Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14661 Brassica carinata HOM05D002494 ORTHO05D002673 3.0e-298 1027.7 513 100.0
BcaC05g30043 Brassica carinata HOM05D002494 ORTHO05D002673 4.4e-196 688.3 747 56.2
BraA05t22893Z Brassica rapa HOM05D002494 ORTHO05D002673 2.5e-175 619.4 724 52.2
A05p41740 Brassica napus HOM05D002494 ORTHO05D002673 5.6e-175 618.2 724 52.2
C05p60980 Brassica napus HOM05D002494 ORTHO05D002673 5.0e-168 595.1 561 61.1
A03p34620 Brassica napus HOM05D002494 ORTHO05D002673 3.5e-161 572.4 733 49.1
BraA03t12638Z Brassica rapa HOM05D002494 ORTHO05D002673 3.5e-161 572.4 733 49.1
Sp3g05200 Schrenkiella parvula HOM05D002494 ORTHO05D002673 1.9e-159 566.6 734 48.9
C03p42080 Brassica napus HOM05D002494 ORTHO05D002673 7.3e-159 564.7 733 48.4
BolC3t16488H Brassica oleracea HOM05D002494 ORTHO05D002673 1.2e-158 563.9 733 48.4
BcaB03g14668 Brassica carinata HOM05D002494 ORTHO05D002673 2.2e-155 553.1 739 47.8
Thhalv10019892m.g Eutrema salsugineum HOM05D002494 ORTHO05D002673 1.2e-153 547.4 734 47.4
BcaC05g30040 Brassica carinata HOM05D002494 ORTHO05D002673 1.7e-152 543.5 702 48.7
AL3G17180 Arabidopsis lyrata HOM05D002494 ORTHO05D002673 4.4e-148 528.9 741 46.3
BcaC05g29801 Brassica carinata HOM05D002494 ORTHO05D002673 2.3e-144 516.5 704 48.6
AT3G06290 Arabidopsis thaliana HOM05D002494 ORTHO05D002673 3.6e-142 509.2 743 44.8
Carub.0003s0571 Capsella rubella HOM05D002494 ORTHO05D002673 3.5e-137 492.7 740 44.1
CARHR080780 Cardamine hirsuta HOM05D002494 ORTHO05D002673 6.9e-125 451.8 652 45.2
Aa31LG5G16810 Aethionema arabicum HOM05D002494 ORTHO05D002673 4.6e-113 412.5 742 38.9
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 6.3e-94 349.0 729 36.6
Cpa.g.sc16.69 Carica papaya HOM05D002494 ORTHO05D002673 9.8e-63 245.4 719 31.0
Prupe.1G147400 Prunus persica HOM05D002494 ORTHO05D002673 4.7e-57 226.5 735 29.1
MD13G1178600 Malus domestica HOM05D002494 ORTHO05D002673 6.8e-56 222.6 703 30.4
Atru.chr4.2700 Acer truncatum HOM05D002494 ORTHO05D002673 1.3e-54 218.4 731 29.0
Haze_01007 Corylus avellana HOM05D002494 ORTHO05D002673 1.7e-54 218.0 692 29.3
Cfa015542 Carpinus fangiana HOM05D002494 ORTHO05D002673 1.9e-53 214.5 692 30.1
Manes.03G187900 Manihot esculenta HOM05D002494 ORTHO05D002673 1.9e-53 214.5 697 29.0
Sabra10G0012600 Salix brachista HOM05D002494 ORTHO05D002673 2.4e-53 214.2 707 29.4
MD16G1179800 Malus domestica HOM05D002494 ORTHO05D002673 1.2e-52 211.8 731 29.4
Dinv44457 Davidia involucrata HOM05D002494 ORTHO05D002673 1.7e-51 208.0 686 30.2
Gohir.D09G233100 Gossypium hirsutum HOM05D002494 ORTHO05D002673 6.6e-51 206.1 767 27.8
Gorai.006G256000 Gossypium raimondii HOM05D002494 ORTHO05D002673 6.6e-51 206.1 767 27.8
Potri.010G028200 Populus trichocarpa HOM05D002494 ORTHO05D002673 1.5e-50 204.9 709 28.6
CiPaw.02G089600 Carya illinoinensis HOM05D002494 ORTHO05D002673 3.3e-50 203.8 702 28.9
Ciclev10004135m.g Citrus clementina HOM05D002494 ORTHO05D002673 9.5e-50 202.2 710 27.5
CANSAT78G1223 Cannabis sativa HOM05D002494 ORTHO05D002673 2.1e-49 201.1 721 29.5
Actinidia40212 Actinidia chinensis HOM05D002494 ORTHO05D002673 1.1e-48 198.7 707 28.4
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 1.4e-48 198.4 753 27.6
RcHm_v2.0_Chr4g0419781 Rosa chinensis HOM05D002494 ORTHO05D002673 4.0e-48 196.8 748 27.4
Gohir.A09G232000 Gossypium hirsutum HOM05D002494 ORTHO05D002673 1.5e-47 194.9 736 28.0
CSS0019247 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.0e-47 194.5 706 27.8
Dinv38353 Davidia involucrata HOM05D002494 ORTHO05D002673 2.6e-47 194.1 709 27.4
TAR365G0297 Trochodendron aralioides HOM05D002494 ORTHO05D002673 2.2e-46 191.0 710 28.7
FAN22G2205 Fragaria x ananassa HOM05D002494 ORTHO05D002673 2.9e-46 190.7 746 27.6
FAN17G1311 Fragaria x ananassa HOM05D002494 ORTHO05D002673 3.7e-46 190.3 745 27.2
Lj6C665T16 Lonicera japonica HOM05D002494 ORTHO05D002673 9.2e-45 185.7 712 27.2
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 2.1e-44 184.5 762 26.6
CSS0038359 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 3.5e-44 183.7 691 28.7
CSS0005255 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 6.0e-44 183.0 691 28.5
vmacro08242 Vaccinium macrocarpon HOM05D002494 ORTHO05D002673 7.8e-44 182.6 719 27.7
COL.COLO4_13973 Corchorus olitorius HOM05D002494 ORTHO05D002673 1.7e-43 181.4 760 26.4
Psat1g185440 Pisum sativum HOM05D002494 ORTHO05D002673 1.7e-43 181.4 692 27.2
Cc03_g02770 Coffea canephora HOM05D002494 ORTHO05D002673 6.6e-43 179.5 692 27.3
FAN12G0871 Fragaria x ananassa HOM05D002494 ORTHO05D002673 6.6e-43 179.5 745 27.2
SHI00347 Sapria himalayana HOM05D002494 ORTHO05D002673 6.6e-43 179.5 630 27.3
Duzib212G0707 Durio zibethinus HOM05D002494 ORTHO05D002673 5.6e-42 176.4 760 26.3
FvH4_4g13920 Fragaria vesca HOM05D002494 ORTHO05D002673 7.3e-42 176.0 745 27.1
Nn3g21175 Nelumbo nucifera HOM05D002494 ORTHO05D002673 7.3e-42 176.0 713 26.1
Oeu032696.1 Olea europaea HOM05D002494 ORTHO05D002673 9.5e-42 175.6 691 26.9
Lj6g0008158 Lotus japonicus HOM05D002494 ORTHO05D002673 2.1e-41 174.5 694 30.5
Glyma.13G211900 Glycine max HOM05D002494 ORTHO05D002673 2.8e-41 174.1 687 27.8
Medtr2g020960 Medicago truncatula HOM05D002494 ORTHO05D002673 2.8e-41 174.1 690 27.4
Glyma.15G100800 Glycine max HOM05D002494 ORTHO05D002673 3.1e-40 170.6 688 28.1
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 8.9e-40 169.1 718 27.3
Rhsim04G0212900 Rhododendron simsii HOM05D002494 ORTHO05D002673 4.4e-39 166.8 729 26.6
TPR.G18023 Trifolium pratense HOM05D002494 ORTHO05D002673 4.4e-39 166.8 702 26.9
PSO170G5860 Papaver somniferum HOM05D002494 ORTHO05D002673 5.8e-39 166.4 709 26.0
VMungo0540G1417 Vigna mungo HOM05D002494 ORTHO05D002673 5.8e-39 166.4 682 27.9
arahy.Tifrunner.gnm1.ann1.I64MY8 Arachis hypogaea HOM05D002494 ORTHO05D002673 7.6e-39 166.0 690 27.2
arahy.Tifrunner.gnm1.ann1.2UVC2V Arachis hypogaea HOM05D002494 ORTHO05D002673 1.7e-38 164.9 683 27.2
DCAR_027134 Daucus carota HOM05D002494 ORTHO05D002673 1.7e-38 164.9 697 26.1
Nitab4.5_0000010g0140 Nicotiana tabacum HOM05D002494 ORTHO05D002673 2.2e-38 164.5 690 27.8
GSVIVG01017853001 Vitis vinifera HOM05D002494 ORTHO05D002673 4.9e-38 163.3 666 27.6
Actinidia23457 Actinidia chinensis HOM05D002494 ORTHO05D002673 8.4e-38 162.5 406 31.0
Eucgr.H03640 Eucalyptus grandis HOM05D002494 ORTHO05D002673 1.9e-37 161.4 729 26.9
Peaxi162Scf00592g00111 Petunia axillaris HOM05D002494 ORTHO05D002673 2.4e-37 161.0 724 25.8
Sed0003410 Sechium edule HOM05D002494 ORTHO05D002673 2.4e-37 161.0 707 25.3
Phvul.006G158000 Phaseolus vulgaris HOM05D002494 ORTHO05D002673 9.2e-37 159.1 687 28.4
PSO302G0174 Papaver somniferum HOM05D002494 ORTHO05D002673 1.2e-36 158.7 720 25.7
ATR0626G271 Amborella trichopoda HOM05D002494 ORTHO05D002673 3.5e-36 157.1 698 25.9
Lalb_Chr15g0087191 Lupinus albus HOM05D002494 ORTHO05D002673 1.3e-35 155.2 696 26.6
Aqoxy2G03189 Aquilegia oxysepala HOM05D002494 ORTHO05D002673 2.3e-35 154.5 719 26.1
Sc13g0003790 Simmondsia chinensis HOM05D002494 ORTHO05D002673 2.3e-35 154.5 744 26.1
SalBow2G0767 Salvia bowleyana HOM05D002494 ORTHO05D002673 1.9e-34 151.4 709 25.4
Hund09628 Selenicereus undatus HOM05D002494 ORTHO05D002673 1.9e-34 151.4 749 25.5
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 5.6e-34 149.8 730 24.7
AUR62011813 Chenopodium quinoa HOM05D002494 ORTHO05D002673 7.3e-34 149.4 752 26.5
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 7.3e-34 149.4 715 26.2
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 2.8e-33 147.5 742 26.1
MSTRG.3973 Avicennia marina HOM05D002494 ORTHO05D002673 3.6e-33 147.1 711 25.7
ClCG05G005560 Citrullus lanatus HOM05D002494 ORTHO05D002673 3.6e-33 147.1 741 24.4
Migut.G00286 Erythranthe guttata HOM05D002494 ORTHO05D002673 6.2e-33 146.4 705 25.5
Nitab4.5_0001505g0010 Nicotiana tabacum HOM05D002494 ORTHO05D002673 3.1e-32 144.1 381 31.0
ECA233G5784 Erigeron canadensis HOM05D002494 ORTHO05D002673 4.0e-32 143.7 695 24.6
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 6.9e-32 142.9 669 25.4
Lsat_1_v5_gn_6_69301 Lactuca sativa HOM05D002494 ORTHO05D002673 1.5e-31 141.7 685 26.1
Ca_00591_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 6.4e-30 136.3 288 32.3
AUR62024657 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.1e-29 135.6 748 25.1
Ah.02g112310 Amaranthus hybridus HOM05D002494 ORTHO05D002673 2.1e-28 131.3 738 25.9
MELO3C006582.2 Cucumis melo HOM05D002494 ORTHO05D002673 2.3e-27 127.9 762 24.3
SGA_v2.0_scaffold237G43852 Striga asiatica HOM05D002494 ORTHO05D002673 2.3e-27 127.9 708 23.7
EL10As5g23527 Beta vulgaris HOM05D002494 ORTHO05D002673 4.3e-26 123.6 742 25.3
Zm00001eb329350 Zea mays HOM05D002494 ORTHO05D002673 4.8e-25 120.2 325 27.1
Zm00001eb329290 Zea mays HOM05D002494 ORTHO05D002673 6.9e-24 116.3 325 26.8
Zm00001eb329320 Zea mays HOM05D002494 ORTHO05D002673 3.4e-23 114.0 325 26.5
HPP92_013671 Vanilla planifolia HOM05D002494 ORTHO05D002673 2.1e-17 94.7 482 26.1
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 1.4e-16 92.0 634 23.7
unitig_748.g8564 Utricularia gibba HOM05D002494 ORTHO05D002673 1.9e-13 81.6 176 33.5
Zm00001eb329310 Zea mays HOM05D002494 ORTHO05D002673 3.2e-13 80.9 118 33.1
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 1.0e-11 75.9 459 24.8
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 9.6e-10 69.3 121 30.6
Actinidia23456 Actinidia chinensis HOM05D002494 ORTHO05D002673 1.1e-08 65.9 121 39.7
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 5.3e-08 63.5 246 28.9
Ca_30832_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 9.0e-08 62.8 246 28.9
Pp3c3_29590 Physcomitrium patens HOM05D002494 ORTHO05D002673 1.3e-06 58.9 175 30.9
Zm00001eb329300 Zea mays HOM05D002494 ORTHO05D002673 2.2e-06 58.2 101 36.6
Mapoly0096s0011 Marchantia polymorpha HOM05D002494 ORTHO05D002673 2.9e-06 57.8 121 34.7
SEGI_28422 Sequoiadendron giganteum HOM05D002494 ORTHO05D002673 3.8e-06 57.4 494 22.3


User provided reference genes

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