Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 0.0e+00 1229.2 601 100.0
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 0.0e+00 1176.0 617 94.2
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 0.0e+00 1162.9 613 93.8
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 0.0e+00 1117.1 617 90.0
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 7.9e-306 1053.1 625 84.2
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 6.7e-305 1050.0 618 83.3
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 3.7e-303 1044.3 625 83.5
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 2.2e-300 1035.0 618 83.0
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 8.8e-297 1023.1 622 82.0
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 3.7e-271 937.9 621 76.0
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 1.0e-265 919.8 634 70.7
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 3.2e-262 908.3 567 79.5
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 4.6e-237 824.7 630 63.0
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 9.9e-232 807.0 648 61.9
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.4e-230 803.1 650 62.0
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 7.1e-230 800.8 650 61.7
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 9.3e-230 800.4 652 60.7
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 3.5e-229 798.5 652 59.2
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 4.6e-229 798.1 652 59.2
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 4.6e-229 798.1 650 61.8
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 7.8e-229 797.3 642 61.8
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 6.6e-228 794.3 643 61.6
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 4.3e-227 791.6 662 58.9
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 1.1e-225 786.9 671 58.7
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 2.4e-225 785.8 646 61.0
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 2.4e-225 785.8 640 60.0
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 5.3e-225 784.6 671 58.7
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 1.2e-224 783.5 651 59.4
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 1.2e-224 783.5 650 60.3
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 1.5e-224 783.1 649 59.2
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 4.5e-224 781.6 654 58.6
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.7e-223 779.6 649 59.8
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 6.4e-223 777.7 649 59.0
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 1.1e-222 776.9 649 59.8
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.1e-222 776.9 672 57.6
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 1.2e-221 773.5 649 59.6
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 6.0e-221 771.2 649 58.9
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 6.0e-221 771.2 646 59.0
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 1.8e-220 769.6 665 57.7
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 8.7e-220 767.3 651 58.5
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.1e-219 766.9 644 59.8
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 1.1e-219 766.9 629 60.7
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 1.5e-219 766.5 669 58.4
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 1.5e-219 766.5 648 58.2
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 3.3e-219 765.4 664 57.7
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 5.6e-219 764.6 672 56.7
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 1.3e-218 763.5 649 58.2
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 1.3e-218 763.5 633 59.9
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 2.8e-218 762.3 697 56.5
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 2.8e-218 762.3 652 57.1
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 3.6e-218 761.9 634 58.8
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 3.1e-217 758.8 668 57.9
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 4.0e-217 758.4 635 58.9
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 1.7e-215 753.1 670 56.3
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 2.2e-215 752.7 636 58.0
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 3.8e-215 751.9 585 62.7
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 8.4e-215 750.7 629 60.1
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.9e-214 749.6 639 58.7
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 5.5e-214 748.0 633 58.3
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 2.1e-213 746.1 670 55.5
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 1.3e-212 743.4 647 57.0
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 2.3e-212 742.7 754 50.9
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 6.7e-212 741.1 689 54.7
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 1.1e-211 740.3 641 59.0
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 5.6e-211 738.0 652 56.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 1.4e-209 733.4 649 56.9
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.8e-209 733.0 650 56.8
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.0e-208 729.6 668 54.5
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.4e-206 723.4 623 57.9
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 3.2e-206 722.2 633 56.9
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 8.7e-204 714.1 649 55.3
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 1.4e-198 696.8 591 58.5
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 2.5e-195 686.0 656 52.4
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 3.7e-194 682.2 663 53.8
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 5.9e-192 674.9 549 61.2
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.9e-191 672.5 484 65.5
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 3.2e-190 669.1 505 63.4
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 7.9e-189 664.5 669 51.0
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 2.0e-187 659.8 634 53.2
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 5.0e-183 645.2 534 59.2
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 7.9e-181 637.9 654 52.1
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 3.8e-175 619.0 495 62.0
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 1.5e-171 607.1 601 51.4
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 2.4e-169 599.7 419 67.8
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 1.2e-168 597.4 490 60.2
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 1.4e-161 573.9 502 55.8
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 5.0e-159 565.5 668 46.9
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 1.5e-158 563.9 641 49.3
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 4.2e-158 562.4 573 50.1
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 4.5e-152 542.3 485 55.1
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.2e-146 523.5 470 56.8
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 3.7e-146 522.7 686 44.0
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 1.1e-145 521.2 522 51.5
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 7.8e-144 515.0 635 45.4
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.3e-143 514.2 600 45.3
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 3.9e-127 459.5 329 65.0
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 1.9e-126 457.2 419 53.9
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 4.4e-115 419.5 642 39.1
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.2e-96 358.2 289 58.8
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 6.2e-93 345.9 441 44.0
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.0e-79 300.4 348 48.0
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 7.2e-73 279.3 513 35.9
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 2.1e-72 277.7 191 72.8
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 7.7e-67 259.2 204 61.3
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 1.7e-61 241.5 472 35.2
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 1.1e-49 202.2 178 53.9
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.1e-48 198.0 290 43.1
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 1.7e-42 178.3 235 45.5
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 1.6e-35 155.2 268 34.0
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 1.5e-33 148.7 132 53.0
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 1.9e-28 131.7 104 56.7
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-26 125.9 132 49.2
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 7.3e-25 119.8 105 57.1
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 8.0e-24 116.3 140 42.1
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 5.8e-22 110.2 105 53.3
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 5.1e-18 97.1 306 28.8
BcaB01g05124 Brassica carinata HOM05D048180 ORTHO05D039854 6.6e-18 96.7 67 79.1
C03p07520 Brassica napus HOM05D048180 ORTHO05D039854 6.6e-18 96.7 67 79.1
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 9.9e-14 82.8 85 51.8
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 1.4e-12 79.0 145 36.6
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.2e-11 75.9 71 52.1
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 5.1e-10 70.5 79 43.0
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.2e-08 65.9 106 39.6
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 4.4e-06 57.4 62 48.4


User provided reference genes

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