Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14662 Brassica carinata HOM05D002494 ORTHO05D002673 2.2e-129 465.7 242 100.0
BcaC05g30043 Brassica carinata HOM05D002494 ORTHO05D002673 9.3e-88 327.4 201 88.6
C05p60970 Brassica napus HOM05D002494 ORTHO05D002673 9.3e-72 274.2 201 78.1
BolC5t34752H Brassica oleracea HOM05D002494 ORTHO05D002673 6.0e-71 271.6 201 78.1
BraA05t22893Z Brassica rapa HOM05D002494 ORTHO05D002673 7.9e-71 271.2 204 76.5
AL3G17180 Arabidopsis lyrata HOM05D002494 ORTHO05D002673 1.9e-69 266.5 200 73.5
Sp3g05200 Schrenkiella parvula HOM05D002494 ORTHO05D002673 3.3e-69 265.8 200 75.0
A05p41740 Brassica napus HOM05D002494 ORTHO05D002673 9.6e-69 264.2 201 76.6
Thhalv10019892m.g Eutrema salsugineum HOM05D002494 ORTHO05D002673 2.8e-68 262.7 200 74.5
AT3G06290 Arabidopsis thaliana HOM05D002494 ORTHO05D002673 8.1e-68 261.2 200 72.5
BolC3t16488H Brassica oleracea HOM05D002494 ORTHO05D002673 5.3e-67 258.5 200 74.0
C03p42080 Brassica napus HOM05D002494 ORTHO05D002673 3.4e-66 255.8 200 73.5
A03p34620 Brassica napus HOM05D002494 ORTHO05D002673 1.3e-65 253.8 200 73.0
BraA03t12638Z Brassica rapa HOM05D002494 ORTHO05D002673 1.3e-65 253.8 200 73.0
Carub.0003s0571 Capsella rubella HOM05D002494 ORTHO05D002673 1.9e-64 250.0 200 71.5
BcaB03g14668 Brassica carinata HOM05D002494 ORTHO05D002673 2.7e-63 246.1 191 72.8
Aa31LG5G16810 Aethionema arabicum HOM05D002494 ORTHO05D002673 1.7e-57 226.9 200 65.5
BcaC05g29801 Brassica carinata HOM05D002494 ORTHO05D002673 5.3e-51 205.3 201 64.7
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 1.4e-38 164.1 200 53.5
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 7.7e-26 121.7 210 44.3
Duzib212G0707 Durio zibethinus HOM05D002494 ORTHO05D002673 2.7e-23 113.2 206 42.7
CSS0005255 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.3e-22 110.2 208 41.3
CSS0019247 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 4.0e-22 109.4 208 41.3
ClCG05G005560 Citrullus lanatus HOM05D002494 ORTHO05D002673 5.2e-22 109.0 206 42.7
COL.COLO4_13973 Corchorus olitorius HOM05D002494 ORTHO05D002673 8.8e-22 108.2 202 40.6
Gohir.A09G232000 Gossypium hirsutum HOM05D002494 ORTHO05D002673 5.7e-21 105.5 208 41.3
RcHm_v2.0_Chr4g0419781 Rosa chinensis HOM05D002494 ORTHO05D002673 2.2e-20 103.6 230 37.8
Rhsim04G0212900 Rhododendron simsii HOM05D002494 ORTHO05D002673 2.8e-20 103.2 208 40.4
vmacro08242 Vaccinium macrocarpon HOM05D002494 ORTHO05D002673 8.3e-20 101.7 207 40.1
Atru.chr4.2700 Acer truncatum HOM05D002494 ORTHO05D002673 1.1e-19 101.3 199 40.7
MELO3C006582.2 Cucumis melo HOM05D002494 ORTHO05D002673 1.4e-19 100.9 206 40.8
Dinv38353 Davidia involucrata HOM05D002494 ORTHO05D002673 1.8e-19 100.5 209 40.7
CANSAT78G1223 Cannabis sativa HOM05D002494 ORTHO05D002673 2.4e-19 100.1 210 41.0
FvH4_4g13920 Fragaria vesca HOM05D002494 ORTHO05D002673 2.4e-19 100.1 228 37.3
AUR62011813 Chenopodium quinoa HOM05D002494 ORTHO05D002673 4.1e-19 99.4 206 42.7
TAR365G0297 Trochodendron aralioides HOM05D002494 ORTHO05D002673 4.1e-19 99.4 204 38.2
Actinidia40212 Actinidia chinensis HOM05D002494 ORTHO05D002673 5.4e-19 99.0 207 40.6
FAN22G2205 Fragaria x ananassa HOM05D002494 ORTHO05D002673 5.4e-19 99.0 223 37.2
FAN12G0871 Fragaria x ananassa HOM05D002494 ORTHO05D002673 7.0e-19 98.6 221 37.6
Gohir.D09G233100 Gossypium hirsutum HOM05D002494 ORTHO05D002673 7.0e-19 98.6 208 40.4
Prupe.1G147400 Prunus persica HOM05D002494 ORTHO05D002673 7.0e-19 98.6 215 39.5
FAN17G1311 Fragaria x ananassa HOM05D002494 ORTHO05D002673 9.1e-19 98.2 230 36.5
Manes.03G187900 Manihot esculenta HOM05D002494 ORTHO05D002673 9.1e-19 98.2 210 40.5
CSS0038359 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 1.2e-18 97.8 208 39.9
Gorai.006G256000 Gossypium raimondii HOM05D002494 ORTHO05D002673 1.6e-18 97.4 208 39.9
GSVIVG01017853001 Vitis vinifera HOM05D002494 ORTHO05D002673 1.6e-18 97.4 203 38.4
CiPaw.02G089600 Carya illinoinensis HOM05D002494 ORTHO05D002673 2.0e-18 97.1 209 38.3
Dinv44457 Davidia involucrata HOM05D002494 ORTHO05D002673 2.0e-18 97.1 216 41.2
Eucgr.H03640 Eucalyptus grandis HOM05D002494 ORTHO05D002673 2.0e-18 97.1 207 41.5
Potri.010G028200 Populus trichocarpa HOM05D002494 ORTHO05D002673 2.0e-18 97.1 207 39.1
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 4.5e-18 95.9 204 40.7
AUR62024657 Chenopodium quinoa HOM05D002494 ORTHO05D002673 5.9e-18 95.5 207 41.5
Aqoxy2G03189 Aquilegia oxysepala HOM05D002494 ORTHO05D002673 7.7e-18 95.1 203 39.4
Cfa015542 Carpinus fangiana HOM05D002494 ORTHO05D002673 7.7e-18 95.1 204 41.7
Haze_01007 Corylus avellana HOM05D002494 ORTHO05D002673 1.0e-17 94.7 203 40.4
Sed0003410 Sechium edule HOM05D002494 ORTHO05D002673 1.3e-17 94.4 203 39.4
MD16G1179800 Malus domestica HOM05D002494 ORTHO05D002673 1.7e-17 94.0 228 37.7
MD13G1178300 Malus domestica HOM05D002494 ORTHO05D002673 2.2e-17 93.6 228 37.7
Glyma.15G100800 Glycine max HOM05D002494 ORTHO05D002673 1.9e-16 90.5 205 40.5
Lalb_Chr15g0087191 Lupinus albus HOM05D002494 ORTHO05D002673 4.2e-16 89.4 204 39.7
Sabra10G0012600 Salix brachista HOM05D002494 ORTHO05D002673 4.2e-16 89.4 208 38.9
arahy.Tifrunner.gnm1.ann1.2UVC2V Arachis hypogaea HOM05D002494 ORTHO05D002673 1.2e-15 87.8 164 40.9
Ah.02g112310 Amaranthus hybridus HOM05D002494 ORTHO05D002673 2.1e-15 87.0 205 39.0
Peaxi162Scf00592g00111 Petunia axillaris HOM05D002494 ORTHO05D002673 3.6e-15 86.3 225 35.1
Ciclev10004135m.g Citrus clementina HOM05D002494 ORTHO05D002673 8.0e-15 85.1 181 38.7
DCAR_027134 Daucus carota HOM05D002494 ORTHO05D002673 8.0e-15 85.1 175 38.3
Glyma.13G211900 Glycine max HOM05D002494 ORTHO05D002673 1.0e-14 84.7 205 39.5
Phvul.006G158000 Phaseolus vulgaris HOM05D002494 ORTHO05D002673 1.0e-14 84.7 206 38.8
Medtr2g020960 Medicago truncatula HOM05D002494 ORTHO05D002673 1.8e-14 84.0 197 39.1
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 1.8e-14 84.0 205 35.6
EL10As5g23527 Beta vulgaris HOM05D002494 ORTHO05D002673 2.3e-14 83.6 219 38.4
arahy.Tifrunner.gnm1.ann1.I64MY8 Arachis hypogaea HOM05D002494 ORTHO05D002673 3.0e-14 83.2 203 36.0
Hund09628 Selenicereus undatus HOM05D002494 ORTHO05D002673 3.0e-14 83.2 166 41.0
VMungo0540G1417 Vigna mungo HOM05D002494 ORTHO05D002673 4.0e-14 82.8 204 36.8
Lj6g0008158 Lotus japonicus HOM05D002494 ORTHO05D002673 5.2e-14 82.4 207 37.2
TPR.G18023 Trifolium pratense HOM05D002494 ORTHO05D002673 6.8e-14 82.0 163 40.5
Lj6C665T16 Lonicera japonica HOM05D002494 ORTHO05D002673 1.5e-13 80.9 242 33.5
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 1.5e-13 80.9 205 35.1
SHI00347 Sapria himalayana HOM05D002494 ORTHO05D002673 2.0e-13 80.5 164 39.0
Oeu032696.1 Olea europaea HOM05D002494 ORTHO05D002673 5.7e-13 79.0 205 33.2
PSO170G5860 Papaver somniferum HOM05D002494 ORTHO05D002673 5.7e-13 79.0 165 41.8
PSO302G0174 Papaver somniferum HOM05D002494 ORTHO05D002673 1.3e-12 77.8 202 37.6
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 2.8e-12 76.6 205 37.6
SalBow2G0767 Salvia bowleyana HOM05D002494 ORTHO05D002673 3.7e-12 76.3 195 40.5
Cc03_g02770 Coffea canephora HOM05D002494 ORTHO05D002673 6.3e-12 75.5 210 35.7
Migut.G00286 Erythranthe guttata HOM05D002494 ORTHO05D002673 6.3e-12 75.5 206 35.4
Nn3g21175 Nelumbo nucifera HOM05D002494 ORTHO05D002673 6.3e-12 75.5 196 38.3
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 8.3e-12 75.1 244 33.6
Nitab4.5_0001505g0010 Nicotiana tabacum HOM05D002494 ORTHO05D002673 1.1e-11 74.7 168 36.9
Psat1g185440 Pisum sativum HOM05D002494 ORTHO05D002673 1.4e-11 74.3 203 38.4
Sc13g0003790 Simmondsia chinensis HOM05D002494 ORTHO05D002673 2.4e-11 73.6 208 37.0
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 3.1e-11 73.2 160 40.6
ECA233G5784 Erigeron canadensis HOM05D002494 ORTHO05D002673 4.1e-11 72.8 202 34.2
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 5.4e-11 72.4 208 32.2
SGA_v2.0_scaffold237G43852 Striga asiatica HOM05D002494 ORTHO05D002673 9.2e-11 71.6 207 34.8
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 3.5e-10 69.7 127 39.4
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 5.9e-10 68.9 156 36.5
Lsat_1_v5_gn_6_69301 Lactuca sativa HOM05D002494 ORTHO05D002673 1.0e-09 68.2 167 35.3
Zm00001eb329290 Zea mays HOM05D002494 ORTHO05D002673 1.9e-08 63.9 187 36.4
Nitab4.5_0000010g0140 Nicotiana tabacum HOM05D002494 ORTHO05D002673 2.5e-08 63.5 48 66.7
MSTRG.3973 Avicennia marina HOM05D002494 ORTHO05D002673 4.3e-08 62.8 161 36.0
Actinidia23456 Actinidia chinensis HOM05D002494 ORTHO05D002673 7.3e-08 62.0 35 85.7
HPP92_013671 Vanilla planifolia HOM05D002494 ORTHO05D002673 9.5e-08 61.6 201 33.3
SEGI_28422 Sequoiadendron giganteum HOM05D002494 ORTHO05D002673 1.0e-06 58.2 35 80.0
HPP92_013653 Vanilla planifolia HOM05D002494 ORTHO05D002673 1.4e-06 57.8 200 32.5
Zm00001eb329340 Zea mays HOM05D002494 ORTHO05D002673 4.0e-06 56.2 35 77.1
Cpa.g.sc16.69 Carica papaya HOM05D002494 ORTHO05D002673 8.9e-06 55.1 110 41.8
Pp3c3_29590 Physcomitrium patens HOM05D002494 ORTHO05D002673 8.9e-06 55.1 195 31.3


User provided reference genes

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