Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 6.5e-76 287.3 148 100.0
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.1e-35 153.7 89 86.5
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.1e-35 153.7 85 94.1
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 2.5e-35 152.5 86 91.9
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 3.3e-35 152.1 86 90.7
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 5.6e-35 151.4 86 88.4
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 7.3e-35 151.0 85 90.6
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 2.1e-34 149.4 86 88.4
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 8.9e-33 144.1 83 88.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 8.9e-33 144.1 83 88.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 3.4e-32 142.1 85 85.9
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 7.5e-32 141.0 86 82.6
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.3e-31 140.2 85 88.2
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 2.2e-31 139.4 79 89.9
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 3.7e-31 138.7 86 80.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.9e-31 138.3 87 80.5
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 9.2e-30 134.0 154 51.3
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 7.8e-29 131.0 156 49.4
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 1.9e-27 126.3 93 65.6
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 2.8e-26 122.5 156 48.1
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 3.6e-26 122.1 154 47.4
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.4e-25 120.2 156 46.8
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.8e-25 119.8 114 54.4
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.8e-25 119.8 89 61.8
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 6.8e-25 117.9 91 64.8
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 8.9e-25 117.5 142 50.0
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.5e-24 116.7 153 45.1
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 2.6e-24 115.9 154 47.4
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 7.5e-24 114.4 92 63.0
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 1.3e-23 113.6 156 42.9
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 1.3e-23 113.6 90 63.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.7e-23 113.2 156 44.2
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 4.9e-23 111.7 90 60.0
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 6.4e-23 111.3 156 44.2
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 8.3e-23 110.9 86 66.3
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 1.1e-22 110.5 95 61.1
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.4e-22 110.2 85 64.7
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.4e-22 110.2 87 63.2
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 3.2e-22 109.0 88 61.4
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 7.0e-22 107.8 87 60.9
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 7.0e-22 107.8 88 61.4
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.6e-21 106.7 82 65.9
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.6e-21 106.7 85 62.4
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 4.6e-21 105.1 154 44.2
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.0e-20 104.0 141 44.7
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 1.3e-20 103.6 83 66.3
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 2.3e-20 102.8 156 42.3
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 2.3e-20 102.8 154 44.2
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 3.0e-20 102.4 86 59.3
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 3.0e-20 102.4 86 64.0
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 3.9e-20 102.1 120 53.3
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 5.1e-20 101.7 154 43.5
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 6.6e-20 101.3 156 41.0
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 6.6e-20 101.3 154 43.5
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.5e-19 100.1 156 42.9
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.5e-19 99.4 154 42.9
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.5e-19 99.4 157 40.8
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 2.5e-19 99.4 89 55.1
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 7.3e-19 97.8 85 58.8
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 2.1e-18 96.3 155 40.6
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 3.6e-18 95.5 156 40.4
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 8.1e-18 94.4 70 65.7
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.4e-17 93.6 156 39.1
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.8e-17 93.2 89 52.8
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 4.0e-17 92.0 154 40.9
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 4.0e-17 92.0 84 56.0
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 6.8e-17 91.3 90 53.3
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 8.9e-17 90.9 156 38.5
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 3.4e-16 89.0 84 56.0
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 5.8e-16 88.2 87 50.6
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 7.5e-16 87.8 153 37.9
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 1.3e-15 87.0 156 38.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.7e-15 86.7 108 50.0
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 3.7e-15 85.5 85 54.1
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 4.9e-15 85.1 78 56.4
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.1e-14 84.0 87 49.4
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 1.1e-14 84.0 53 73.6
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 2.4e-14 82.8 156 39.1
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 7.1e-14 81.3 156 37.2
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 1.6e-13 80.1 94 46.8
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 3.5e-13 79.0 109 47.7
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 6.0e-13 78.2 110 44.5
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.0e-12 77.4 111 41.4
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.3e-12 76.3 91 47.3
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.3e-12 76.3 91 47.3
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 3.9e-12 75.5 89 44.9
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 8.6e-12 74.3 156 35.3
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 1.1e-11 73.9 100 45.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 1.9e-11 73.2 91 45.1
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.1e-10 69.7 132 37.1
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 3.6e-10 68.9 156 35.3
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 3.6e-10 68.9 41 78.0
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 4.7e-10 68.6 102 42.2
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.8e-09 66.6 155 32.9
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 3.1e-09 65.9 91 41.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.1e-09 65.9 106 41.5
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 8.9e-09 64.3 93 39.8
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.4e-08 62.4 94 39.4
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 4.4e-08 62.0 33 87.9
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.1e-06 57.4 89 39.3
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.1e-06 57.4 89 39.3
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 1.9e-06 56.6 92 38.0
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 1.9e-06 56.6 30 83.3
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 5.4e-06 55.1 94 37.2


User provided reference genes

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