Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1230.7 636 100.0
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 3.9e-279 964.5 639 81.5
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 1.4e-255 886.3 639 76.2
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 1.4e-255 886.3 639 76.2
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 5.2e-255 884.4 639 76.1
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 5.2e-255 884.4 639 76.4
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 6.7e-255 884.0 639 76.1
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 8.8e-247 857.1 657 72.6
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.7e-245 852.8 639 73.4
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 2.2e-245 852.4 639 72.9
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 3.1e-244 848.6 641 73.9
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 6.5e-242 840.9 639 72.8
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 4.0e-239 831.6 639 71.8
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 2.4e-236 822.4 639 71.7
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 4.7e-232 808.1 639 69.6
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 1.1e-220 770.4 640 66.6
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 1.6e-219 766.5 639 67.0
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.3e-218 762.7 640 67.2
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 3.0e-218 762.3 640 66.9
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 3.0e-218 762.3 640 66.9
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 1.1e-217 760.4 640 66.9
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 1.5e-217 760.0 639 66.4
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 3.3e-217 758.8 641 66.9
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 5.6e-217 758.1 640 66.2
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 9.5e-217 757.3 639 67.0
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 8.1e-216 754.2 640 65.3
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 1.8e-215 753.1 640 65.9
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 2.3e-215 752.7 640 66.2
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 6.8e-215 751.1 639 66.2
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 3.4e-214 748.8 640 65.5
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 5.8e-214 748.0 640 65.8
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 7.5e-214 747.7 639 65.9
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 1.3e-213 746.9 639 65.4
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 2.2e-213 746.1 639 65.3
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 2.9e-213 745.7 640 65.3
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 3.7e-213 745.3 639 66.5
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 6.4e-213 744.6 639 64.8
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 6.4e-213 744.6 640 65.2
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 8.3e-213 744.2 640 65.2
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 1.1e-212 743.8 640 64.5
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 3.2e-212 742.3 639 64.8
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 3.2e-212 742.3 639 64.9
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 5.4e-212 741.5 639 65.3
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.6e-211 740.0 640 64.7
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.6e-211 740.0 640 65.0
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 2.1e-211 739.6 639 65.3
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 6.0e-211 738.0 640 65.0
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 6.0e-211 738.0 639 64.9
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 1.0e-210 737.3 639 64.5
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.7e-210 736.5 639 63.8
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 2.3e-210 736.1 639 64.3
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.1e-209 733.8 632 65.0
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.1e-209 733.8 632 65.0
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 9.5e-209 730.7 640 64.5
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 6.2e-208 728.0 633 63.3
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.1e-207 727.2 639 63.2
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 2.3e-207 726.1 644 63.4
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 4.0e-207 725.3 639 65.3
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 5.2e-207 724.9 629 64.7
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 6.8e-207 724.5 640 63.0
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 2.0e-206 723.0 640 62.8
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 2.0e-206 723.0 643 62.5
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 1.7e-205 719.9 640 62.3
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 2.4e-204 716.1 644 62.3
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 3.2e-204 715.7 640 62.5
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 5.4e-204 714.9 677 61.4
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 5.4e-204 714.9 640 62.2
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 7.8e-203 711.1 630 63.0
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 2.3e-202 709.5 640 62.2
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 3.9e-202 708.8 644 62.3
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 6.6e-202 708.0 629 64.7
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 1.1e-201 707.2 643 64.9
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 1.1e-201 707.2 640 61.2
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 1.1e-201 707.2 640 61.2
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 1.5e-201 706.8 644 61.6
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.9e-201 706.4 643 61.0
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.9e-201 706.4 640 62.7
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 1.2e-200 703.7 645 64.8
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 2.1e-200 703.0 630 61.6
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 2.8e-200 702.6 640 62.8
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 3.6e-200 702.2 640 61.4
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 4.7e-200 701.8 656 60.2
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 6.2e-200 701.4 640 61.2
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.8e-199 699.9 640 60.5
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 8.9e-199 697.6 641 61.2
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 7.6e-198 694.5 596 64.6
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 7.6e-198 694.5 639 60.4
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 5.4e-196 688.3 648 60.5
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 1.7e-194 683.3 626 61.5
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 5.1e-194 681.8 651 59.8
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 1.5e-193 680.2 644 59.9
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.1e-191 674.1 649 56.9
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 3.1e-191 672.5 559 66.0
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 5.3e-191 671.8 640 59.5
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 9.9e-190 667.5 639 61.5
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 9.9e-190 667.5 639 61.5
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 8.4e-189 664.5 641 59.1
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 1.4e-188 663.7 633 59.9
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 2.4e-183 646.4 629 59.5
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 5.3e-183 645.2 649 57.0
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 4.5e-182 642.1 445 78.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.9e-181 639.4 632 57.9
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 4.9e-181 638.6 628 59.6
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 6.4e-181 638.3 641 56.9
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 3.9e-178 629.0 523 64.8
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 6.7e-178 628.2 630 58.4
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 6.7e-178 628.2 524 65.6
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 2.6e-174 616.3 648 54.6
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 2.6e-174 616.3 593 59.2
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.3e-173 614.0 465 69.5
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 1.6e-171 607.1 668 54.2
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 1.2e-166 590.9 641 51.2
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.2e-164 582.4 685 52.6
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 5.5e-164 582.0 648 51.7
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.7e-161 571.2 614 55.7
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.3e-160 570.9 640 54.4
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 7.7e-158 561.6 671 52.0
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 3.2e-156 556.2 551 58.6
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 1.2e-155 554.3 650 47.8
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 8.8e-154 548.1 644 48.0
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 7.4e-145 518.5 568 49.8
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 2.2e-144 516.9 478 59.2
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 3.1e-143 513.1 728 42.9
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 4.5e-142 509.2 640 50.0
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.6e-139 500.7 672 49.0
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 5.7e-129 465.7 572 50.5
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 9.1e-127 458.4 359 69.1
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.0e-125 454.9 441 61.0
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 6.1e-123 445.7 660 45.3
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 8.8e-122 441.8 486 54.3
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 2.7e-110 403.7 422 55.0
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 6.8e-106 389.0 632 43.0
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 4.6e-102 376.3 386 58.0
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 7.5e-97 359.0 649 37.9
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 2.1e-75 287.7 228 65.4
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 9.3e-71 272.3 400 47.2
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 2.7e-70 270.8 677 30.7
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 2.6e-65 254.2 193 68.4
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 9.9e-65 252.3 209 61.7
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 4.3e-60 236.9 266 51.9
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 3.1e-58 230.7 673 28.2
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 7.6e-49 199.5 232 54.3
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.0e-40 170.2 151 59.6
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 1.5e-36 158.7 661 25.0
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 7.2e-31 139.8 89 68.5
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 1.1e-28 132.5 156 53.2
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 9.7e-28 129.4 181 48.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.7e-27 128.6 129 55.8
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.2e-27 128.3 87 70.1
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 5.2e-21 107.1 67 76.1
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 1.2e-20 105.9 109 58.7
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 2.0e-20 105.1 109 56.9
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 1.6e-17 95.5 79 57.0
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 4.5e-17 94.0 112 52.7
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 4.5e-17 94.0 87 60.9
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 4.5e-17 94.0 87 60.9
Oeu063006.1 Olea europaea HOM05D001351 ORTHO05D001203 1.3e-16 92.4 69 68.1
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 3.8e-16 90.9 87 59.8
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 2.1e-14 85.1 89 56.2
SHI21343 Sapria himalayana HOM05D000002 ORTHO05D000001 6.8e-13 80.1 60 76.7
Manes.08G058900 Manihot esculenta HOM05D003391 ORTHO05D250822 4.4e-12 77.4 68 61.8
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 5.4e-10 70.5 89 51.7
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 1.1e-07 62.8 38 71.1


User provided reference genes

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