Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-54 214.5 99 100.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.4e-42 175.3 80 100.0
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.4e-42 175.3 80 100.0
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.4e-42 175.3 80 100.0
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.4e-42 175.3 80 100.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.4e-42 175.3 80 100.0
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 9.1e-42 173.3 80 98.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 9.1e-42 173.3 80 98.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 9.1e-42 173.3 80 98.8
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 9.1e-42 173.3 80 98.8
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 9.1e-42 173.3 80 98.8
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.5e-41 171.0 80 97.5
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.5e-41 171.0 80 97.5
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.5e-41 171.0 80 97.5
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.5e-41 171.0 80 97.5
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.5e-41 171.0 80 97.5
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.5e-41 171.0 80 97.5
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.3e-40 168.7 80 95.0
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 2.9e-40 168.3 80 95.0
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 5.0e-40 167.5 80 95.0
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.5e-39 166.0 80 92.5
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.2e-39 164.9 80 92.5
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 5.5e-39 164.1 80 92.5
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.2e-38 162.9 80 91.2
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.2e-38 162.9 80 88.8
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 6.1e-38 160.6 80 86.2
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 6.1e-38 160.6 80 86.2
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.0e-37 159.8 80 87.5
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.4e-37 159.5 80 85.0
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.4e-37 159.5 85 83.5
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-37 159.5 80 86.2
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.4e-37 159.5 80 87.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 85.0
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 86.2
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 86.2
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 86.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 86.2
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 85.0
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 85.0
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 86.2
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 85.0
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.8e-37 159.1 80 85.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.3e-37 158.7 80 85.0
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 2.3e-37 158.7 80 87.5
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 3.0e-37 158.3 80 83.8
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 4.0e-37 157.9 80 90.0
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 4.0e-37 157.9 80 83.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 5.2e-37 157.5 79 86.1
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 5.2e-37 157.5 80 83.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 5.2e-37 157.5 80 83.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 5.2e-37 157.5 80 85.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 5.2e-37 157.5 80 85.0
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 6.8e-37 157.1 80 85.0
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 6.8e-37 157.1 80 85.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 6.8e-37 157.1 80 83.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 6.8e-37 157.1 81 82.7
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 8.8e-37 156.8 80 83.8
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 8.8e-37 156.8 80 83.8
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-36 156.4 80 85.0
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.5e-36 156.0 80 83.8
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.5e-36 156.0 80 82.5
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.5e-36 156.0 80 85.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.5e-36 156.0 79 82.3
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.5e-36 156.0 80 83.8
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.5e-36 156.0 80 82.5
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.0e-36 155.6 80 82.5
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.0e-36 155.6 80 85.0
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 2.0e-36 155.6 80 83.8
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.0e-36 155.6 80 82.5
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 82.5
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 83.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 85.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 85.0
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 85.0
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 85.0
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.6e-36 155.2 80 83.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 3.4e-36 154.8 80 83.8
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.4e-36 154.8 80 82.5
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 3.4e-36 154.8 80 83.8
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 83.8
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.4e-36 154.5 79 82.3
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 4.4e-36 154.5 80 81.2
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.7e-36 154.1 80 83.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 5.7e-36 154.1 80 83.8
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 5.7e-36 154.1 80 83.8
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 7.5e-36 153.7 80 80.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 7.5e-36 153.7 80 80.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 7.5e-36 153.7 80 80.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 9.8e-36 153.3 80 82.5
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 9.8e-36 153.3 80 80.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.3e-35 152.9 80 81.2
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.3e-35 152.9 80 83.8
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.7e-35 152.5 80 82.5
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.2e-35 152.1 80 85.0
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.2e-35 152.1 80 81.2
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 2.2e-35 152.1 80 82.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.2e-35 152.1 80 80.0
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 2.8e-35 151.8 80 81.2
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.7e-35 151.4 80 80.0
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 4.9e-35 151.0 80 80.0
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.4e-34 149.4 80 80.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.4e-34 149.4 80 80.0
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.8e-34 149.1 80 83.8
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.8e-34 149.1 80 83.8
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 2.4e-34 148.7 80 81.2
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-34 148.7 80 81.2
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 4.1e-34 147.9 80 80.0
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 5.4e-34 147.5 80 80.0
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 7.0e-34 147.1 80 78.8
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.2e-33 146.4 80 78.8
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 5.9e-33 144.1 73 84.9
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 5.9e-33 144.1 80 77.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 7.8e-33 143.7 80 78.8
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.0e-32 143.3 79 75.9
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 2.9e-32 141.7 80 78.8
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.9e-32 141.7 73 83.6
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 3.8e-32 141.4 80 78.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 3.8e-32 141.4 80 78.8
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-31 139.8 80 77.5
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.6e-30 136.0 80 73.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.6e-30 136.0 80 77.5
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 2.1e-30 135.6 70 80.0
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.0e-29 133.3 73 79.5
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.5e-28 129.4 80 68.8
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.0e-28 129.0 80 67.5
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 2.0e-28 129.0 80 70.0
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 5.7e-28 127.5 80 68.8
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 7.5e-28 127.1 79 68.4
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.7e-27 125.9 80 70.0
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.2e-26 121.7 79 65.8
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 5.9e-25 117.5 79 64.6
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.0e-24 116.7 80 62.5
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 3.0e-24 115.2 63 81.0
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.6e-23 110.9 80 55.0
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 5.6e-23 110.9 64 78.1
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.3e-21 105.5 79 60.8
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 3.4e-20 101.7 71 64.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.4e-18 96.3 53 79.2
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.1e-18 94.7 55 70.9
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 9.2e-18 93.6 53 75.5
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.0e-17 92.4 53 75.5
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 7.8e-17 90.5 53 75.5
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 3.9e-16 88.2 76 51.3
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 5.0e-16 87.8 77 51.9
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 6.6e-16 87.4 53 69.8
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.6e-12 75.5 52 61.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.6e-09 66.2 73 45.2
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.5e-09 65.1 73 45.2
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 6.0e-09 64.3 69 42.0
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.3e-08 62.4 37 73.0
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.1e-06 55.8 40 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 3.6e-06 55.1 69 34.8
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 4.7e-06 54.7 40 52.5
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 4.7e-06 54.7 48 47.9
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 4.7e-06 54.7 66 37.9
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 8.1e-06 53.9 47 46.8


User provided reference genes

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