Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13430 Brassica carinata HOM05D000835 ORTHO05D004825 1.7e-58 229.2 117 100.0
BolC8t47034H Brassica oleracea HOM05D000835 ORTHO05D004825 2.0e-56 222.2 116 95.7
BraA08t35515Z Brassica rapa HOM05D000835 ORTHO05D004825 2.0e-56 222.2 116 95.7
A08p36080 Brassica napus HOM05D000835 ORTHO05D004825 1.7e-55 219.2 116 94.8
C08p02430 Brassica napus HOM05D000835 ORTHO05D004825 2.2e-55 218.8 116 94.8
Thhalv10006688m.g Eutrema salsugineum HOM05D000835 ORTHO05D004825 1.2e-51 206.5 116 90.5
CARHR005750 Cardamine hirsuta HOM05D000835 ORTHO05D004825 2.6e-51 205.3 116 89.7
C08p51330 Brassica napus HOM05D000835 ORTHO05D004825 1.7e-50 202.6 118 88.1
BolC8t52659H Brassica oleracea HOM05D000835 ORTHO05D004825 1.7e-50 202.6 118 88.1
A06p43370 Brassica napus HOM05D000835 ORTHO05D004825 2.2e-50 202.2 116 87.9
BraA06t27223Z Brassica rapa HOM05D000835 ORTHO05D004825 2.2e-50 202.2 116 87.9
Sp1g05030 Schrenkiella parvula HOM05D000835 ORTHO05D004825 2.8e-50 201.8 116 90.5
BcaC07g42078 Brassica carinata HOM05D000835 ORTHO05D004825 3.7e-50 201.4 117 88.9
Aa31LG9G5170 Aethionema arabicum HOM05D000835 ORTHO05D004825 1.4e-49 199.5 116 87.9
AT1G06220 Arabidopsis thaliana HOM05D000835 ORTHO05D004825 7.0e-49 197.2 116 84.5
AL1G16200 Arabidopsis lyrata HOM05D000835 ORTHO05D004825 9.1e-49 196.8 116 85.3
THA.LOC104815391 Tarenaya hassleriana HOM05D000835 ORTHO05D004825 8.5e-47 190.3 116 81.0
Carub.0006s3241 Capsella rubella HOM05D000835 ORTHO05D004825 4.7e-45 184.5 116 81.0
Actinidia31056 Actinidia chinensis HOM05D000835 ORTHO05D004825 3.7e-42 174.9 116 74.1
Manes.14G137900 Manihot esculenta HOM05D000835 ORTHO05D004825 3.7e-42 174.9 116 74.1
Rhsim09G0132100 Rhododendron simsii HOM05D000835 ORTHO05D004825 8.3e-42 173.7 118 75.4
vmacro10387 Vaccinium macrocarpon HOM05D000835 ORTHO05D004825 8.3e-42 173.7 118 75.4
COL.COLO4_19855 Corchorus olitorius HOM05D000835 ORTHO05D004825 1.4e-41 172.9 118 78.8
Cpa.g.sc7.82 Carica papaya HOM05D000835 ORTHO05D004825 1.8e-41 172.6 116 77.6
TWI34G0205 Tripterygium wilfordii HOM05D000835 ORTHO05D004825 1.8e-41 172.6 116 75.0
Atru.chr1.3223 Acer truncatum HOM05D000835 ORTHO05D004825 2.4e-41 172.2 116 78.4
CsaV3_2G003560 Cucumis sativus L. HOM05D000835 ORTHO05D004825 3.1e-41 171.8 116 75.0
CiPaw.16G118100 Carya illinoinensis HOM05D000835 ORTHO05D004825 4.1e-41 171.4 116 77.6
Sed0019814 Sechium edule HOM05D000835 ORTHO05D004825 4.1e-41 171.4 116 73.3
CAN.G518.24 Capsicum annuum HOM05D000835 ORTHO05D004825 5.4e-41 171.0 116 74.1
Potri.018G114900 Populus trichocarpa HOM05D000835 ORTHO05D004825 5.4e-41 171.0 116 73.3
Gohir.A09G095700 Gossypium hirsutum HOM05D000835 ORTHO05D004825 7.0e-41 170.6 118 73.7
Gohir.D09G095400 Gossypium hirsutum HOM05D000835 ORTHO05D004825 7.0e-41 170.6 118 73.7
Thecc.09G282500 Theobroma cacao HOM05D000835 ORTHO05D004825 7.0e-41 170.6 118 77.1
TWI63G1100 Tripterygium wilfordii HOM05D000835 ORTHO05D004825 9.1e-41 170.2 116 75.0
Gohir.D04G153601 Gossypium hirsutum HOM05D000835 ORTHO05D004825 2.0e-40 169.1 118 72.9
Gohir.D13G227300 Gossypium hirsutum HOM05D000835 ORTHO05D004825 2.0e-40 169.1 118 72.9
Gorai.013G257800 Gossypium raimondii HOM05D000835 ORTHO05D004825 2.0e-40 169.1 118 72.9
Aqoxy2G03921 Aquilegia oxysepala HOM05D000835 ORTHO05D004825 5.9e-40 167.5 116 74.1
MELO3C004440.2 Cucumis melo HOM05D000835 ORTHO05D004825 5.9e-40 167.5 116 75.9
Gorai.012G140400 Gossypium raimondii HOM05D000835 ORTHO05D004825 7.7e-40 167.2 118 72.0
MD15G1160400 Malus domestica HOM05D000835 ORTHO05D004825 7.7e-40 167.2 118 73.7
Potri.006G190600 Populus trichocarpa HOM05D000835 ORTHO05D004825 7.7e-40 167.2 116 71.6
Cfa020900 Carpinus fangiana HOM05D000835 ORTHO05D004825 1.0e-39 166.8 116 76.7
Duzib168G1623 Durio zibethinus HOM05D000835 ORTHO05D004825 1.0e-39 166.8 118 75.4
ClCG02G017230 Citrullus lanatus HOM05D000835 ORTHO05D004825 2.3e-39 165.6 116 75.0
Solyc07g007210.3 Solanum lycopersicum HOM05D000835 ORTHO05D004825 2.3e-39 165.6 116 71.6
Sopen07g003260 Solanum pennellii HOM05D000835 ORTHO05D004825 2.3e-39 165.6 116 71.6
TAR626G0627 Trochodendron aralioides HOM05D000835 ORTHO05D004825 2.3e-39 165.6 116 75.9
Nitab4.5_0001555g0120 Nicotiana tabacum HOM05D000835 ORTHO05D004825 2.9e-39 165.2 116 70.7
Migut.J00851 Erythranthe guttata HOM05D000835 ORTHO05D004825 3.8e-39 164.9 116 71.6
PSO017G2591 Papaver somniferum HOM05D000835 ORTHO05D004825 3.8e-39 164.9 118 74.6
PSO063G0608 Papaver somniferum HOM05D000835 ORTHO05D004825 3.8e-39 164.9 118 74.6
MD02G1013600 Malus domestica HOM05D000835 ORTHO05D004825 6.6e-39 164.1 116 75.0
Nitab4.5_0001021g0120 Nicotiana tabacum HOM05D000835 ORTHO05D004825 6.6e-39 164.1 116 74.1
PGSC0003DMG400030733 Solanum tuberosum HOM05D000835 ORTHO05D004825 6.6e-39 164.1 116 73.3
Ciclev10007342m.g Citrus clementina HOM05D000835 ORTHO05D004825 1.5e-38 162.9 117 76.1
Haze_20239 Corylus avellana HOM05D000835 ORTHO05D004825 1.9e-38 162.5 116 75.0
PGR102G0588 Punica granatum HOM05D000835 ORTHO05D004825 1.9e-38 162.5 116 74.1
Hma1.2p1_0518F.1_g171155 Hydrangea macrophylla HOM05D000835 ORTHO05D004825 3.3e-38 161.8 116 69.0
QL02p091140 Quercus lobata HOM05D000835 ORTHO05D004825 3.3e-38 161.8 116 75.0
Eucgr.C04091 Eucalyptus grandis HOM05D000835 ORTHO05D004825 7.2e-38 160.6 119 74.8
MBI17_g08177_MAGBIO Magnolia biondii HOM05D000835 ORTHO05D004825 7.2e-38 160.6 117 74.4
SalBow3G2439 Salvia bowleyana HOM05D000835 ORTHO05D004825 7.2e-38 160.6 116 72.4
CSS0040726 Camellia sinensis var. sinensis HOM05D000835 ORTHO05D004825 9.5e-38 160.2 116 72.4
QL02p037156 Quercus lobata HOM05D000835 ORTHO05D004825 1.6e-37 159.5 116 73.3
Lsat_1_v5_gn_5_94361 Lactuca sativa HOM05D000835 ORTHO05D004825 2.1e-37 159.1 116 73.3
ECA234G0529 Erigeron canadensis HOM05D000835 ORTHO05D004825 3.6e-37 158.3 118 69.5
Gorai.006G112100 Gossypium raimondii HOM05D000835 ORTHO05D004825 3.6e-37 158.3 118 75.4
Nitab4.5_0012668g0020 Nicotiana tabacum HOM05D000835 ORTHO05D004825 3.6e-37 158.3 116 69.8
FAN10G2975 Fragaria x ananassa HOM05D000835 ORTHO05D004825 4.7e-37 157.9 116 72.4
Cc05_g02310 Coffea canephora HOM05D000835 ORTHO05D004825 1.4e-36 156.4 117 70.9
DCAR_014922 Daucus carota HOM05D000835 ORTHO05D004825 1.8e-36 156.0 116 68.1
BcaB02g08933 Brassica carinata HOM05D000835 ORTHO05D004825 2.3e-36 155.6 86 90.7
Peaxi162Scf00391g00213 Petunia axillaris HOM05D000835 ORTHO05D004825 2.3e-36 155.6 117 65.8
SGA_v2.0_scaffold14G07042 Striga asiatica HOM05D000835 ORTHO05D004825 4.0e-36 154.8 116 70.7
MSTRG.21107 Avicennia marina HOM05D000835 ORTHO05D004825 1.5e-35 152.9 116 67.2
CANSAT01G0568 Cannabis sativa HOM05D000835 ORTHO05D004825 5.7e-35 151.0 116 69.8
FvH4_7g03790 Fragaria vesca HOM05D000835 ORTHO05D004825 7.5e-35 150.6 116 71.6
FAN06G2977 Fragaria x ananassa HOM05D000835 ORTHO05D004825 7.5e-35 150.6 116 71.6
Lj7A447G15 Lonicera japonica HOM05D000835 ORTHO05D004825 7.5e-35 150.6 116 71.6
Lj7A450G51 Lonicera japonica HOM05D000835 ORTHO05D004825 7.5e-35 150.6 116 71.6
FAN03G3509 Fragaria x ananassa HOM05D000835 ORTHO05D004825 9.8e-35 150.2 116 71.6
FAN01G0835 Fragaria x ananassa HOM05D000835 ORTHO05D004825 4.9e-34 147.9 116 70.7
Sabra18G0097700 Salix brachista HOM05D000835 ORTHO05D004825 4.9e-34 147.9 116 69.0
CDE02G4178 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 6.3e-34 147.5 122 64.8
Gohir.A13G222500 Gossypium hirsutum HOM05D000835 ORTHO05D004825 1.1e-33 146.7 118 67.8
RcHm_v2.0_Chr2g0127751 Rosa chinensis HOM05D000835 ORTHO05D004825 1.4e-33 146.4 116 69.8
unitig_747.g21982 Utricularia gibba HOM05D000835 ORTHO05D004825 1.4e-33 146.4 116 67.2
AT5G25230 Arabidopsis thaliana HOM05D000835 ORTHO05D004825 1.8e-33 146.0 116 67.2
Glyma.17G105700 Glycine max HOM05D000835 ORTHO05D004825 3.1e-33 145.2 120 70.0
Prupe.3G036300 Prunus persica HOM05D000835 ORTHO05D004825 4.1e-33 144.8 116 66.4
Glyma.13G165400 Glycine max HOM05D000835 ORTHO05D004825 9.2e-33 143.7 118 71.2
Ca_21619_v3 Cicer arietinum L. HOM05D000835 ORTHO05D004825 1.2e-32 143.3 121 69.4
Lj4g0000935 Lotus japonicus HOM05D000835 ORTHO05D004825 1.2e-32 143.3 120 68.3
TPR.G15808 Trifolium pratense HOM05D000835 ORTHO05D004825 1.2e-32 143.3 123 69.1
Sc23g0003990 Simmondsia chinensis HOM05D000835 ORTHO05D004825 1.6e-32 142.9 125 64.0
Lalb_Chr13g0301221 Lupinus albus HOM05D000835 ORTHO05D004825 2.0e-32 142.5 121 68.6
Hund26921 Selenicereus undatus HOM05D000835 ORTHO05D004825 2.0e-32 142.5 122 69.7
Phvul.003G174100 Phaseolus vulgaris HOM05D000835 ORTHO05D004825 5.9e-32 141.0 118 68.6
HPP92_020496 Vanilla planifolia HOM05D000835 ORTHO05D004825 5.9e-32 141.0 126 61.1
HPP92_020500 Vanilla planifolia HOM05D000835 ORTHO05D004825 5.9e-32 141.0 126 61.1
Medtr4g116430 Medicago truncatula HOM05D000835 ORTHO05D004825 7.8e-32 140.6 119 68.9
Lalb_Chr07g0179481 Lupinus albus HOM05D000835 ORTHO05D004825 2.9e-31 138.7 123 67.5
Psat4g032760 Pisum sativum HOM05D000835 ORTHO05D004825 2.9e-31 138.7 119 68.9
VMungo1215G0342 Vigna mungo HOM05D000835 ORTHO05D004825 6.6e-31 137.5 118 66.9
arahy.Tifrunner.gnm1.ann1.6LFK0V Arachis hypogaea HOM05D000835 ORTHO05D004825 8.6e-31 137.1 128 69.5
arahy.Tifrunner.gnm1.ann1.FP9NT8 Arachis hypogaea HOM05D000835 ORTHO05D004825 2.5e-30 135.6 128 68.0
Dinv37182 Davidia involucrata HOM05D000835 ORTHO05D004825 2.5e-30 135.6 101 67.3
RcHm_v2.0_Chr1g0327101 Rosa chinensis HOM05D000835 ORTHO05D004825 9.5e-30 133.7 116 65.5
Ah.05g177280 Amaranthus hybridus HOM05D000835 ORTHO05D004825 2.1e-29 132.5 123 59.3
EL10Ac1g00674 Beta vulgaris HOM05D000835 ORTHO05D004825 1.0e-28 130.2 124 59.7
ATR0620G065 Amborella trichopoda HOM05D000835 ORTHO05D004825 1.5e-27 126.3 116 54.3
AUR62014521 Chenopodium quinoa HOM05D000835 ORTHO05D004825 5.8e-27 124.4 120 60.0
ECA247G0982 Erigeron canadensis HOM05D000835 ORTHO05D004825 1.9e-25 119.4 118 60.2
SEGI_40149 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 1.2e-24 116.7 131 55.7
SMO116G0243 Selaginella moellendorffii HOM05D000835 ORTHO05D004825 3.9e-23 111.7 119 55.5
Mapoly0008s0107 Marchantia polymorpha HOM05D000835 ORTHO05D004825 1.9e-22 109.4 123 56.9
HanXRQChr10g0315351 Helianthus annuus HOM05D000835 ORTHO05D004825 1.2e-21 106.7 56 87.5
Pp3c6_29320 Physcomitrium patens HOM05D000835 ORTHO05D004825 8.0e-21 104.0 117 53.0
Pp3c27_6340 Physcomitrium patens HOM05D000835 ORTHO05D004825 1.4e-20 103.2 117 52.1
CDE02G3706 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 1.8e-20 102.8 59 86.4
CBR_g2801 Chara braunii HOM05D000835 ORTHO05D004825 7.5e-19 97.4 115 55.7
Os06g0608300 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D004825 1.3e-18 96.7 126 51.6
Zm00001eb386630 Zea mays HOM05D000835 ORTHO05D004825 2.2e-18 95.9 122 53.3
MCO11G411 Micromonas commoda HOM05D000835 ORTHO05D004825 2.4e-17 92.4 112 48.2
AUR62038013 Chenopodium quinoa HOM05D000835 ORTHO05D004825 7.0e-17 90.9 57 77.2
Cre17.g737250 Chlamydomonas reinhardtii HOM05D000835 ORTHO05D004825 7.0e-17 90.9 114 44.7
CDE02G3324 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 1.2e-16 90.1 53 81.1
Actinidia36715 Actinidia chinensis HOM05D000835 ORTHO05D004825 6.0e-16 87.8 74 60.8
Oeu012220.1 Olea europaea HOM05D000835 ORTHO05D004825 3.9e-15 85.1 116 46.6
Aqoxy7G00932 Aquilegia oxysepala HOM05D000835 ORTHO05D004825 8.6e-15 84.0 53 79.2
SEGI_28270 Sequoiadendron giganteum HOM05D000278 ORTHO05D004673 2.5e-14 82.4 107 45.8
GSVIVG01012881001 Vitis vinifera HOM05D000835 ORTHO05D004825 7.3e-14 80.9 116 43.1
Cfa022544 Carpinus fangiana HOM05D000835 ORTHO05D004825 1.8e-12 76.3 113 38.9
SEGI_36116 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 2.0e-11 72.8 45 77.8
CDE02G3825 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 5.8e-11 71.2 82 57.3
SEGI_29204 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 1.3e-10 70.1 45 73.3
SEGI_03682 Sequoiadendron giganteum HOM05D000143 ORTHO05D000072 4.9e-10 68.2 45 71.1
BcaB06g29633 Brassica carinata HOM05D000835 ORTHO05D004825 1.4e-09 66.6 62 59.7
SEGI_13256 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 1.2e-08 63.5 49 63.3
PRCOL_00003930 Prasinoderma coloniale HOM05D000835 ORTHO05D004825 6.6e-07 57.8 116 33.6
SEGI_19022 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 8.6e-07 57.4 34 76.5
Zm00001eb092390 Zea mays HOM05D006287 ORTHO05D000003 8.6e-07 57.4 38 68.4
Zm00001eb193870 Zea mays HOM05D000181 ORTHO05D000003 8.6e-07 57.4 38 68.4
Zm00001eb310610 Zea mays HOM05D000181 ORTHO05D000003 8.6e-07 57.4 38 68.4
SEGI_32344 Sequoiadendron giganteum HOM05D018713 ORTHO05D004825 7.3e-06 54.3 34 73.5
A03p67780 Brassica napus HOM05D043002 ORTHO05D041283 9.5e-06 53.9 63 52.4
BraA01t02690Z Brassica rapa HOM05D043002 ORTHO05D041283 9.5e-06 53.9 63 52.4


User provided reference genes

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