Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07721 Brassica carinata HOM05D003112 ORTHO05D003660 5.5e-124 447.6 216 100.0
BcaC02g09423 Brassica carinata HOM05D003112 ORTHO05D003660 1.5e-57 226.9 236 55.1
C04p42460 Brassica napus HOM05D003112 ORTHO05D003660 1.5e-57 226.9 236 55.1
BolC4t25824H Brassica oleracea HOM05D003112 ORTHO05D003660 1.5e-57 226.9 236 55.1
A08p06810 Brassica napus HOM05D003112 ORTHO05D003660 4.4e-57 225.3 236 54.2
C08p08140 Brassica napus HOM05D003112 ORTHO05D003660 4.4e-57 225.3 236 54.2
BraA08t32699Z Brassica rapa HOM05D003112 ORTHO05D003660 4.4e-57 225.3 236 54.2
Sp7g10990 Schrenkiella parvula HOM05D003112 ORTHO05D003660 4.4e-57 225.3 236 54.7
A04p08700 Brassica napus HOM05D003112 ORTHO05D003660 7.5e-57 224.6 236 54.7
BraA04t16563Z Brassica rapa HOM05D003112 ORTHO05D003660 7.5e-57 224.6 236 54.7
BcaC07g37364 Brassica carinata HOM05D003112 ORTHO05D003660 1.3e-56 223.8 236 53.8
BolC8t47666H Brassica oleracea HOM05D003112 ORTHO05D003660 1.3e-56 223.8 236 53.8
Thhalv10024960m.g Eutrema salsugineum HOM05D003112 ORTHO05D003660 2.2e-56 223.0 236 53.8
BcaB04g17692 Brassica carinata HOM05D003112 ORTHO05D003660 2.9e-56 222.6 236 54.2
AT4G13430 Arabidopsis thaliana HOM05D003112 ORTHO05D003660 8.3e-56 221.1 236 53.4
Carub.0007s2912 Capsella rubella HOM05D003112 ORTHO05D003660 1.1e-55 220.7 236 53.4
CARHR219070 Cardamine hirsuta HOM05D003112 ORTHO05D003660 1.1e-55 220.7 236 53.0
Migut.G00571 Erythranthe guttata HOM05D003112 ORTHO05D003660 1.9e-55 219.9 236 54.7
Aa31LG7G1680 Aethionema arabicum HOM05D003112 ORTHO05D003660 9.2e-55 217.6 236 53.4
Lj6g0010145 Lotus japonicus HOM05D003112 ORTHO05D003660 1.6e-54 216.9 236 55.9
Aqoxy5G00139 Aquilegia oxysepala HOM05D003112 ORTHO05D003660 2.7e-54 216.1 240 53.3
THA.LOC104821631 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 3.5e-54 215.7 236 53.8
SalBow2G1480 Salvia bowleyana HOM05D003112 ORTHO05D003660 4.6e-54 215.3 240 54.2
Glyma.17G256102 Glycine max HOM05D003112 ORTHO05D003660 6.0e-54 214.9 238 55.9
TAR633G1760 Trochodendron aralioides HOM05D003112 ORTHO05D003660 6.0e-54 214.9 236 55.1
Hma1.2p1_0112F.1_g054810 Hydrangea macrophylla HOM05D003112 ORTHO05D003660 7.8e-54 214.5 240 54.6
Sabra10G0042000 Salix brachista HOM05D003112 ORTHO05D003660 1.0e-53 214.2 238 55.9
Cc03_g06410 Coffea canephora HOM05D003112 ORTHO05D003660 1.3e-53 213.8 238 55.9
Duzib151G0757 Durio zibethinus HOM05D003112 ORTHO05D003660 1.3e-53 213.8 237 55.7
Gorai.006G250800 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.3e-53 213.8 238 54.6
Manes.15G046300 Manihot esculenta HOM05D003112 ORTHO05D003660 1.3e-53 213.8 238 55.9
Psat6g107560 Pisum sativum HOM05D003112 ORTHO05D003660 1.3e-53 213.8 237 55.3
VMungo0720G0086 Vigna mungo HOM05D003112 ORTHO05D003660 1.3e-53 213.8 237 55.7
MSTRG.24656 Avicennia marina HOM05D003112 ORTHO05D003660 2.3e-53 213.0 240 52.5
MD16G1227200 Malus domestica HOM05D003112 ORTHO05D003660 2.3e-53 213.0 240 53.3
Medtr1g045750 Medicago truncatula HOM05D003112 ORTHO05D003660 2.3e-53 213.0 237 55.3
Nn3g19795 Nelumbo nucifera HOM05D003112 ORTHO05D003660 3.0e-53 212.6 236 55.1
Os02g0125100 Oryza sativa ssp. japonica HOM05D003112 ORTHO05D003660 3.0e-53 212.6 236 51.7
Solyc03g005730.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 3.0e-53 212.6 236 52.5
Sopen03g001740 Solanum pennellii HOM05D003112 ORTHO05D003660 3.0e-53 212.6 236 52.5
PGSC0003DMG400013459 Solanum tuberosum HOM05D003112 ORTHO05D003660 3.0e-53 212.6 236 52.5
Ca_11883_v3 Cicer arietinum L. HOM05D003112 ORTHO05D003660 3.9e-53 212.2 237 55.3
Gohir.D09G228100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 3.9e-53 212.2 238 54.2
Phvul.007G232000 Phaseolus vulgaris HOM05D003112 ORTHO05D003660 3.9e-53 212.2 238 55.0
Prupe.1G049300 Prunus persica HOM05D003112 ORTHO05D003660 5.1e-53 211.8 236 55.1
COL.COLO4_15976 Corchorus olitorius HOM05D003112 ORTHO05D003660 6.6e-53 211.5 237 54.9
Lalb_Chr11g0067221 Lupinus albus HOM05D003112 ORTHO05D003660 6.6e-53 211.5 236 53.8
RcHm_v2.0_Chr4g0395531 Rosa chinensis HOM05D003112 ORTHO05D003660 6.6e-53 211.5 236 54.7
HPP92_026397 Vanilla planifolia HOM05D003112 ORTHO05D003660 6.6e-53 211.5 240 52.5
Atru.chr4.1904 Acer truncatum HOM05D003112 ORTHO05D003660 8.6e-53 211.1 238 54.2
Ciclev10004776m.g Citrus clementina HOM05D003112 ORTHO05D003660 8.6e-53 211.1 237 55.3
Glyma.14G217300 Glycine max HOM05D003112 ORTHO05D003660 8.6e-53 211.1 236 55.1
CANSAT78G1988 Cannabis sativa HOM05D003112 ORTHO05D003660 1.1e-52 210.7 240 52.9
Potri.010G065100 Populus trichocarpa HOM05D003112 ORTHO05D003660 1.1e-52 210.7 238 55.0
THA.LOC104808742 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.1e-52 210.7 236 51.3
Cpa.g.sc59.7 Carica papaya HOM05D003112 ORTHO05D003660 1.5e-52 210.3 236 54.2
Gohir.D09G059100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.5e-52 210.3 234 54.3
Zm00001eb230780 Zea mays HOM05D003112 ORTHO05D003660 1.5e-52 210.3 236 52.5
TWI73G0266 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 1.9e-52 209.9 236 55.1
CSS0008180 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 2.5e-52 209.5 236 53.8
CDE09G0390 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 2.5e-52 209.5 240 53.3
CsaV3_3G049730 Cucumis sativus L. HOM05D003112 ORTHO05D003660 2.5e-52 209.5 236 50.8
FAN17G0040 Fragaria x ananassa HOM05D003112 ORTHO05D003660 2.5e-52 209.5 240 52.5
Manes.03G158200 Manihot esculenta HOM05D003112 ORTHO05D003660 2.5e-52 209.5 240 52.1
Oeu061871.1 Olea europaea HOM05D003112 ORTHO05D003660 2.5e-52 209.5 252 51.2
arahy.Tifrunner.gnm1.ann1.RMYF3V Arachis hypogaea HOM05D003112 ORTHO05D003660 3.3e-52 209.1 246 52.0
FvH4_4g04720 Fragaria vesca HOM05D003112 ORTHO05D003660 3.3e-52 209.1 240 52.9
Lalb_Chr23g0271781 Lupinus albus HOM05D003112 ORTHO05D003660 3.3e-52 209.1 236 54.2
Thecc.04G265900 Theobroma cacao HOM05D003112 ORTHO05D003660 3.3e-52 209.1 234 53.8
Ah.04g153760 Amaranthus hybridus HOM05D003112 ORTHO05D003660 4.3e-52 208.8 240 53.8
EL10Ac3g06677 Beta vulgaris HOM05D003112 ORTHO05D003660 4.3e-52 208.8 236 53.0
CiPaw.02G106400 Carya illinoinensis HOM05D003112 ORTHO05D003660 7.3e-52 208.0 238 54.6
Gohir.A09G059800 Gossypium hirsutum HOM05D003112 ORTHO05D003660 7.3e-52 208.0 236 54.2
Gorai.006G073400 Gossypium raimondii HOM05D003112 ORTHO05D003660 7.3e-52 208.0 234 53.8
RcHm_v2.0_Chr4g0395521 Rosa chinensis HOM05D003112 ORTHO05D003660 7.3e-52 208.0 236 53.4
Sc19g0005580 Simmondsia chinensis HOM05D003112 ORTHO05D003660 7.3e-52 208.0 236 53.8
GSVIVG01027922001 Vitis vinifera HOM05D003112 ORTHO05D003660 9.5e-52 207.6 234 53.4
CSS0035703 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 1.2e-51 207.2 237 54.4
PSO764G0258 Papaver somniferum HOM05D003112 ORTHO05D003660 1.2e-51 207.2 236 50.8
TPR.G23961 Trifolium pratense HOM05D003112 ORTHO05D003660 1.2e-51 207.2 238 54.6
GSVIVG01029978001 Vitis vinifera HOM05D003112 ORTHO05D003660 1.2e-51 207.2 256 51.6
Dinv27120 Davidia involucrata HOM05D003112 ORTHO05D003660 1.6e-51 206.8 236 54.2
MD13G1222900 Malus domestica HOM05D003112 ORTHO05D003660 1.6e-51 206.8 240 52.1
PGR004G0234 Punica granatum HOM05D003112 ORTHO05D003660 2.1e-51 206.5 238 54.2
Ah.04g163950 Amaranthus hybridus HOM05D003112 ORTHO05D003660 2.8e-51 206.1 235 54.0
DCAR_027353 Daucus carota HOM05D003112 ORTHO05D003660 2.8e-51 206.1 254 50.4
Dinv29798 Davidia involucrata HOM05D003112 ORTHO05D003660 2.8e-51 206.1 238 53.8
PSO832G1505 Papaver somniferum HOM05D003112 ORTHO05D003660 2.8e-51 206.1 236 50.4
CAN.G638.35 Capsicum annuum HOM05D003112 ORTHO05D003660 3.6e-51 205.7 254 48.8
Gohir.D09G059000 Gossypium hirsutum HOM05D003112 ORTHO05D003660 3.6e-51 205.7 234 51.7
ClCG09G012580 Citrullus lanatus HOM05D003112 ORTHO05D003660 6.2e-51 204.9 236 52.1
Zm00001eb208760 Zea mays HOM05D003112 ORTHO05D003660 6.2e-51 204.9 236 52.1
MELO3C003344.2 Cucumis melo HOM05D003112 ORTHO05D003660 8.1e-51 204.5 236 50.4
Solyc09g090900.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 8.1e-51 204.5 236 51.7
AL9U10130 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 1.1e-50 204.1 270 46.7
ECA248G0532 Erigeron canadensis HOM05D003112 ORTHO05D003660 1.1e-50 204.1 236 50.8
Gorai.006G073300 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.1e-50 204.1 238 50.4
Thecc.04G265800 Theobroma cacao HOM05D003112 ORTHO05D003660 1.1e-50 204.1 234 51.7
TWI09G1061 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 1.1e-50 204.1 240 51.2
Rhsim04G0171200 Rhododendron simsii HOM05D003112 ORTHO05D003660 1.4e-50 203.8 250 50.8
vmacro08559 Vaccinium macrocarpon HOM05D003112 ORTHO05D003660 1.4e-50 203.8 189 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2484 Anthoceros agrestis HOM05D003112 ORTHO05D003660 1.8e-50 203.4 238 51.7
AUR62019663 Chenopodium quinoa HOM05D003112 ORTHO05D003660 1.8e-50 203.4 234 53.4
Sabra08G0131800 Salix brachista HOM05D003112 ORTHO05D003660 1.8e-50 203.4 241 51.9
Hund24873 Selenicereus undatus HOM05D003112 ORTHO05D003660 1.8e-50 203.4 244 50.8
Dinv19267 Davidia involucrata HOM05D003112 ORTHO05D003660 3.1e-50 202.6 236 50.0
Gohir.A09G059700 Gossypium hirsutum HOM05D003112 ORTHO05D003660 3.1e-50 202.6 235 51.5
CiPaw.01G177200 Carya illinoinensis HOM05D003112 ORTHO05D003660 4.0e-50 202.2 238 52.1
AUR62013948 Chenopodium quinoa HOM05D003112 ORTHO05D003660 4.0e-50 202.2 235 54.0
Sed0016595 Sechium edule HOM05D003112 ORTHO05D003660 4.0e-50 202.2 236 50.0
Duzib151G1146 Durio zibethinus HOM05D003112 ORTHO05D003660 5.2e-50 201.8 233 52.4
ATR0787G024 Amborella trichopoda HOM05D003112 ORTHO05D003660 6.8e-50 201.4 236 51.7
Pp3c4_11270 Physcomitrium patens HOM05D003112 ORTHO05D003660 1.5e-49 200.3 239 50.2
HanXRQChr14g0434771 Helianthus annuus HOM05D003112 ORTHO05D003660 2.0e-49 199.9 236 50.8
HanXRQChr01g0023041 Helianthus annuus HOM05D003112 ORTHO05D003660 4.4e-49 198.7 236 49.2
Lj3A639T17 Lonicera japonica HOM05D003112 ORTHO05D003660 4.4e-49 198.7 253 50.6
CBR_g53549 Chara braunii HOM05D003112 ORTHO05D003660 5.8e-49 198.4 234 51.3
Atru.chr4.1907 Acer truncatum HOM05D003112 ORTHO05D003660 7.6e-49 198.0 230 53.9
HanXRQChr14g0434761 Helianthus annuus HOM05D003112 ORTHO05D003660 7.6e-49 198.0 236 49.2
Sopen09g033880 Solanum pennellii HOM05D003112 ORTHO05D003660 7.6e-49 198.0 236 50.4
Nitab4.5_0005154g0020 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.3e-48 197.2 160 63.8
SGA_v2.0_scaffold31G12624 Striga asiatica HOM05D003112 ORTHO05D003660 4.9e-48 195.3 229 50.7
TPR.G18564 Trifolium pratense HOM05D003112 ORTHO05D003660 7.1e-47 191.4 232 50.9
Lj5g0009083 Lotus japonicus HOM05D003112 ORTHO05D003660 9.2e-47 191.0 233 51.1
DCAR_024295 Daucus carota HOM05D003112 ORTHO05D003660 1.6e-46 190.3 266 46.2
Glyma.20G199600 Glycine max HOM05D003112 ORTHO05D003660 1.6e-46 190.3 232 50.4
Lj3C639T4 Lonicera japonica HOM05D003112 ORTHO05D003660 3.5e-46 189.1 276 45.3
PGSC0003DMG401001552 Solanum tuberosum HOM05D003112 ORTHO05D003660 4.6e-46 188.7 197 54.3
PGSC0003DMG402001552 Solanum tuberosum HOM05D003112 ORTHO05D003660 4.6e-46 188.7 197 54.3
Mapoly0081s0061 Marchantia polymorpha HOM05D003112 ORTHO05D003660 6.0e-46 188.3 231 48.5
SMO347G0250 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 6.0e-46 188.3 235 48.1
Cfa014789 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.0e-45 186.0 266 46.2
Medtr1g073200 Medicago truncatula HOM05D003112 ORTHO05D003660 3.9e-45 185.7 163 60.1
ECA248G1257 Erigeron canadensis HOM05D003112 ORTHO05D003660 6.6e-45 184.9 226 49.1
Lj3A640T23 Lonicera japonica HOM05D003112 ORTHO05D003660 6.6e-45 184.9 304 43.1
Peaxi162Scf01044g00224 Petunia axillaris HOM05D003112 ORTHO05D003660 1.5e-44 183.7 267 42.7
Cre01.g004500 Chlamydomonas reinhardtii HOM05D003112 ORTHO05D003660 1.9e-44 183.3 236 46.2
arahy.Tifrunner.gnm1.ann1.F7U1GP Arachis hypogaea HOM05D003112 ORTHO05D003660 3.3e-44 182.6 232 48.3
arahy.Tifrunner.gnm1.ann1.K9LPZT Arachis hypogaea HOM05D003112 ORTHO05D003660 5.6e-44 181.8 232 48.3
FAN22G1113 Fragaria x ananassa HOM05D003112 ORTHO05D003660 6.2e-43 178.3 227 50.2
FAN12G3900 Fragaria x ananassa HOM05D003112 ORTHO05D003660 3.1e-42 176.0 242 48.3
Rhsim07G0000200 Rhododendron simsii HOM05D003112 ORTHO05D003660 2.0e-41 173.3 344 37.5
Lsat_1_v5_gn_2_41240 Lactuca sativa HOM05D003112 ORTHO05D003660 3.4e-41 172.6 233 46.8
FAN22G2242 Fragaria x ananassa HOM05D003112 ORTHO05D003660 4.4e-41 172.2 144 62.5
Actinidia14607 Actinidia chinensis HOM05D003112 ORTHO05D003660 3.8e-40 169.1 214 49.1
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 6.4e-40 168.3 230 47.8
SHI00769 Sapria himalayana HOM05D003112 ORTHO05D003660 2.4e-39 166.4 238 46.6
SMO235G0067 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 4.2e-39 165.6 169 53.3
Cfa014790 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.1e-39 164.9 201 51.7
Eucgr.H02913 Eucalyptus grandis HOM05D003112 ORTHO05D003660 7.1e-39 164.9 201 50.7
QL06p021218 Quercus lobata HOM05D003112 ORTHO05D003660 2.1e-38 163.3 187 54.0
CAN.G524.11 Capsicum annuum HOM05D003112 ORTHO05D003660 2.7e-38 162.9 207 46.9
RcHm_v2.0_Chr6g0278291 Rosa chinensis HOM05D003112 ORTHO05D003660 6.6e-37 158.3 195 50.3
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.5e-36 156.4 185 50.3
Haze_11466 Corylus avellana HOM05D003112 ORTHO05D003660 4.3e-36 155.6 258 42.6
COL.COLO4_15975 Corchorus olitorius HOM05D003112 ORTHO05D003660 1.6e-35 153.7 186 50.5
SEGI_32008 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 4.8e-35 152.1 206 47.6
ATR0787G215 Amborella trichopoda HOM05D003112 ORTHO05D003660 6.2e-35 151.8 185 47.6
arahy.Tifrunner.gnm1.ann1.L114HI Arachis hypogaea HOM05D003112 ORTHO05D003660 2.4e-34 149.8 228 46.5
Nn1g02981 Nelumbo nucifera HOM05D003112 ORTHO05D003660 3.1e-34 149.4 185 49.2
Nitab4.5_0000592g0470 Nicotiana tabacum HOM05D003112 ORTHO05D003660 6.9e-34 148.3 218 43.1
SalBow3G3468 Salvia bowleyana HOM05D003112 ORTHO05D003660 9.0e-34 147.9 245 41.2
Nitab4.5_0002210g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.5e-33 147.1 218 45.4
SalBow3G1186 Salvia bowleyana HOM05D003112 ORTHO05D003660 2.6e-33 146.4 259 39.4
Peaxi162Scf00242g01317 Petunia axillaris HOM05D003112 ORTHO05D003660 8.4e-32 141.4 223 44.4
Nitab4.5_0001041g0160 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.1e-31 141.0 218 40.4
Peaxi162Scf01044g00110 Petunia axillaris HOM05D003112 ORTHO05D003660 1.4e-31 140.6 109 64.2
Peaxi162Scf45037g00004 Petunia axillaris HOM05D003112 ORTHO05D003660 1.4e-31 140.6 109 64.2
Lsat_1_v5_gn_1_75540 Lactuca sativa HOM05D003112 ORTHO05D003660 1.6e-30 137.1 174 47.7
unitig_736.g22485 Utricularia gibba HOM05D003112 ORTHO05D003660 2.8e-27 126.3 185 44.9
Nitab4.5_0001041g0170 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.8e-26 123.6 204 38.2
Gohir.A09G227100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.1e-22 110.2 142 49.3
MD13G1222600 Malus domestica HOM05D003112 ORTHO05D003660 4.6e-22 109.0 138 47.8
Peaxi162Scf01044g00008 Petunia axillaris HOM05D003112 ORTHO05D003660 1.3e-21 107.5 142 46.5
Manes.03G158100 Manihot esculenta HOM05D003112 ORTHO05D003660 1.8e-21 107.1 139 52.5
MBI10_g16829_MAGBIO Magnolia biondii HOM05D003112 ORTHO05D003660 3.9e-21 105.9 189 38.6
Potri.008G172500 Populus trichocarpa HOM05D003112 ORTHO05D003660 4.3e-20 102.4 138 50.0
MD13G1222400 Malus domestica HOM05D003112 ORTHO05D003660 8.1e-19 98.2 112 50.9
SMO347G0174 Selaginella moellendorffii HOM05D001061 ORTHO05D006881 2.4e-10 70.1 63 52.4
TAR362G0704 Trochodendron aralioides HOM05D003112 ORTHO05D003660 7.6e-09 65.1 55 60.0
SEGI_14416 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 1.9e-07 60.5 38 73.7
Medtr1g045770 Medicago truncatula HOM05D003112 ORTHO05D003660 9.3e-07 58.2 71 47.9


User provided reference genes

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