2e-06 57.0 51 52.9
Lsat_1_v5_gn_9_117881 Lactuca sativa HOM05D000446 ORTHO05D000321 1.6e-06 56.6 68 50.0
PGSC0003DMG400009484 Solanum tuberosum HOM05D000446 ORTHO05D000321 1.6e-06 56.6 71 45.1
SGA_v2.0_scaffold729G53524 Striga asiatica HOM05D000446 ORTHO05D000321 2.1e-06 56.2 74 47.3
BcaB08g37158 Brassica carinata HOM05D000446 ORTHO05D000321 2.8e-06 55.8 81 48.1
Migut.B00636 Erythranthe guttata HOM05D000446 ORTHO05D000321 2.8e-06 55.8 77 40.3
VMungo0251G1843 Vigna mungo HOM05D000446 ORTHO05D000321 2.8e-06 55.8 72 45.8
CAN.G523.94 Capsicum annuum HOM05D000446 ORTHO05D000321 3.6e-06 55.5 67 49.3
Ca_18337_v3 Cicer arietinum L. HOM05D000446 ORTHO05D000321 3.6e-06 55.5 74 45.9
Migut.N01010 Erythranthe guttata HOM05D000446 ORTHO05D000321 3.6e-06 55.5 85 42.4
Gohir.A03G171800 Gossypium hirsutum HOM05D000446 ORTHO05D000321 3.6e-06 55.5 81 45.7
Gorai.005G218000 Gossypium raimondii HOM05D000446 ORTHO05D000321 3.6e-06 55.5 81 45.7
MD15G1414100 Malus domestica HOM05D000446 ORTHO05D000321 3.6e-06 55.5 51 52.9
Migut.O00453 Erythranthe guttata HOM05D000446 ORTHO05D000321 4.7e-06 55.1 80 46.2
Gohir.D02G195100 Gossypium hirsutum HOM05D000446 ORTHO05D000321 4.7e-06 55.1 81 45.7
HanXRQChr17g0537941 Helianthus annuus HOM05D000446 ORTHO05D000321 4.7e-06 55.1 73 42.5
Peaxi162Scf00001g00311 Petunia axillaris HOM05D000446 ORTHO05D000321 4.7e-06 55.1 54 51.9
Sabra03G0014400 Salix brachista HOM05D000446 ORTHO05D000321 4.7e-06 55.1 78 42.3
CSS0020061 Camellia sinensis var. sinensis HOM05D000446 ORTHO05D000321 6.2e-06 54.7 62 45.2
Lsat_1_v5_gn_5_106761 Lactuca sativa HOM05D000446 ORTHO05D000321 6.2e-06 54.7 78 46.2
Lj6g0005949 Lotus japonicus HOM05D000446 ORTHO05D000321 6.2e-06 54.7 68 47.1
unitig_62.g23625 Utricularia gibba HOM05D000446 ORTHO05D000321 6.2e-06 54.7 55 47.3
Duzib132G1148 Durio zibethinus HOM05D000446 ORTHO05D000321 8.1e-06 54.3 51 51.0
Glyma.08G074700 Glycine max HOM05D000446 ORTHO05D006706 8.1e-06 54.3 47 55.3
Nn5g28898 Nelumbo nucifera HOM05D000446 ORTHO05D000321 8.1e-06 54.3 79 46.8
SalBow6G3152 Salvia bowleyana HOM05D000446 ORTHO05D000321 8.1e-06 54.3 69 46.4
SalBow6G3889 Salvia bowleyana HOM05D000446 ORTHO05D000321 8.1e-06 54.3 69 46.4


User provided reference genes

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