Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.0e-221 773.1 389 100.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 3.9e-144 515.4 615 51.4
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 3.9e-144 515.4 615 51.4
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 3.9e-144 515.4 615 51.4
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 8.6e-144 514.2 615 51.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 1.9e-143 513.1 615 51.2
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 1.9e-143 513.1 615 51.2
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 1.4e-141 506.9 615 51.1
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 5.8e-140 501.5 615 50.7
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 1.7e-139 500.0 615 50.4
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 9.5e-135 484.2 615 48.5
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 3.2e-130 469.2 617 47.5
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 6.0e-129 464.9 596 48.2
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 1.9e-127 459.9 596 47.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 2.8e-126 456.1 593 47.4
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 6.2e-126 454.9 592 47.8
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 1.4e-125 453.8 598 47.0
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 8.9e-125 451.1 596 47.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 8.9e-125 451.1 591 47.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 2.6e-124 449.5 599 46.6
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 3.4e-124 449.1 593 47.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 4.4e-124 448.7 596 46.6
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 1.3e-123 447.2 599 46.1
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 1.7e-123 446.8 593 47.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 6.4e-123 444.9 596 46.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 8.3e-123 444.5 596 45.8
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 8.3e-123 444.5 596 45.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 1.1e-122 444.1 593 46.9
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 1.9e-122 443.4 596 45.8
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.2e-121 440.7 284 83.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 2.1e-121 439.9 596 46.0
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.1e-121 439.9 587 46.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 2.7e-121 439.5 593 46.0
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 4.6e-121 438.7 596 46.1
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 1.7e-120 436.8 596 45.8
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 3.0e-120 436.0 596 45.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 3.0e-120 436.0 596 45.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 3.0e-120 436.0 646 42.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 3.9e-120 435.6 600 45.5
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 5.1e-120 435.3 596 45.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 6.6e-120 434.9 595 46.6
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.6e-120 434.5 587 46.5
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 1.5e-119 433.7 602 45.3
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 1.5e-119 433.7 602 45.3
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 1.9e-119 433.3 587 46.2
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 2.5e-119 433.0 597 45.6
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 2.5e-119 433.0 593 46.0
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 4.3e-119 432.2 597 45.4
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 4.3e-119 432.2 597 45.6
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.3e-119 432.2 595 46.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 1.6e-118 430.3 587 46.3
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.6e-118 430.3 587 46.3
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 2.1e-118 429.9 602 45.2
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 3.6e-118 429.1 596 45.1
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 3.6e-118 429.1 596 45.1
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 3.6e-118 429.1 613 45.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 1.1e-117 427.6 600 45.2
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 2.4e-117 426.4 595 45.5
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 4.0e-117 425.6 595 45.0
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 4.0e-117 425.6 595 45.5
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 5.2e-117 425.2 602 44.7
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 6.8e-117 424.9 592 45.1
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.2e-116 424.1 534 49.3
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 9.9e-116 421.0 283 80.9
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.2e-115 419.9 646 42.6
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 2.2e-115 419.9 590 44.6
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 2.2e-115 419.9 590 44.6
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 2.9e-115 419.5 283 80.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.1e-114 417.5 646 42.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 4.2e-114 415.6 595 45.0
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 1.2e-113 414.1 592 43.9
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-113 414.1 590 43.6
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 4.6e-113 412.1 663 41.6
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 6.0e-113 411.8 616 42.7
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 1.3e-112 410.6 584 45.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 1.3e-112 410.6 593 43.8
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 1.7e-112 410.2 598 43.1
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 2.3e-112 409.8 593 44.4
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 1.5e-111 407.1 584 44.5
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 4.3e-111 405.6 500 48.0
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 5.6e-111 405.2 496 49.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.1e-110 403.3 584 44.3
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.4e-109 400.6 601 44.3
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.5e-108 397.1 580 43.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 2.6e-108 396.4 593 42.5
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.4e-108 396.0 294 76.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 3.4e-108 396.0 588 42.7
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 1.3e-107 394.0 664 38.7
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.9e-107 392.9 461 51.8
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 2.9e-107 392.9 593 42.8
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.1e-106 391.0 593 41.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 3.2e-106 389.4 593 41.8
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 3.9e-104 382.5 283 73.5
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 3.9e-104 382.5 593 41.0
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 9.6e-103 377.9 605 40.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 2.8e-102 376.3 593 42.0
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 5.3e-101 372.1 559 45.1
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 3.8e-99 365.9 608 41.1
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-95 353.2 498 46.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.5e-92 342.4 480 46.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 7.1e-90 335.1 593 38.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.0e-88 331.3 589 36.8
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 2.5e-87 326.6 578 36.9
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 4.1e-85 319.3 288 62.5
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.3e-85 318.9 264 67.4
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.9e-74 283.9 593 32.5
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 4.8e-62 242.7 194 67.0
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.1e-61 240.0 448 38.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 7.7e-60 235.3 135 88.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.0e-59 235.0 225 59.1
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-54 217.6 274 48.2
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 6.8e-48 195.7 400 36.2
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 6.3e-46 189.1 214 56.1
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.2e-44 184.9 331 37.5
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-42 177.2 113 73.5
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.2e-41 174.9 380 33.7
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.0e-40 170.2 140 65.7
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.4e-37 161.4 248 42.3
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 5.9e-36 156.0 441 32.2
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.0e-35 155.2 113 63.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.8e-33 147.1 151 57.6
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.4e-32 144.8 113 62.8
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-27 126.3 95 71.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 9.5e-26 122.1 104 65.4
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 8.0e-25 119.0 89 68.5
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.2e-24 116.3 113 54.0
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.2e-23 115.2 121 57.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 7.5e-23 112.5 89 66.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.9e-22 109.8 112 42.9
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-21 107.8 110 57.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.2e-17 95.1 220 34.5
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.2e-17 95.1 97 55.7
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.7e-17 93.2 106 50.9
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 8.9e-16 89.0 92 56.5
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.7e-14 84.7 60 75.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.2e-14 84.3 98 48.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 6.4e-14 82.8 89 53.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-10 72.0 58 63.8
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.9e-08 62.4 132 37.9
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.0e-07 61.2 86 41.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.7e-06 58.2 91 39.6


User provided reference genes

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