Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1426.4 701 100.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1310.4 647 98.6
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1308.9 647 98.5
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1307.0 647 98.3
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1307.0 647 98.3
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1299.6 647 97.7
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1291.9 649 96.8
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1277.7 646 96.1
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1277.7 645 96.3
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1276.5 649 95.2
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1275.4 647 96.1
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1264.6 649 95.2
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1203.7 648 89.5
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 689 84.3
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 668 86.4
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 654 88.1
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 654 87.8
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 651 87.6
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 652 87.1
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 648 86.4
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 649 88.0
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 654 87.5
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 652 86.3
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 654 87.3
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 650 87.1
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 652 87.3
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 651 86.8
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 647 88.1
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 652 86.3
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 650 86.6
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 650 86.0
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 650 86.5
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 650 86.9
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 649 86.1
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 650 86.8
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 665 85.1
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 649 86.7
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 650 86.8
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 644 86.6
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 649 85.5
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 650 85.5
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 650 85.7
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 645 86.2
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 646 85.8
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 666 83.0
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 650 85.1
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 649 86.0
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 649 85.7
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 650 85.7
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 650 85.2
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1151.7 647 85.2
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1151.7 651 85.1
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 649 85.5
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 646 85.6
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 647 86.1
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 650 84.2
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 661 84.0
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 650 84.3
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 645 85.0
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 640 85.3
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 645 84.7
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 650 84.8
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 650 84.3
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 662 83.2
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 646 84.8
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 650 84.3
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 648 84.6
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 643 84.4
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 647 83.9
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 651 84.8
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 646 85.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 650 84.0
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 642 84.7
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 640 85.5
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 646 84.5
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1135.2 649 84.4
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1134.8 647 83.5
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 630 86.8
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1133.2 622 87.8
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1131.7 647 84.9
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 661 82.8
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 675 81.3
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 646 85.0
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1129.0 623 87.5
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 645 84.3
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 646 83.9
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 651 83.6
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1125.2 646 84.8
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1124.4 646 83.6
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1124.0 651 83.3
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1123.2 646 83.4
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1123.2 646 83.4
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1122.1 651 82.3
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1119.8 596 89.4
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1111.7 649 82.1
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1107.0 707 76.9
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1101.7 591 88.0
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1092.4 648 82.1
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1092.4 618 83.3
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1082.4 625 81.9
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1075.1 589 87.8
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 1.4e-311 1072.4 653 79.5
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 1.9e-311 1072.0 646 81.0
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 8.1e-302 1040.0 602 83.4
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 1.4e-301 1039.3 649 79.5
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 4.9e-299 1030.8 602 82.6
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.1e-298 1029.6 608 81.1
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 2.4e-298 1028.5 540 89.3
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 8.7e-296 1020.0 571 84.2
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.1e-295 1019.6 667 74.8
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.8e-291 1004.6 563 83.7
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.6e-289 997.7 553 84.3
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.4e-285 986.1 615 78.5
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 2.6e-252 875.5 475 86.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 1.6e-228 796.6 513 73.9
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 8.1e-201 704.5 423 82.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 5.1e-187 658.7 403 78.7
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.1e-186 657.5 581 58.2
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 2.2e-150 537.0 267 95.9
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.5e-125 452.6 551 47.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 5.1e-70 270.0 217 61.3
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 9.6e-69 265.8 125 96.0
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.0e-41 176.0 101 80.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.5e-40 171.4 97 82.5
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.5e-37 161.4 146 56.2
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 9.0e-35 152.9 150 56.7
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.8e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 5.3e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 5.5e-08 63.9 32 90.6


User provided reference genes

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