Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1618.2 798 100.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1582.0 798 97.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1581.2 798 97.4
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1581.2 798 97.4
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1575.8 799 96.9
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1575.1 799 97.1
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1548.5 798 95.7
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1530.4 798 94.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1527.3 798 94.0
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1520.4 799 93.4
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1518.1 799 93.4
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1515.4 799 93.5
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1509.2 798 92.9
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1500.0 800 93.0
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1483.0 797 90.3
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1481.5 797 90.1
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1455.3 798 88.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1397.1 854 81.6
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1375.1 757 88.6
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1363.6 812 81.2
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 808 77.8
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1298.5 807 77.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 806 77.2
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1289.2 808 77.4
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1288.5 808 77.4
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1287.3 808 77.5
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 808 77.4
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 809 76.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 806 77.7
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 806 77.3
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 811 76.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 808 76.9
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1282.7 806 77.0
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 806 76.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 807 76.5
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 808 75.7
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 808 77.0
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 806 76.4
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 817 76.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 805 76.1
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 807 75.8
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 806 76.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1271.9 806 76.4
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 806 76.9
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 807 74.8
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 811 76.1
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 811 75.6
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 800 76.2
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 811 75.6
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 806 75.7
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 811 75.2
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 803 75.6
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 811 75.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 808 75.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 804 75.5
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 810 76.0
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 803 76.0
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 807 74.7
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 807 75.6
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 805 75.3
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 805 75.3
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 806 75.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 806 74.9
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 805 75.3
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 806 75.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 805 75.5
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 804 74.5
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1235.7 811 73.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1230.7 804 73.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 807 73.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 882 68.5
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 796 73.2
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1216.1 798 73.2
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1216.1 801 73.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1213.0 807 73.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 812 72.7
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 804 72.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1205.7 808 72.6
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1203.7 799 72.7
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1203.7 804 72.1
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 828 71.9
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 804 71.8
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 801 72.2
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1194.9 811 72.0
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1192.9 805 72.0
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 800 71.9
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1185.6 808 71.8
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1178.3 805 72.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1176.0 804 69.8
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1175.6 803 71.0
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1171.0 804 70.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 805 69.9
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1162.5 869 67.4
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1160.2 800 70.6
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1158.7 786 72.5
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 807 72.1
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1156.4 857 65.9
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1156.4 801 70.4
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1154.0 805 69.4
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 803 69.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1139.4 810 69.3
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1134.8 818 68.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1115.5 911 62.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1105.1 811 67.6
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1099.0 962 59.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 775 68.6
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 812 66.5
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1089.3 802 66.5
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1084.7 820 65.0
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1078.2 962 59.1
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.1e-302 1040.4 805 64.8
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.5e-291 1005.4 794 62.2
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 6.2e-290 1000.7 812 63.9
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 8.4e-271 937.2 802 59.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.6e-269 932.9 605 73.9
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.4e-233 812.8 787 56.7
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 6.8e-196 688.3 853 45.7
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.3e-178 630.9 381 78.2
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 6.0e-168 595.5 829 41.3
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.8e-151 540.8 802 41.5
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 9.6e-150 535.0 941 35.1
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.5e-145 520.4 843 39.0
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.9e-122 443.7 417 56.1
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.1e-108 397.1 316 61.1
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.2e-105 387.1 244 72.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 4.1e-100 370.2 344 59.0
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 9.5e-89 332.4 236 71.6
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.6e-72 278.5 198 68.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.9e-65 255.0 173 74.6
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.5e-49 202.2 665 27.8
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.0e-47 194.1 141 73.0
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.5e-46 190.7 190 57.9
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 4.9e-37 160.6 90 80.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 3.2e-36 157.9 263 40.7
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.9e-34 151.0 133 52.6
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 7.4e-33 146.7 102 65.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.1e-31 142.9 104 62.5
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.4e-28 132.5 190 43.2
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.9e-28 132.1 100 69.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.2e-28 131.3 120 60.0
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 7.1e-28 130.2 113 50.4
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.1e-28 130.2 89 73.0
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 2.7e-27 128.3 176 43.8
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 2.7e-27 128.3 118 56.8
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 3.7e-24 117.9 259 32.0
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.0e-22 112.1 114 54.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 3.8e-21 107.8 175 38.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 6.1e-19 100.5 65 70.8
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.3e-17 94.4 50 84.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 6.3e-16 90.5 58 74.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-15 89.7 43 88.4
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.4e-15 89.4 73 65.8
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 1.3e-13 82.8 68 60.3
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.1e-12 79.7 143 42.7
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 3.6e-11 74.7 129 38.0
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 3.6e-11 74.7 460 22.6
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 6.1e-11 73.9 60 51.7
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 1.0e-10 73.2 404 23.0
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 4.4e-09 67.8 465 22.2
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 3.7e-08 64.7 57 56.1
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 6.3e-08 63.9 80 46.2
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 2.6e-06 58.5 283 23.7


User provided reference genes

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