Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07770 Brassica carinata HOM05D004445 ORTHO05D005578 6.0e-52 207.2 104 100.0
A09p52090 Brassica napus HOM05D004445 ORTHO05D005578 1.6e-17 92.8 46 97.8
BraA09t40641Z Brassica rapa HOM05D004445 ORTHO05D005578 1.6e-17 92.8 46 97.8
BcaB02g08208 Brassica carinata HOM05D004445 ORTHO05D005578 2.0e-15 85.9 46 95.7
BcaC02g10088 Brassica carinata HOM05D004445 ORTHO05D005578 2.0e-15 85.9 46 95.7
C04p32900 Brassica napus HOM05D004445 ORTHO05D005578 2.0e-15 85.9 46 95.7
BolC4t24853H Brassica oleracea HOM05D004445 ORTHO05D005578 2.0e-15 85.9 46 95.7
A04p02010 Brassica napus HOM05D004445 ORTHO05D005578 2.6e-15 85.5 46 93.5
BraA04t15926Z Brassica rapa HOM05D004445 ORTHO05D005578 2.6e-15 85.5 46 93.5
Sp5g03330 Schrenkiella parvula HOM05D004445 ORTHO05D005578 1.3e-14 83.2 46 93.5
Thhalv10006338m.g Eutrema salsugineum HOM05D004445 ORTHO05D005578 5.0e-14 81.3 46 89.1
Atru.chr3.1946 Acer truncatum HOM05D004445 ORTHO05D005578 6.5e-14 80.9 46 84.8
BcaC08g45011 Brassica carinata HOM05D004445 ORTHO05D005578 6.5e-14 80.9 46 91.3
A07p24840 Brassica napus HOM05D004445 ORTHO05D005578 6.5e-14 80.9 46 91.3
C06p26430 Brassica napus HOM05D004445 ORTHO05D005578 6.5e-14 80.9 46 91.3
BolC6t37806H Brassica oleracea HOM05D004445 ORTHO05D005578 6.5e-14 80.9 46 91.3
BraA07t30128Z Brassica rapa HOM05D004445 ORTHO05D005578 6.5e-14 80.9 46 91.3
CDE02G4113 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 1.9e-13 79.3 46 84.8
CDE06G1144 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 1.9e-13 79.3 46 84.8
Carub.0005s2653 Capsella rubella HOM05D004445 ORTHO05D005578 2.5e-13 79.0 46 87.0
THA.LOC104805002 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 2.5e-13 79.0 46 87.0
Oeu022452.1 Olea europaea HOM05D004445 ORTHO05D005578 4.2e-13 78.2 46 87.0
AL5G41860 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 5.5e-13 77.8 46 87.0
Aa31LG1G25520 Aethionema arabicum HOM05D004445 ORTHO05D005578 7.2e-13 77.4 46 84.8
Aa31LG10G14060 Aethionema arabicum HOM05D004445 ORTHO05D005578 1.2e-12 76.6 46 84.8
THA.LOC104802338 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 1.2e-12 76.6 46 84.8
MD02G1003600 Malus domestica HOM05D004445 ORTHO05D005578 1.6e-12 76.3 46 84.8
MD15G1146900 Malus domestica HOM05D004445 ORTHO05D005578 1.6e-12 76.3 46 84.8
Prupe.7G267700 Prunus persica HOM05D004445 ORTHO05D005578 1.6e-12 76.3 46 84.8
arahy.Tifrunner.gnm1.ann1.H8LWLB Arachis hypogaea HOM05D004445 ORTHO05D005578 2.1e-12 75.9 48 81.2
arahy.Tifrunner.gnm1.ann1.PL7ZZZ Arachis hypogaea HOM05D004445 ORTHO05D005578 2.1e-12 75.9 48 81.2
Nn7g38180 Nelumbo nucifera HOM05D004445 ORTHO05D005578 2.1e-12 75.9 46 82.6
AT3G59810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 2.7e-12 75.5 43 86.0
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.7e-12 75.5 46 82.6
Cpa.g.sc601.1 Carica papaya HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
Cc03_g15060 Coffea canephora HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
DCAR_027508 Daucus carota HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
FvH4_1g00440 Fragaria vesca HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
FAN23G0186 Fragaria x ananassa HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
FAN26G2197 Fragaria x ananassa HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
FAN28G1098 Fragaria x ananassa HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
Nitab4.5_0000812g0140 Nicotiana tabacum HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
Nitab4.5_0006279g0040 Nicotiana tabacum HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
RcHm_v2.0_Chr2g0084951 Rosa chinensis HOM05D004445 ORTHO05D005578 2.7e-12 75.5 46 84.8
AL4G42690 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 82.6
AT2G43810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 82.6
Migut.F00861 Erythranthe guttata HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 89.1
Eucgr.G01590 Eucalyptus grandis HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 84.8
Eucgr.L00030 Eucalyptus grandis HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 84.8
Medtr4g080300 Medicago truncatula HOM05D004445 ORTHO05D005578 3.6e-12 75.1 43 86.0
PGR042G3106 Punica granatum HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 84.8
SalBow3G0834 Salvia bowleyana HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 87.0
SalBow4G2087 Salvia bowleyana HOM05D004445 ORTHO05D005578 3.6e-12 75.1 46 87.0
Sp4g25890 Schrenkiella parvula HOM05D004445 ORTHO05D005578 3.6e-12 75.1 38 94.7
Sc13g0007390 Simmondsia chinensis HOM05D004445 ORTHO05D005578 3.6e-12 75.1 44 81.8
Ah.07g203020 Amaranthus hybridus HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 4.6e-12 74.7 46 82.6
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 4.6e-12 74.7 46 82.6
CSS0046632 Camellia sinensis var. sinensis HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Duzib268G1882 Durio zibethinus HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Eucgr.G01588 Eucalyptus grandis HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Eucgr.G01594 Eucalyptus grandis HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Eucgr.G01595 Eucalyptus grandis HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Eucgr.L00039 Eucalyptus grandis HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Glyma.09G262700 Glycine max HOM05D004445 ORTHO05D005578 4.6e-12 74.7 43 86.0
Glyma.18G229600 Glycine max HOM05D004445 ORTHO05D005578 4.6e-12 74.7 43 86.0
Gohir.A09G213620 Gossypium hirsutum HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Gohir.D09G212900 Gossypium hirsutum HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Gorai.006G232700 Gossypium raimondii HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Peaxi162Scf00003g04837 Petunia axillaris HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
PGSC0003DMG400008371 Solanum tuberosum HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
Thecc.04G161800 Theobroma cacao HOM05D004445 ORTHO05D005578 4.6e-12 74.7 46 84.8
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 6.1e-12 74.3 45 82.2
Eucgr.D00038 Eucalyptus grandis HOM05D004445 ORTHO05D005578 6.1e-12 74.3 46 84.8
Lj3g0027067 Lotus japonicus HOM05D004445 ORTHO05D005578 6.1e-12 74.3 46 84.8
Manes.05G137535 Manihot esculenta HOM05D004445 ORTHO05D005578 6.1e-12 74.3 46 84.8
Phvul.008G068400 Phaseolus vulgaris HOM05D004445 ORTHO05D005578 6.1e-12 74.3 43 86.0
Psat7g164240 Pisum sativum HOM05D004445 ORTHO05D005578 6.1e-12 74.3 46 84.8
Actinidia11436 Actinidia chinensis HOM05D004445 ORTHO05D005578 7.9e-12 73.9 43 86.0
Hma1.2p1_0108F.1_g051900 Hydrangea macrophylla HOM05D004445 ORTHO05D005578 7.9e-12 73.9 43 86.0
Rhsim02G0086200 Rhododendron simsii HOM05D004445 ORTHO05D005578 7.9e-12 73.9 46 80.4
arahy.Tifrunner.gnm1.ann1.I91R84 Arachis hypogaea HOM05D004445 ORTHO05D005578 1.0e-11 73.6 36 97.2
arahy.Tifrunner.gnm1.ann1.Y7N0XK Arachis hypogaea HOM05D004445 ORTHO05D005578 1.0e-11 73.6 36 97.2
CAN.G960.57 Capsicum annuum HOM05D004445 ORTHO05D005578 1.0e-11 73.6 46 82.6
CiPaw.01G199100 Carya illinoinensis HOM05D004445 ORTHO05D005578 1.0e-11 73.6 46 82.6
Haze_11169 Corylus avellana HOM05D004445 ORTHO05D005578 1.0e-11 73.6 46 82.6
CANSAT54G1898 Cannabis sativa HOM05D004445 ORTHO05D005578 1.8e-11 72.8 46 82.6
Ca_03838_v3 Cicer arietinum L. HOM05D004445 ORTHO05D005578 1.8e-11 72.8 46 82.6
QL07p046700 Quercus lobata HOM05D004445 ORTHO05D005578 1.8e-11 72.8 46 80.4
Solyc10g078450.2 Solanum lycopersicum HOM05D004445 ORTHO05D005578 1.8e-11 72.8 46 80.4
Sopen10g029110 Solanum pennellii HOM05D004445 ORTHO05D005578 1.8e-11 72.8 46 80.4
CARHR170150 Cardamine hirsuta HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 80.4
AUR62002431 Chenopodium quinoa HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 80.4
AUR62023757 Chenopodium quinoa HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 80.4
Dinv18304 Davidia involucrata HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 82.6
Gohir.A02G007400 Gossypium hirsutum HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 82.6
Gohir.D02G007200 Gossypium hirsutum HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 82.6
Gorai.005G008600 Gossypium raimondii HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 82.6
Pp3c18_1280 Physcomitrium patens HOM05D004445 ORTHO05D005578 2.3e-11 72.4 46 73.9
AagrBONN_evm.TU.Sc2ySwM_228.4655 Anthoceros agrestis HOM05D004445 ORTHO05D005578 3.0e-11 72.0 35 97.1
Ciclev10023071m.g Citrus clementina HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
ECA238G2251 Erigeron canadensis HOM05D004445 ORTHO05D005578 3.0e-11 72.0 36 94.4
HanXRQChr14g0449021 Helianthus annuus HOM05D004445 ORTHO05D005578 3.0e-11 72.0 38 92.1
Peaxi162Scf00483g00211 Petunia axillaris HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
Potri.008G078400 Populus trichocarpa HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
Potri.010G178700 Populus trichocarpa HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
TAR365G0334 Trochodendron aralioides HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
TAR636G2830 Trochodendron aralioides HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
GSVIVG01038197001 Vitis vinifera HOM05D004445 ORTHO05D005578 3.0e-11 72.0 46 82.6
Aqoxy5G03981 Aquilegia oxysepala HOM05D004445 ORTHO05D005578 3.9e-11 71.6 45 77.8
Cfa008488 Carpinus fangiana HOM05D004445 ORTHO05D005578 3.9e-11 71.6 46 80.4
CiPaw.02G123500 Carya illinoinensis HOM05D004445 ORTHO05D005578 3.9e-11 71.6 46 80.4
COL.COLO4_03308 Corchorus olitorius HOM05D004445 ORTHO05D005578 5.1e-11 71.2 43 83.7
COL.COLO4_25170 Corchorus olitorius HOM05D004445 ORTHO05D005578 5.1e-11 71.2 43 83.7
Manes.12G001100 Manihot esculenta HOM05D004445 ORTHO05D005578 5.1e-11 71.2 46 82.6
HPP92_007009 Vanilla planifolia HOM05D004445 ORTHO05D005578 5.1e-11 71.2 48 77.1
ATR0171G021 Amborella trichopoda HOM05D004445 ORTHO05D005578 6.7e-11 70.9 36 91.7
HanXRQChr12g0372591 Helianthus annuus HOM05D004445 ORTHO05D005578 6.7e-11 70.9 38 89.5
Pp3c22_1090 Physcomitrium patens HOM05D004445 ORTHO05D005578 6.7e-11 70.9 46 73.9
EL10Ac3g06124 Beta vulgaris HOM05D004445 ORTHO05D005578 8.8e-11 70.5 46 80.4
CBR_g23546 Chara braunii HOM05D004445 ORTHO05D005578 8.8e-11 70.5 34 97.1
ClCG11G000770 Citrullus lanatus HOM05D004445 ORTHO05D005578 8.8e-11 70.5 38 89.5
MELO3C022586.2 Cucumis melo HOM05D004445 ORTHO05D005578 8.8e-11 70.5 38 89.5
CsaV3_5G012480 Cucumis sativus L. HOM05D004445 ORTHO05D005578 8.8e-11 70.5 38 89.5
Lalb_Chr08g0242021 Lupinus albus HOM05D004445 ORTHO05D005578 8.8e-11 70.5 35 94.3
Lalb_Chr13g0291081 Lupinus albus HOM05D004445 ORTHO05D005578 8.8e-11 70.5 40 82.5
Mapoly0124s0040 Marchantia polymorpha HOM05D004445 ORTHO05D005578 8.8e-11 70.5 46 80.4
Sed0015212 Sechium edule HOM05D004445 ORTHO05D005578 8.8e-11 70.5 38 89.5
Duzib151G0738 Durio zibethinus HOM05D004445 ORTHO05D005578 1.1e-10 70.1 46 80.4
unitig_699.g19769 Utricularia gibba HOM05D004445 ORTHO05D005578 1.1e-10 70.1 46 80.4
Zm00001eb421160 Zea mays HOM05D004445 ORTHO05D005578 1.1e-10 70.1 46 76.1
Carub.0004s2635 Capsella rubella HOM05D004445 ORTHO05D005578 2.0e-10 69.3 46 78.3
SMO197G0107 Selaginella moellendorffii HOM05D004445 ORTHO05D005578 2.0e-10 69.3 46 76.1
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 2.5e-10 68.9 46 76.1
MCO16G126 Micromonas commoda HOM05D004445 ORTHO05D005578 2.5e-10 68.9 43 79.1
TWI15G0001 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 2.5e-10 68.9 46 76.1
TWI15G1072 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 2.5e-10 68.9 46 76.1
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 4.3e-10 68.2 46 73.9
Os02g0510100 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 4.3e-10 68.2 33 93.9
Os04g0388900 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 4.3e-10 68.2 33 93.9
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 4.3e-10 68.2 46 73.9
TPR.G30476 Trifolium pratense HOM05D004445 ORTHO05D005578 4.3e-10 68.2 32 100.0
TWI60G1208 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 4.3e-10 68.2 32 100.0
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 7.4e-10 67.4 75 52.0
PSO170G5655 Papaver somniferum HOM05D004445 ORTHO05D005578 9.7e-10 67.0 32 96.9
PSO357G0486 Papaver somniferum HOM05D004445 ORTHO05D005578 9.7e-10 67.0 32 96.9
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.7e-09 66.2 46 73.9
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.7e-09 66.2 46 73.9
RcHm_v2.0_Chr7g0189461 Rosa chinensis HOM05D004445 ORTHO05D005578 1.7e-09 66.2 44 77.3
FvH4_4g16190 Fragaria vesca HOM05D004445 ORTHO05D005578 3.7e-09 65.1 46 76.1
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 4.8e-09 64.7 46 71.7
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 6.3e-09 64.3 46 69.6
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 6.3e-09 64.3 46 71.7
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 8.2e-09 63.9 46 69.6
vmacro15702 Vaccinium macrocarpon HOM05D004445 ORTHO05D005578 1.1e-08 63.5 42 73.8
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 1.4e-08 63.2 46 67.4
Rhsim02G0086900 Rhododendron simsii HOM05D004445 ORTHO05D005578 3.1e-08 62.0 40 77.5
Ah.13g073310 Amaranthus hybridus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 41 78.0
Cre03.g151750 Chlamydomonas reinhardtii HOM05D004445 ORTHO05D005578 6.9e-08 60.8 36 75.0
PRCOL_00006325 Prasinoderma coloniale HOM05D004445 ORTHO05D005578 6.9e-08 60.8 36 75.0
Sabra08G0058200 Salix brachista HOM05D004445 ORTHO05D005578 6.9e-08 60.8 43 76.7
Sabra10G0137100 Salix brachista HOM05D004445 ORTHO05D005578 9.1e-08 60.5 40 80.0
BcaC06g32832 Brassica carinata HOM05D004445 ORTHO05D000125 1.2e-07 60.1 33 84.8
BcaC06g32829 Brassica carinata HOM05D000538 ORTHO05D000614 1.5e-07 59.7 56 62.5


User provided reference genes

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