Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1442.6 743 100.0
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1340.9 746 90.9
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1329.3 748 90.1
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1322.8 743 91.4
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1318.1 743 91.0
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1313.9 743 90.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 0.0e+00 1253.4 763 85.8
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1248.4 766 83.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1248.4 766 83.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1241.9 709 89.4
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1238.4 766 82.4
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1220.7 756 85.1
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1189.9 615 91.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 0.0e+00 1166.8 759 79.2
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 0.0e+00 1159.8 761 79.5
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 0.0e+00 1158.3 761 78.7
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 0.0e+00 1150.2 764 77.6
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 0.0e+00 1144.0 738 79.9
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.9e-309 1065.4 744 71.4
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 6.8e-307 1057.0 746 71.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 7.1e-288 993.8 617 75.4
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 2.1e-287 992.3 617 75.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.6e-286 986.9 617 74.6
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 2.1e-284 982.2 617 74.4
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.6e-284 981.5 617 74.2
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 4.7e-284 981.1 732 66.4
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.4e-283 979.5 616 73.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 4.4e-282 974.5 630 74.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 4.4e-282 974.5 617 73.3
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.3e-281 973.0 733 65.5
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.4e-281 970.7 618 73.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.4e-281 970.7 618 73.1
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.7e-279 965.3 617 72.3
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.7e-278 962.6 617 72.9
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.0e-278 961.8 616 76.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 3.9e-278 961.4 618 72.0
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.5e-277 958.7 747 65.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 2.1e-276 955.7 617 72.3
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.1e-276 955.7 617 72.3
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.6e-276 954.9 617 72.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 3.6e-276 954.9 617 72.4
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 8.1e-276 953.7 739 66.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.8e-275 952.6 763 62.9
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 9.9e-274 946.8 617 72.0
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.7e-273 946.0 622 70.7
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 4.9e-273 944.5 751 63.6
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 4.9e-273 944.5 754 63.0
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 4.9e-273 944.5 637 69.4
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 8.4e-273 943.7 617 71.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 5.4e-272 941.0 622 70.9
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 2.1e-271 939.1 616 71.6
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.6e-271 937.9 754 62.5
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.7e-270 936.0 616 71.4
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.3e-270 935.6 720 63.8
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 3.0e-270 935.3 679 66.0
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.6e-269 931.0 734 62.7
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.6e-269 931.0 726 65.8
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 7.3e-269 930.6 726 64.7
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.6e-268 929.5 616 70.1
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.1e-268 929.1 688 66.1
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.8e-267 926.0 618 70.2
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 9.9e-266 920.2 786 59.3
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 9.9e-266 920.2 750 62.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.3e-265 919.8 552 81.0
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.9e-264 916.0 616 69.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 5.4e-264 914.4 659 65.4
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 9.3e-264 913.7 707 64.8
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.6e-263 912.9 618 70.9
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.7e-263 912.1 707 64.8
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 6.0e-263 911.0 665 65.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 5.1e-262 907.9 697 64.8
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.3e-260 903.3 684 65.6
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 6.2e-260 901.0 770 60.9
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 8.1e-260 900.6 683 64.6
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 3.1e-259 898.7 617 69.0
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-258 896.7 616 69.2
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 2.6e-258 895.6 727 61.5
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 9.9e-258 893.6 765 60.3
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 4.3e-253 878.2 647 65.2
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.7e-252 875.2 619 67.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 6.2e-252 874.4 617 67.4
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.1e-251 872.1 767 61.9
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.3e-249 866.7 709 61.2
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.8e-249 865.1 713 61.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.1e-248 863.6 620 66.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.1e-248 863.6 695 60.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 5.5e-248 861.3 566 71.0
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 7.9e-247 857.4 616 66.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 5.1e-246 854.7 634 63.6
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 8.7e-246 854.0 615 65.5
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 7.4e-245 850.9 615 65.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 5.9e-242 841.3 673 67.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.0e-241 838.2 592 66.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 5.5e-240 834.7 541 71.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 9.0e-235 817.4 532 71.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.7e-233 813.1 618 64.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.9e-233 812.4 726 57.2
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 5.5e-232 808.1 706 58.1
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.6e-231 805.1 612 60.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 3.9e-230 802.0 605 64.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.4e-229 797.7 755 57.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 7.4e-229 797.7 587 65.8
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 9.7e-229 797.3 764 55.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.2e-224 781.2 618 62.0
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 5.2e-222 775.0 618 62.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 6.3e-220 768.1 633 58.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.6e-218 763.5 618 59.4
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 8.5e-217 757.7 618 61.3
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.0e-214 750.7 613 58.9
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.0e-209 734.2 735 53.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.8e-206 723.4 639 55.1
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.7e-202 709.5 657 55.6
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 7.0e-195 684.9 585 59.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.0e-195 684.9 752 50.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 3.0e-190 669.5 421 74.1
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 4.0e-190 669.1 615 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 8.9e-190 667.9 528 61.0
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 3.4e-181 639.4 557 58.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.9e-180 636.3 517 60.3
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 7.0e-179 631.7 539 59.6
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 9.5e-176 621.3 371 78.4
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-175 620.9 616 52.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 6.8e-174 615.1 422 68.7
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 9.8e-173 611.3 737 47.2
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.0e-169 601.3 427 66.3
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.6e-169 598.2 421 67.0
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 6.8e-166 588.6 648 47.1
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 7.1e-163 578.6 540 55.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.3e-161 573.5 422 62.6
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.5e-160 570.9 422 62.6
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.6e-154 549.3 705 42.6
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.7e-145 518.8 318 78.6
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.3e-136 489.6 628 41.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.4e-134 484.6 419 56.6
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.1e-131 472.2 420 56.0
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 5.1e-129 466.1 651 40.1
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 8.2e-127 458.8 615 39.0
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.5e-108 396.0 435 49.7
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.5e-91 341.7 196 81.1
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.8e-89 334.7 224 70.5
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 8.9e-81 305.8 194 73.7
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.4e-78 298.5 190 73.2
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 8.6e-76 289.3 185 71.9
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.4e-72 276.9 171 74.9
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.4e-70 270.0 188 68.6
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 9.2e-70 269.2 188 67.6
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.6e-69 266.9 157 77.1
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-63 248.8 187 63.6
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 4.6e-61 240.4 151 75.5
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.1e-59 235.7 136 76.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.3e-59 234.2 166 65.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 5.6e-59 233.4 113 98.2
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.5e-53 214.2 127 74.8
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 6.2e-50 203.4 113 85.8
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-44 184.5 103 79.6
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.7e-37 161.4 106 68.9
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-36 159.1 79 91.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 5.6e-35 153.7 83 81.9
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.7e-31 142.1 95 68.4
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 9.0e-25 119.8 82 69.5
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-24 119.0 70 75.7
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 9.9e-24 116.3 85 64.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 4.9e-23 114.0 153 41.2
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.3e-18 99.4 69 69.6
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.6e-13 80.9 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.4e-09 68.6 44 72.7
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.2e-08 66.2 50 64.0
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 7.7e-08 63.5 322 23.3
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.2e-06 57.8 43 65.1
Thecc.09G339300 Theobroma cacao HOM05D001715 ORTHO05D003849 5.5e-06 57.4 151 26.5
unitig_578.g16115 Utricularia gibba HOM05D002356 ORTHO05D003849 7.2e-06 57.0 145 27.6


User provided reference genes

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