Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19836 Brassica carinata HOM05D005084 ORTHO05D006254 7.6e-131 470.7 270 100.0
BcaC04g23525 Brassica carinata HOM05D005084 ORTHO05D006254 5.1e-119 431.4 271 91.9
BolC9t53651H Brassica oleracea HOM05D005084 ORTHO05D006254 9.6e-118 427.2 273 91.6
A09p06600 Brassica napus HOM05D005084 ORTHO05D006254 1.3e-111 406.8 274 89.8
BraA09t36307Z Brassica rapa HOM05D005084 ORTHO05D006254 1.5e-107 393.3 274 88.0
Sp2g23190 Schrenkiella parvula HOM05D005084 ORTHO05D006254 1.3e-106 390.2 283 81.3
C09p07370 Brassica napus HOM05D005084 ORTHO05D006254 1.9e-105 386.3 271 84.5
Thhalv10004166m.g Eutrema salsugineum HOM05D005084 ORTHO05D006254 3.5e-104 382.1 283 83.0
AL6G35480 Arabidopsis lyrata HOM05D005084 ORTHO05D006254 3.5e-96 355.5 287 79.1
BcaNung01816 Brassica carinata HOM05D005084 ORTHO05D006254 1.2e-91 340.5 284 78.2
BraA06t26420Z Brassica rapa HOM05D005084 ORTHO05D006254 1.2e-91 340.5 285 77.9
Carub.0006s2185 Capsella rubella HOM05D005084 ORTHO05D006254 2.0e-91 339.7 288 74.3
A06p34960 Brassica napus HOM05D005084 ORTHO05D006254 3.4e-91 339.0 285 77.5
C07p43590 Brassica napus HOM05D005084 ORTHO05D006254 7.6e-91 337.8 285 77.9
BolC7t44886H Brassica oleracea HOM05D005084 ORTHO05D006254 7.6e-91 337.8 285 77.9
AT5G24120 Arabidopsis thaliana HOM05D005084 ORTHO05D006254 1.0e-90 337.4 286 75.2
CARHR189460 Cardamine hirsuta HOM05D005084 ORTHO05D006254 1.8e-87 326.6 287 72.8
BcaNung01211 Brassica carinata HOM05D005084 ORTHO05D006254 3.3e-86 322.4 358 62.0
Aa31LG11G3390 Aethionema arabicum HOM05D005084 ORTHO05D006254 1.4e-84 317.0 288 67.0
THA.LOC104801874 Tarenaya hassleriana HOM05D005084 ORTHO05D006254 5.5e-73 278.5 279 63.8
Cfa016364 Carpinus fangiana HOM05D005084 ORTHO05D006254 3.1e-60 236.1 288 51.0
Haze_00097 Corylus avellana HOM05D005084 ORTHO05D006254 3.1e-60 236.1 288 51.0
Manes.06G157400 Manihot esculenta HOM05D005084 ORTHO05D006254 5.3e-60 235.3 275 53.1
Cpa.g.sc3.54 Carica papaya HOM05D005084 ORTHO05D006254 5.9e-59 231.9 287 51.2
Thecc.03G193300 Theobroma cacao HOM05D005084 ORTHO05D006254 1.3e-58 230.7 290 52.1
arahy.Tifrunner.gnm1.ann1.AT7H7M Arachis hypogaea HOM05D005084 ORTHO05D006254 3.8e-58 229.2 286 51.7
Ciclev10004760m.g Citrus clementina HOM05D005084 ORTHO05D006254 3.8e-58 229.2 287 52.3
Duzib205G0306 Durio zibethinus HOM05D005084 ORTHO05D006254 3.8e-58 229.2 286 51.7
Prupe.2G307500 Prunus persica HOM05D005084 ORTHO05D006254 6.5e-58 228.4 290 51.7
FAN06G2664 Fragaria x ananassa HOM05D005084 ORTHO05D006254 1.5e-57 227.3 289 49.8
arahy.Tifrunner.gnm1.ann1.77AFJV Arachis hypogaea HOM05D005084 ORTHO05D006254 5.5e-57 225.3 286 50.7
FAN06G3876 Fragaria x ananassa HOM05D005084 ORTHO05D006254 7.2e-57 224.9 289 49.5
TWI14G0873 Tripterygium wilfordii HOM05D005084 ORTHO05D006254 7.2e-57 224.9 287 49.8
Gohir.D12G252400 Gossypium hirsutum HOM05D005084 ORTHO05D006254 9.4e-57 224.6 287 50.5
FvH4_7g31060 Fragaria vesca HOM05D005084 ORTHO05D006254 1.6e-56 223.8 289 49.1
FAN10G0156 Fragaria x ananassa HOM05D005084 ORTHO05D006254 1.6e-56 223.8 289 48.8
Gorai.008G270500 Gossypium raimondii HOM05D005084 ORTHO05D006254 2.1e-56 223.4 287 50.2
Potri.012G031100 Populus trichocarpa HOM05D005084 ORTHO05D006254 2.1e-56 223.4 287 50.9
TWI39G0830 Tripterygium wilfordii HOM05D005084 ORTHO05D006254 2.1e-56 223.4 285 49.5
Sabra15G0016500 Salix brachista HOM05D005084 ORTHO05D006254 2.7e-56 223.0 285 50.9
FAN10G3897 Fragaria x ananassa HOM05D005084 ORTHO05D006254 3.6e-56 222.6 289 48.4
Manes.14G018500 Manihot esculenta HOM05D005084 ORTHO05D006254 3.6e-56 222.6 275 50.2
FAN03G2915 Fragaria x ananassa HOM05D005084 ORTHO05D006254 2.3e-55 219.9 289 49.5
TAR374G0350 Trochodendron aralioides HOM05D005084 ORTHO05D006254 6.8e-55 218.4 287 50.2
Gohir.A12G251600 Gossypium hirsutum HOM05D005084 ORTHO05D006254 8.8e-55 218.0 287 49.5
Potri.015G022100 Populus trichocarpa HOM05D005084 ORTHO05D006254 8.8e-55 218.0 285 50.9
TAR374G1373 Trochodendron aralioides HOM05D005084 ORTHO05D006254 1.2e-54 217.6 287 49.8
RcHm_v2.0_Chr1g0380131 Rosa chinensis HOM05D005084 ORTHO05D006254 2.0e-54 216.9 288 47.9
Oeu049102.1 Olea europaea HOM05D005084 ORTHO05D006254 2.6e-54 216.5 282 47.2
Phvul.009G137600 Phaseolus vulgaris HOM05D005084 ORTHO05D006254 3.4e-54 216.1 286 47.6
MD07G1285600 Malus domestica HOM05D005084 ORTHO05D006254 4.4e-54 215.7 293 49.5
QL09p010880 Quercus lobata HOM05D005084 ORTHO05D006254 9.8e-54 214.5 286 48.3
FAN01G1592 Fragaria x ananassa HOM05D005084 ORTHO05D006254 1.3e-53 214.2 309 46.6
TPR.G17303 Trifolium pratense HOM05D005084 ORTHO05D006254 1.7e-53 213.8 284 49.6
ClCG05G008730 Citrullus lanatus HOM05D005084 ORTHO05D006254 2.2e-53 213.4 282 50.7
Glyma.04G238200 Glycine max HOM05D005084 ORTHO05D006254 2.8e-53 213.0 283 47.3
Eucgr.A02665 Eucalyptus grandis HOM05D005084 ORTHO05D006254 6.3e-53 211.8 300 48.0
CiPaw.06G007800 Carya illinoinensis HOM05D005084 ORTHO05D006254 8.3e-53 211.5 289 46.7
PGR042G2574 Punica granatum HOM05D005084 ORTHO05D006254 1.1e-52 211.1 286 48.6
Sabra12G0020700 Salix brachista HOM05D005084 ORTHO05D006254 1.1e-52 211.1 285 49.8
VMungo1309G1129 Vigna mungo HOM05D005084 ORTHO05D006254 3.1e-52 209.5 287 48.1
Medtr3g090900 Medicago truncatula HOM05D005084 ORTHO05D006254 5.4e-52 208.8 285 48.4
COL.COLO4_35652 Corchorus olitorius HOM05D005084 ORTHO05D006254 9.1e-52 208.0 289 50.5
Glyma.06G125700 Glycine max HOM05D005084 ORTHO05D006254 9.1e-52 208.0 283 47.7
CANSAT21G1247 Cannabis sativa HOM05D005084 ORTHO05D006254 1.2e-51 207.6 311 46.9
Lalb_Chr11g0066581 Lupinus albus HOM05D005084 ORTHO05D006254 1.2e-51 207.6 286 48.3
Sc19g0001140 Simmondsia chinensis HOM05D005084 ORTHO05D006254 1.2e-51 207.6 278 50.4
TWI23G1148 Tripterygium wilfordii HOM05D005084 ORTHO05D006254 1.6e-51 207.2 285 49.8
DCAR_014530 Daucus carota HOM05D002314 ORTHO05D006254 2.0e-51 206.8 287 48.1
Sed0009531 Sechium edule HOM05D005084 ORTHO05D006254 2.0e-51 206.8 284 48.9
Hma1.2p1_1655F.1_g295960 Hydrangea macrophylla HOM05D005084 ORTHO05D006254 2.7e-51 206.5 286 47.9
Nitab4.5_0014729g0010 Nicotiana tabacum HOM05D005084 ORTHO05D006254 2.7e-51 206.5 289 45.3
Nitab4.5_0002589g0060 Nicotiana tabacum HOM05D005084 ORTHO05D006254 3.5e-51 206.1 290 45.5
GSVIVG01028717001 Vitis vinifera HOM05D005084 ORTHO05D006254 3.5e-51 206.1 289 47.4
Psat5g079640 Pisum sativum HOM05D005084 ORTHO05D006254 4.5e-51 205.7 285 47.0
Sopen03g003330 Solanum pennellii HOM05D005084 ORTHO05D006254 2.2e-50 203.4 286 45.5
Atru.chr1.253 Acer truncatum HOM05D005084 ORTHO05D006254 2.9e-50 203.0 292 46.6
VMungo0647G2005 Vigna mungo HOM05D005084 ORTHO05D006254 2.9e-50 203.0 284 47.2
CSS0047578 Camellia sinensis var. sinensis HOM05D005084 ORTHO05D006254 3.8e-50 202.6 290 49.0
CAN.G108.31 Capsicum annuum HOM05D005084 ORTHO05D006254 6.5e-50 201.8 287 45.3
Glyma.14G160600 Glycine max HOM05D005084 ORTHO05D006254 1.1e-49 201.1 284 46.1
Solyc03g007370.3 Solanum lycopersicum HOM05D005084 ORTHO05D006254 1.1e-49 201.1 286 45.1
CSS0033126 Camellia sinensis var. sinensis HOM05D005084 ORTHO05D006254 1.5e-49 200.7 290 47.2
MBI07_g14395_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.5e-49 199.9 287 46.0
Peaxi162Scf00904g00132 Petunia axillaris HOM05D005084 ORTHO05D006254 2.5e-49 199.9 288 46.2
MSTRG.8499 Avicennia marina HOM05D005084 ORTHO05D006254 5.5e-49 198.7 285 46.0
Ca_16675_v3 Cicer arietinum L. HOM05D005084 ORTHO05D006254 5.5e-49 198.7 286 47.9
Cc02_g01850 Coffea canephora HOM05D005084 ORTHO05D006254 9.4e-49 198.0 300 45.0
Dinv28334 Davidia involucrata HOM05D005084 ORTHO05D006254 9.4e-49 198.0 286 46.2
Lsat_1_v5_gn_4_164620 Lactuca sativa HOM05D005084 ORTHO05D006254 9.4e-49 198.0 285 44.6
Dinv35309 Davidia involucrata HOM05D005084 ORTHO05D006254 2.1e-48 196.8 308 43.2
Nn3g19059 Nelumbo nucifera HOM05D005084 ORTHO05D006254 2.7e-48 196.4 288 44.1
Migut.F01049 Erythranthe guttata HOM05D005084 ORTHO05D006254 8.0e-48 194.9 284 44.7
PGSC0003DMG400009072 Solanum tuberosum HOM05D005084 ORTHO05D006254 8.0e-48 194.9 286 46.9
CsaV3_3G021990 Cucumis sativus L. HOM05D005084 ORTHO05D006254 2.3e-47 193.4 318 42.1
Lj1g0020917 Lotus japonicus HOM05D005084 ORTHO05D006254 2.3e-47 193.4 284 47.5
Phvul.001G061400 Phaseolus vulgaris HOM05D005084 ORTHO05D006254 2.3e-47 193.4 285 46.3
Haze_00115 Corylus avellana HOM05D005084 ORTHO05D006254 2.0e-46 190.3 233 49.4
AUR62019340 Chenopodium quinoa HOM05D005084 ORTHO05D006254 2.6e-46 189.9 288 44.4
Glyma.13G041200 Glycine max HOM05D005084 ORTHO05D006254 4.4e-46 189.1 272 46.0
TAR375G1058 Trochodendron aralioides HOM05D005084 ORTHO05D006254 7.5e-46 188.3 292 44.2
Actinidia34200 Actinidia chinensis HOM05D005084 ORTHO05D006254 1.3e-45 187.6 287 46.3
AUR62006149 Chenopodium quinoa HOM05D005084 ORTHO05D006254 1.3e-45 187.6 289 43.9
Oeu039181.1 Olea europaea HOM05D005084 ORTHO05D006254 2.8e-45 186.4 285 44.6
EL10Ac3g05344 Beta vulgaris HOM05D005084 ORTHO05D006254 3.1e-44 183.0 292 43.5
Rhsim03G0198900 Rhododendron simsii HOM05D005084 ORTHO05D006254 9.1e-44 181.4 286 42.7
PSO384G3210 Papaver somniferum HOM05D005084 ORTHO05D006254 1.6e-43 180.6 289 42.9
SalBow2G2003 Salvia bowleyana HOM05D005084 ORTHO05D006254 1.6e-43 180.6 289 42.9
MSTRG.60 Avicennia marina HOM05D005084 ORTHO05D006254 2.0e-43 180.3 282 44.7
Migut.F00241 Erythranthe guttata HOM05D005084 ORTHO05D006254 3.5e-43 179.5 288 45.1
vmacro06574 Vaccinium macrocarpon HOM05D005084 ORTHO05D006254 4.5e-43 179.1 287 41.8
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.0e-42 177.9 291 41.9
Hund04833 Selenicereus undatus HOM05D005084 ORTHO05D006254 2.9e-42 176.4 287 42.9
Aqoxy5G04167 Aquilegia oxysepala HOM05D005084 ORTHO05D006254 8.6e-42 174.9 279 41.9
PSO135G0769 Papaver somniferum HOM05D005084 ORTHO05D006254 8.6e-42 174.9 289 41.9
SGA_v2.0_scaffold192G40574 Striga asiatica HOM05D005084 ORTHO05D006254 1.5e-41 174.1 285 43.2
Ah.13g069910 Amaranthus hybridus HOM05D005084 ORTHO05D006254 1.2e-40 171.0 276 41.7
Hund11680 Selenicereus undatus HOM05D005084 ORTHO05D006254 3.6e-40 169.5 310 40.0
HanXRQChr07g0206551 Helianthus annuus HOM05D005084 ORTHO05D006254 6.1e-40 168.7 282 42.6
unitig_46.g18814 Utricularia gibba HOM05D005084 ORTHO05D006254 6.1e-40 168.7 287 41.1
unitig_37.g12544 Utricularia gibba HOM05D005084 ORTHO05D006254 8.9e-39 164.9 288 39.9
Lj3A910T45 Lonicera japonica HOM05D005084 ORTHO05D006254 2.0e-38 163.7 289 41.5
CDE09G0664 Ceratophyllum demersum HOM05D005084 ORTHO05D006254 8.6e-34 148.3 283 39.6
CDE08G1386 Ceratophyllum demersum HOM05D005084 ORTHO05D006254 1.1e-28 131.3 279 35.8
MBI07_g26938_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.2e-27 127.9 93 67.7
ATR0589G054 Amborella trichopoda HOM05D005084 ORTHO05D006254 2.2e-21 107.1 239 36.4
Os05g0586600 Oryza sativa ssp. japonica HOM05D005084 ORTHO05D006254 2.2e-21 107.1 196 43.9
Oeu041347.1 Olea europaea HOM05D005084 ORTHO05D006254 2.4e-20 103.6 252 36.9
Zm00001eb297590 Zea mays HOM05D005084 ORTHO05D006254 8.6e-18 95.1 233 39.9
MELO3C026931.2 Cucumis melo HOM05D005084 ORTHO05D006254 1.9e-17 94.0 72 65.3
HPP92_005517 Vanilla planifolia HOM05D005084 ORTHO05D006254 3.3e-17 93.2 228 40.4
MD01G1215400 Malus domestica HOM05D005084 ORTHO05D006254 8.1e-16 88.6 72 61.1
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.1e-15 88.2 72 62.5
HanXRQChr14g0462871 Helianthus annuus HOM05D005084 ORTHO05D006254 1.1e-07 61.6 97 42.3
Mapoly0007s0213 Marchantia polymorpha HOM05D005084 ORTHO05D006254 4.4e-06 56.2 134 33.6
SMO169G0277 Selaginella moellendorffii HOM05D005084 ORTHO05D006254 9.9e-06 55.1 96 38.5


User provided reference genes

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