Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2825.4 1453 100.0
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2769.6 1453 97.6
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2762.3 1463 96.9
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2761.5 1463 96.9
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2738.0 1463 96.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2664.0 1457 93.3
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2655.2 1457 93.8
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2644.0 1465 93.1
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2643.2 1455 93.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2640.9 1464 93.2
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2638.6 1463 93.1
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2634.8 1459 93.0
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2634.8 1468 92.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2617.8 1461 91.6
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2608.9 1462 91.8
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2575.0 1465 90.5
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2572.3 1459 90.3
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2467.6 1333 96.1
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2353.6 1437 84.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2345.5 1470 82.5
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2201.8 1493 76.2
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2188.7 1489 75.6
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2182.1 1493 75.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2180.2 1493 75.4
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2177.1 1492 75.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2164.0 1495 75.5
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2163.7 1495 75.0
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2159.0 1493 75.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2135.1 1491 73.4
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2134.4 1497 74.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2132.8 1493 73.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2131.7 1493 74.1
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2124.0 1485 73.1
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2123.6 1496 73.5
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2119.4 1486 73.1
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2117.8 1491 73.4
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2114.3 1494 73.2
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2113.6 1495 73.4
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2110.9 1478 73.1
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2109.0 1486 73.4
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2105.5 1486 73.1
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2100.9 1478 73.7
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2099.7 1486 73.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2097.8 1486 72.3
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2096.2 1486 72.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2091.2 1486 72.9
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2088.2 1481 72.7
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2084.7 1485 71.9
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2083.5 1492 72.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1485 72.3
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2077.8 1491 71.8
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2075.4 1485 72.5
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2069.3 1474 71.8
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1486 71.1
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2055.8 1486 71.4
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2055.0 1526 70.4
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2054.6 1486 71.0
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2053.5 1483 71.5
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2050.0 1486 70.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2048.1 1486 70.9
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2038.1 1437 73.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2036.5 1481 70.7
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2036.2 1484 70.8
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2031.5 1481 70.8
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2030.0 1487 70.4
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1488 70.4
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1494 70.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2022.3 1488 70.6
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2018.8 1547 68.7
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2018.4 1483 69.8
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2017.3 1480 69.7
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2016.9 1487 70.4
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2016.5 1527 68.8
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2006.9 1478 70.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2006.9 1487 69.3
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2004.6 1485 69.8
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2003.4 1488 69.4
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1998.8 1491 70.2
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1985.7 1563 67.1
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1983.8 1539 67.1
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1973.4 1492 68.7
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1969.9 1488 68.4
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1968.4 1485 69.1
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1965.7 1470 68.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1956.4 1480 67.9
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1929.1 1482 67.9
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1927.5 1490 67.1
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1924.8 1482 67.6
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1920.2 1491 67.5
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1916.0 1473 67.5
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1882.5 1465 67.0
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1870.1 1567 63.8
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1865.1 1499 65.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1845.1 1304 74.4
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1822.8 1300 73.3
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1819.3 1304 73.2
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1801.9 1469 64.3
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1791.9 1279 72.5
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1790.0 1582 62.4
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1726.1 1479 61.1
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1719.9 1208 73.5
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1716.8 1298 69.6
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1683.3 1387 66.5
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1670.6 1419 62.6
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1636.7 1430 59.5
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1636.3 1435 61.8
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1514.2 1523 54.7
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1509.6 1512 54.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1508.0 988 77.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1382.5 1395 56.3
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1318.1 1083 65.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1312.0 1207 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1265.0 1293 53.7
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1242.6 1356 52.9
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1194.5 1356 51.6
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 4.3e-305 1052.0 1258 50.7
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-291 1007.3 737 73.7
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 4.7e-288 995.3 746 68.9
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.9e-285 985.3 849 60.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.7e-249 865.5 771 61.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 6.1e-243 845.5 882 55.7
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 6.3e-232 808.9 705 61.6
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.2e-227 794.7 903 52.7
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.6e-227 794.3 578 68.7
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.8e-199 701.0 608 60.4
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.1e-199 699.9 470 78.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.9e-189 666.8 597 60.3
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.6e-166 591.7 362 78.5
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.6e-163 581.6 736 46.1
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 6.2e-155 553.1 436 69.7
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.9e-152 544.3 474 65.2
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.5e-135 488.0 543 52.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-114 419.5 748 39.7
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 5.4e-98 364.0 1822 24.4
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.3e-91 340.5 230 77.4
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.5e-87 329.3 1340 27.6
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.9e-87 328.9 444 45.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 5.2e-85 320.9 1612 25.0
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.6e-81 309.3 214 73.4
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-75 289.3 396 46.0
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.3e-72 278.9 225 62.7
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 8.9e-69 266.9 155 77.4
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.0e-68 265.8 238 62.2
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 7.5e-68 263.8 152 78.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.8e-61 242.7 267 52.4
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 5.2e-61 241.1 195 61.0
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 5.1e-48 198.0 1341 23.7
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 6.2e-46 191.0 102 86.3
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.9e-43 181.4 155 61.9
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.9e-40 171.8 336 38.7
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.5e-39 169.1 186 51.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 3.8e-35 155.2 189 50.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 9.3e-34 150.6 130 60.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 3.5e-33 148.7 107 72.0
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 6.7e-32 144.4 218 46.8
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.1e-31 143.7 102 71.6
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.0e-24 120.6 131 49.6
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.8e-24 119.8 101 64.4
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.6e-22 113.2 55 89.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.9e-21 107.8 64 78.1
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.6e-20 104.4 67 70.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.2e-19 102.8 131 48.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-15 90.5 110 52.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 77.4
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 77.4
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.1e-13 80.9 69 58.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 2.1e-09 69.7 35 85.7
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 1.0e-08 67.4 50 64.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 6.3e-06 58.2 135 28.9


User provided reference genes

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