Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 693 100.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1290.8 693 95.2
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1290.8 693 95.2
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1290.8 693 95.2
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1283.1 693 94.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1283.1 693 94.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1280.4 693 94.4
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1268.8 693 93.9
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1249.6 693 92.1
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1238.0 693 91.5
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1230.3 693 91.1
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1223.8 693 90.5
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1166.8 696 85.8
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1146.3 697 83.9
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 5.5e-303 1043.9 693 81.0
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-299 1032.3 694 79.7
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.2e-297 1026.2 697 76.2
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 4.5e-297 1024.2 697 76.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 5.9e-297 1023.8 695 76.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 2.3e-296 1021.9 697 76.2
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 2.4e-290 1001.9 696 74.4
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 9.2e-290 1000.0 714 73.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 5.6e-287 990.7 686 74.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 5.6e-287 990.7 695 74.0
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 1.2e-286 989.6 690 73.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 2.8e-286 988.4 686 74.5
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 3.6e-286 988.0 687 74.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 4.7e-286 987.6 694 73.8
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 6.2e-286 987.3 696 74.4
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 8.0e-286 986.9 696 73.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.1e-285 986.5 700 74.0
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 1.8e-285 985.7 697 73.0
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 4.4e-284 981.1 748 69.0
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 9.8e-284 979.9 686 73.5
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 1.3e-283 979.5 696 72.3
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 1.3e-283 979.5 693 73.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 6.4e-283 977.2 697 72.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 8.3e-283 976.9 698 73.1
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.1e-282 976.5 699 72.5
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 1.1e-282 976.5 696 73.3
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 1.1e-282 976.5 696 73.3
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 1.4e-282 976.1 693 73.0
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 2.4e-282 975.3 697 72.5
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 2.4e-282 975.3 696 73.0
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 3.2e-282 974.9 698 72.9
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 3.2e-282 974.9 696 73.3
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 5.4e-282 974.2 697 73.2
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 7.0e-282 973.8 693 72.9
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 1.6e-281 972.6 696 72.8
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 2.7e-281 971.8 696 72.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 4.6e-281 971.1 693 72.3
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 4.6e-281 971.1 696 72.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.0e-281 970.7 697 72.7
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 7.8e-281 970.3 693 72.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 1.7e-280 969.1 696 72.3
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 3.9e-280 968.0 696 71.4
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 8.6e-280 966.8 696 71.0
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 3.3e-279 964.9 696 71.3
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 1.6e-278 962.6 760 67.2
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 2.1e-278 962.2 696 73.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 2.1e-278 962.2 696 70.4
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 2.8e-278 961.8 696 72.1
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 6.8e-277 957.2 696 71.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 6.8e-277 957.2 722 69.0
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 2.0e-276 955.7 696 72.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 3.4e-276 954.9 744 68.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 5.8e-276 954.1 686 71.0
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 1.7e-275 952.6 686 71.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 2.2e-275 952.2 686 70.6
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 3.7e-275 951.4 694 70.9
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 1.4e-274 949.5 697 70.7
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 1.2e-273 946.4 699 71.8
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 1.6e-273 946.0 703 70.0
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 7.8e-273 943.7 685 69.6
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 3.0e-272 941.8 696 69.1
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 5.6e-271 937.6 703 69.6
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 1.6e-270 936.0 703 69.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.4e-269 932.9 774 65.4
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 5.2e-269 931.0 703 69.3
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 5.8e-268 927.5 694 68.0
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 3.2e-266 921.8 686 69.1
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.7e-264 916.0 686 69.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 1.5e-263 912.9 638 71.8
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 4.3e-263 911.4 710 68.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 2.1e-262 909.1 724 67.0
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 4.7e-262 907.9 762 64.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.8e-261 906.0 762 63.9
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 4.4e-260 901.4 787 61.5
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 1.9e-258 896.0 711 65.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 5.4e-258 894.4 693 65.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 5.6e-255 884.4 686 65.9
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 8.7e-248 860.5 699 64.8
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 3.4e-236 822.0 575 73.6
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 8.8e-224 780.8 686 59.8
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 4.3e-223 778.5 701 57.5
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.8e-219 765.4 697 61.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 2.4e-213 746.1 687 55.7
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 2.9e-211 739.2 686 59.9
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 7.2e-210 734.6 686 58.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 4.0e-200 702.2 696 58.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 4.1e-189 665.6 986 44.4
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.2e-177 627.5 446 73.3
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.2e-174 616.7 481 68.2
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 3.2e-173 612.8 475 67.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.5e-172 609.4 578 59.2
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 3.2e-149 533.1 448 64.7
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 8.7e-147 525.0 353 75.9
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.1e-144 518.1 375 73.1
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 3.5e-132 476.5 370 71.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 6.5e-126 455.7 701 39.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.5e-119 434.5 311 71.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 7.7e-111 405.6 701 37.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 7.9e-108 395.6 294 76.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.8e-102 376.7 679 35.9
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 9.4e-93 345.5 244 69.7
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.4e-91 341.7 767 33.5
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.1e-88 330.5 342 50.3
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.8e-83 312.8 454 46.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.3e-78 298.5 218 69.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.0e-75 288.9 178 78.7
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 7.5e-74 282.7 165 82.4
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.2e-69 266.9 197 65.5
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.2e-64 250.8 330 43.6
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.1e-48 197.2 175 54.9
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-41 175.6 97 83.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-35 154.5 101 70.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 5.2e-35 153.7 97 73.2
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-30 137.5 85 76.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-29 134.8 105 67.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-28 131.3 114 62.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.8e-28 131.3 87 71.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.6e-28 131.0 185 48.1
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-27 127.9 105 63.8
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.4e-26 124.4 122 59.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-24 119.4 102 61.8
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-24 119.4 67 80.6
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 5.4e-24 117.1 121 56.2
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-22 112.1 124 52.4
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 8.7e-22 109.8 68 70.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 8.7e-22 109.8 107 57.9
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.3e-21 107.8 113 55.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.3e-21 107.5 114 56.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 9.6e-21 106.3 64 71.9
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.8e-20 104.0 136 49.3
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-19 102.4 61 70.5
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-18 99.4 107 52.3
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-17 95.5 118 46.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.4e-17 93.6 101 48.5
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-16 90.1 60 71.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.0e-15 87.0 108 42.6
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-14 85.9 52 73.1
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-14 85.9 52 73.1
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.5e-08 65.1 33 90.9
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-07 62.8 41 73.2
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.6e-07 62.4 78 46.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.7e-07 61.6 84 35.7
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.9e-07 60.1 34 82.4
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.3e-06 59.3 85 44.7


User provided reference genes

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