Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1381.3 709 100.0
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1322.4 719 92.1
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1322.4 719 92.1
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1322.4 719 92.1
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1275.0 701 93.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1263.4 617 97.4
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 0.0e+00 1253.8 710 90.1
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1240.3 710 87.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1237.2 709 89.4
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1229.2 712 86.4
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1210.7 709 86.9
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1201.4 709 86.5
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1199.1 709 86.3
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 0.0e+00 1171.0 715 83.4
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 0.0e+00 1152.1 715 82.4
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 0.0e+00 1147.9 686 83.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 0.0e+00 1142.9 712 80.9
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 0.0e+00 1138.3 716 81.3
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 0.0e+00 1089.7 712 76.3
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1087.0 741 73.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.1e-296 1023.1 622 76.7
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.7e-295 1018.5 622 76.2
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 8.0e-295 1016.9 622 76.0
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.3e-293 1011.5 622 75.4
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 5.7e-293 1010.7 622 75.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 4.8e-292 1007.7 622 75.6
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.0e-289 1000.0 619 74.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.0e-289 1000.0 617 75.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.9e-288 995.7 622 74.4
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 4.2e-288 994.6 623 74.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 4.2e-288 994.6 630 75.1
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.2e-288 993.8 622 74.3
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 6.1e-287 990.7 701 68.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.3e-286 988.8 624 74.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 6.8e-286 987.3 622 74.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 4.8e-284 981.1 716 70.8
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.4e-283 979.5 619 73.7
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 7.0e-283 977.2 690 68.7
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 7.0e-283 977.2 622 73.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 3.5e-282 974.9 621 72.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.5e-282 974.9 622 73.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 7.7e-282 973.8 622 73.6
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 3.8e-281 971.5 622 72.8
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 6.6e-281 970.7 623 72.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.6e-281 970.3 619 77.4
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 4.7e-279 964.5 627 72.2
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 6.1e-279 964.1 621 72.0
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 6.1e-279 964.1 627 71.8
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 8.0e-279 963.8 642 70.6
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.4e-278 963.0 704 66.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 6.8e-278 960.7 621 72.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 8.9e-278 960.3 622 72.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 4.4e-277 958.0 621 71.8
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 4.4e-277 958.0 690 66.8
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 9.8e-277 956.8 702 67.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.7e-276 956.1 617 72.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.3e-276 954.1 685 70.1
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 4.1e-275 951.4 622 71.9
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 5.9e-274 947.6 621 71.2
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 5.9e-274 947.6 715 65.9
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 7.8e-274 947.2 617 72.1
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.7e-273 946.0 713 64.2
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.9e-272 942.6 688 67.3
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.0e-270 936.8 621 70.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.2e-269 933.3 708 66.1
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 2.6e-269 932.2 700 65.9
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 7.5e-269 930.6 708 66.0
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.1e-267 926.8 623 71.4
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.1e-267 926.8 623 69.0
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.1e-267 926.8 664 66.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.4e-267 926.4 717 64.0
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 9.2e-267 923.7 670 65.8
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.0e-266 922.5 552 81.2
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.7e-266 922.2 682 67.3
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 3.5e-266 921.8 690 66.2
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 4.6e-266 921.4 622 70.4
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 6.0e-266 921.0 719 64.7
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 6.8e-262 907.5 617 69.9
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.6e-258 896.3 652 66.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.3e-257 893.3 622 68.8
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.1e-255 885.9 622 69.0
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 5.2e-254 881.3 657 65.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.2e-254 881.3 626 68.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 6.8e-254 880.9 705 60.9
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.0e-253 879.4 712 62.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 4.4e-253 878.2 708 62.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 9.2e-251 870.5 621 66.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 8.6e-249 864.0 566 71.0
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.5e-248 863.2 639 64.2
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.5e-248 863.2 621 66.3
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 7.3e-248 860.9 572 71.5
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-247 860.1 621 66.0
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 4.2e-243 845.1 625 64.8
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 4.2e-243 845.1 541 72.6
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 3.0e-241 839.0 690 64.8
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 8.1e-239 830.9 711 59.5
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.4e-238 829.3 623 64.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.0e-238 828.6 610 65.7
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.3e-236 823.5 595 68.6
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.1e-233 811.6 712 59.8
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.6e-233 811.2 765 56.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 4.3e-232 808.5 669 62.8
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.3e-232 807.7 623 63.6
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 9.9e-229 797.3 622 59.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.0e-225 787.3 642 59.3
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 5.1e-225 785.0 628 62.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 8.7e-225 784.3 623 60.5
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.1e-223 777.7 623 62.3
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.5e-219 766.1 623 61.8
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.6e-218 761.9 622 59.3
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.0e-212 744.2 647 55.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.8e-207 725.3 623 59.1
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.4e-206 723.0 661 56.0
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 3.7e-199 699.1 585 59.7
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.5e-195 686.4 620 57.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 4.4e-192 675.6 427 72.8
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 7.4e-192 674.9 536 60.8
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 4.2e-187 659.1 426 72.1
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.1e-186 656.8 426 71.1
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-185 652.9 522 61.7
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.0e-184 650.2 623 54.3
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.7e-181 638.3 621 54.1
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.0e-177 627.9 375 78.7
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.7e-175 619.4 487 63.2
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 3.8e-172 609.4 656 48.0
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.5e-172 608.6 426 66.2
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.6e-170 604.0 431 66.1
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.1e-170 603.6 424 67.2
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.7e-162 575.9 421 62.5
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.9e-161 571.6 421 62.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.9e-159 565.8 714 43.3
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.0e-144 517.3 318 78.0
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 6.6e-140 502.3 635 41.7
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 5.2e-137 492.7 425 56.5
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 4.1e-134 483.0 659 41.0
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 6.0e-133 479.2 424 56.1
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.1e-129 466.8 616 40.3
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.1e-106 389.0 436 48.6
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.4e-89 335.1 198 81.3
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 6.9e-89 332.8 224 70.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 5.1e-84 316.6 194 76.3
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 2.4e-81 307.8 190 75.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.9e-79 300.8 185 75.1
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.1e-76 290.0 171 77.8
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.8e-73 281.6 187 71.1
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.1e-73 280.8 188 70.7
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.5e-70 271.2 157 79.0
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 3.1e-65 254.2 151 81.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.0e-64 251.5 187 64.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.2e-61 242.3 136 78.7
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.7e-58 230.7 171 64.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 7.7e-56 223.0 132 76.5
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.2e-55 221.5 113 95.6
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 9.2e-49 199.5 113 81.4
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.0e-47 193.7 103 83.5
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 5.6e-38 163.7 108 70.4
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 9.5e-38 162.9 79 96.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.6e-37 162.2 83 85.5
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.2e-34 151.8 100 71.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.9e-25 122.1 72 77.8
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 9.2e-25 119.8 76 71.1
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 7.8e-24 116.7 85 64.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 5.1e-23 114.0 153 41.2
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.1e-20 106.3 69 69.6
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.4e-12 79.3 50 66.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.4e-09 68.6 44 72.7
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 5.4e-09 67.4 220 25.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.2e-08 66.2 50 64.0
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 4.6e-08 64.3 221 26.2
Migut.N02237 Erythranthe guttata HOM05D001610 ORTHO05D001585 6.0e-08 63.9 341 24.6
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 1.7e-07 62.4 341 22.0
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 1.5e-06 59.3 221 25.3
AagrBONN_evm.TU.Sc2ySwM_228.1939 Anthoceros agrestis HOM05D004736 ORTHO05D006424 1.9e-06 58.9 56 39.3
Lj1g0009588 Lotus japonicus HOM05D001715 ORTHO05D003849 1.9e-06 58.9 151 30.5
Actinidia29380 Actinidia chinensis HOM05D001715 ORTHO05D003849 2.5e-06 58.5 151 30.5
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.3e-06 58.2 209 23.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.3e-06 57.8 43 65.1
Dinv37405 Davidia involucrata HOM05D001715 ORTHO05D003849 5.6e-06 57.4 155 28.4
Cpa.g.sc10.260 Carica papaya HOM05D001715 ORTHO05D003849 7.3e-06 57.0 151 29.1


User provided reference genes

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