Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 6.5e-99 364.0 175 100.0
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 2.1e-73 279.3 179 78.8
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 2.1e-73 279.3 179 78.8
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 2.1e-73 279.3 177 78.5
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 1.2e-68 263.5 177 76.8
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 7.7e-68 260.8 177 76.3
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.5e-23 113.6 133 48.9
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 5.8e-23 111.7 134 47.8
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 5.8e-23 111.7 136 49.3
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 5.8e-23 111.7 136 49.3
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 5.8e-23 111.7 134 47.8
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 1.7e-22 110.2 221 37.1
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 2.9e-22 109.4 133 50.4
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.7e-22 109.0 266 35.0
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 8.3e-22 107.8 133 50.4
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.4e-21 107.1 132 49.2
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 1.9e-21 106.7 137 47.4
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 2.4e-21 106.3 137 47.4
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 3.2e-21 105.9 139 44.6
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 5.4e-21 105.1 132 48.5
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.1e-21 104.8 135 46.7
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 9.2e-21 104.4 132 49.2
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 9.2e-21 104.4 133 47.4
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.2e-21 104.4 133 47.4
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.2e-21 104.4 133 47.4
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.2e-21 104.4 133 47.4
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.2e-21 104.4 133 47.4
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 9.2e-21 104.4 133 47.4
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 1.2e-20 104.0 133 48.9
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 1.2e-20 104.0 132 47.7
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.6e-20 103.6 132 48.5
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 1.6e-20 103.6 132 47.7
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.6e-20 103.6 137 45.3
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.6e-20 103.6 137 45.3
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 2.1e-20 103.2 137 46.7
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 2.1e-20 103.2 137 46.0
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 2.1e-20 103.2 137 46.7
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 2.7e-20 102.8 137 46.0
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 2.7e-20 102.8 134 47.0
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 3.5e-20 102.4 137 46.0
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.5e-20 102.4 134 44.8
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 4.6e-20 102.1 137 46.0
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 4.6e-20 102.1 133 47.4
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 4.6e-20 102.1 133 47.4
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 4.6e-20 102.1 133 47.4
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 4.6e-20 102.1 132 47.0
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 6.0e-20 101.7 132 47.0
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.0e-20 101.7 134 44.8
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 6.0e-20 101.7 132 47.7
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 7.8e-20 101.3 137 45.3
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 7.8e-20 101.3 132 46.2
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 7.8e-20 101.3 134 44.8
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 7.8e-20 101.3 132 46.2
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 7.8e-20 101.3 132 47.0
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 7.8e-20 101.3 132 46.2
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.0e-19 100.9 137 46.0
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 1.0e-19 100.9 132 46.2
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-19 100.5 131 45.0
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.3e-19 100.5 136 45.6
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 1.3e-19 100.5 137 45.3
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.7e-19 100.1 137 45.3
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 1.7e-19 100.1 137 44.5
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 2.3e-19 99.8 85 58.8
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 2.3e-19 99.8 132 46.2
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 2.3e-19 99.8 132 46.2
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 2.3e-19 99.8 132 46.2
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.9e-19 99.0 243 33.3
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.9e-19 99.0 243 33.3
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 5.1e-19 98.6 138 43.5
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 5.1e-19 98.6 267 31.8
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 5.1e-19 98.6 132 43.9
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 5.1e-19 98.6 132 45.5
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 5.1e-19 98.6 137 44.5
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 5.1e-19 98.6 132 46.2
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 6.6e-19 98.2 132 45.5
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 6.6e-19 98.2 137 45.3
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 8.6e-19 97.8 137 43.8
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 1.1e-18 97.4 132 44.7
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 1.1e-18 97.4 137 42.3
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.5e-18 97.1 137 41.6
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.5e-18 97.1 134 43.3
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.5e-18 97.1 85 54.1
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 1.5e-18 97.1 132 46.2
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 1.5e-18 97.1 138 42.8
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.5e-18 97.1 137 44.5
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.9e-18 96.7 130 43.1
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.9e-18 96.7 132 45.5
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 2.5e-18 96.3 132 44.7
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.3e-18 95.9 132 44.7
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.3e-18 95.9 132 44.7
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.3e-18 95.9 132 44.7
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.3e-18 95.9 132 44.7
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 3.3e-18 95.9 132 44.7
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 3.3e-18 95.9 133 45.9
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 3.3e-18 95.9 137 43.8
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 4.3e-18 95.5 132 44.7
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 4.3e-18 95.5 85 55.3
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 5.6e-18 95.1 132 45.5
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.6e-18 95.1 137 42.3
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 7.3e-18 94.7 133 42.9
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 7.3e-18 94.7 137 43.1
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 9.5e-18 94.4 132 41.7
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 9.5e-18 94.4 132 43.9
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 1.6e-17 93.6 85 55.3
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 1.6e-17 93.6 132 42.4
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.6e-17 93.6 85 55.3
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 2.1e-17 93.2 132 43.2
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 2.8e-17 92.8 137 43.8
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 2.8e-17 92.8 85 55.3
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 3.6e-17 92.4 85 54.1
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 3.6e-17 92.4 132 43.2
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 4.7e-17 92.0 137 43.1
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 4.7e-17 92.0 137 41.6
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 8.1e-17 91.3 137 43.1
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 1.8e-16 90.1 85 50.6
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 1.8e-16 90.1 137 42.3
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 1.8e-16 90.1 137 42.3
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.1e-16 89.4 137 38.7
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 3.1e-16 89.4 128 43.0
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 4.0e-16 89.0 124 45.2
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 5.2e-16 88.6 128 45.3
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 6.8e-16 88.2 84 51.2
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 8.9e-16 87.8 85 48.2
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.6e-15 86.3 71 56.3
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 5.8e-15 85.1 134 42.5
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 8.4e-14 81.3 133 37.6
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 4.1e-13 79.0 132 39.4
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 9.2e-13 77.8 85 48.2
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.1e-11 72.0 102 44.1
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 5.6e-10 68.6 84 41.7
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 9.6e-10 67.8 112 40.2
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 2.4e-08 63.2 73 39.7
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 6.8e-08 61.6 93 43.0
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 2.0e-07 60.1 50 58.0


User provided reference genes

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