Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01642 Brassica carinata HOM05D000773 ORTHO05D000588 3.5e-42 174.5 84 100.0
A09p27760 Brassica napus HOM05D000773 ORTHO05D000588 1.2e-15 86.3 44 90.9
BraA09t38346Z Brassica rapa HOM05D000773 ORTHO05D000588 1.2e-15 86.3 44 90.9
BcaB01g01639 Brassica carinata HOM05D000773 ORTHO05D000588 6.2e-15 84.0 44 88.6
BcaC04g21135 Brassica carinata HOM05D000773 ORTHO05D000588 6.2e-15 84.0 44 88.6
C09p35170 Brassica napus HOM05D000773 ORTHO05D000588 6.2e-15 84.0 44 88.6
BolC9t56363H Brassica oleracea HOM05D000773 ORTHO05D000588 6.2e-15 84.0 44 88.6
Thhalv10028531m.g Eutrema salsugineum HOM05D000773 ORTHO05D000588 6.2e-15 84.0 44 88.6
Sp6g06060 Schrenkiella parvula HOM05D000773 ORTHO05D000588 6.2e-15 84.0 44 88.6
Aa31LG9G10840 Aethionema arabicum HOM05D000773 ORTHO05D000588 5.8e-13 77.4 44 79.5
AT4G11400 Arabidopsis thaliana HOM05D000773 ORTHO05D000588 1.7e-12 75.9 52 69.2
AL6G45830 Arabidopsis lyrata HOM05D000773 ORTHO05D000588 8.4e-12 73.6 59 59.3
Ca_10935_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 1.9e-11 72.4 62 56.5
QL12p032501 Quercus lobata HOM05D000773 ORTHO05D000588 4.1e-11 71.2 57 56.1
CiPaw.12G091700 Carya illinoinensis HOM05D000773 ORTHO05D000588 5.4e-11 70.9 51 60.8
THA.LOC104814640 Tarenaya hassleriana HOM05D000773 ORTHO05D000588 5.4e-11 70.9 56 60.7
GSVIVG01019386001 Vitis vinifera HOM05D000773 ORTHO05D000588 5.4e-11 70.9 43 69.8
CAN.G532.4 Capsicum annuum HOM05D000773 ORTHO05D000588 7.1e-11 70.5 55 61.8
CARHR255180 Cardamine hirsuta HOM05D000773 ORTHO05D000588 2.1e-10 68.9 47 63.8
Haze_08806 Corylus avellana HOM05D000773 ORTHO05D000588 2.1e-10 68.9 57 56.1
Dinv37623 Davidia involucrata HOM05D000773 ORTHO05D000588 3.5e-10 68.2 42 69.0
CiPaw.11G133000 Carya illinoinensis HOM05D000773 ORTHO05D000588 6.0e-10 67.4 57 54.4
Ciclev10019313m.g Citrus clementina HOM05D000773 ORTHO05D000588 6.0e-10 67.4 42 71.4
Nn1g01577 Nelumbo nucifera HOM05D000773 ORTHO05D000588 6.0e-10 67.4 44 70.5
CSS0034988 Camellia sinensis var. sinensis HOM05D000773 ORTHO05D000588 7.8e-10 67.0 51 56.9
Potri.003G129800 Populus trichocarpa HOM05D000773 ORTHO05D000588 7.8e-10 67.0 42 69.0
Sabra01G0076800 Salix brachista HOM05D000773 ORTHO05D000588 7.8e-10 67.0 42 66.7
arahy.Tifrunner.gnm1.ann1.E7132P Arachis hypogaea HOM05D000773 ORTHO05D000588 1.0e-09 66.6 54 55.6
arahy.Tifrunner.gnm1.ann1.XIUN11 Arachis hypogaea HOM05D000773 ORTHO05D000588 1.0e-09 66.6 54 55.6
Cpa.g.sc214.11 Carica papaya HOM05D000773 ORTHO05D000588 1.0e-09 66.6 42 66.7
Hma1.2p1_1123F.1_g259420 Hydrangea macrophylla HOM05D000773 ORTHO05D000588 1.3e-09 66.2 60 53.3
Cfa012207 Carpinus fangiana HOM05D000773 ORTHO05D000588 1.7e-09 65.9 57 54.4
COL.COLO4_34492 Corchorus olitorius HOM05D000773 ORTHO05D000588 2.3e-09 65.5 42 69.0
Oeu019182.1 Olea europaea HOM05D000773 ORTHO05D000588 3.0e-09 65.1 50 58.0
Potri.001G101800 Populus trichocarpa HOM05D000773 ORTHO05D000588 3.0e-09 65.1 58 51.7
Sabra03G0092300 Salix brachista HOM05D000773 ORTHO05D000588 3.0e-09 65.1 42 66.7
MSTRG.13849 Avicennia marina HOM05D000773 ORTHO05D000588 3.9e-09 64.7 54 55.6
Oeu042334.1 Olea europaea HOM05D000773 ORTHO05D000588 3.9e-09 64.7 54 53.7
MD07G1134600 Malus domestica HOM05D000773 ORTHO05D000588 5.1e-09 64.3 45 57.8
Manes.01G060100 Manihot esculenta HOM05D000773 ORTHO05D000588 5.1e-09 64.3 42 64.3
Prupe.2G173100 Prunus persica HOM05D000773 ORTHO05D000588 6.6e-09 63.9 56 48.2
TWI32G0558 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 6.6e-09 63.9 42 64.3
SalBow1G2326 Salvia bowleyana HOM05D000773 ORTHO05D000588 8.7e-09 63.5 42 66.7
AUR62027258 Chenopodium quinoa HOM05D000773 ORTHO05D000588 1.1e-08 63.2 42 66.7
Psat7g031720 Pisum sativum HOM05D000773 ORTHO05D000588 1.1e-08 63.2 51 54.9
Thecc.03G281700 Theobroma cacao HOM05D000773 ORTHO05D000588 1.1e-08 63.2 42 66.7
TAR629G1697 Trochodendron aralioides HOM05D000773 ORTHO05D000588 1.1e-08 63.2 42 64.3
Aqoxy7G00265 Aquilegia oxysepala HOM05D000773 ORTHO05D000588 1.5e-08 62.8 43 65.1
Duzib205G0646 Durio zibethinus HOM05D000773 ORTHO05D000588 1.5e-08 62.8 42 66.7
Lsat_1_v5_gn_6_5381 Lactuca sativa HOM05D000773 ORTHO05D000588 1.5e-08 62.8 41 65.9
Lalb_Chr16g0390141 Lupinus albus HOM05D000773 ORTHO05D000588 1.5e-08 62.8 45 57.8
MD06G1087600 Malus domestica HOM05D000773 ORTHO05D000588 1.5e-08 62.8 42 64.3
Medtr8g098645 Medicago truncatula HOM05D000773 ORTHO05D000588 1.5e-08 62.8 42 64.3
ClCG06G003580 Citrullus lanatus HOM05D000773 ORTHO05D000588 1.9e-08 62.4 56 48.2
Migut.E01076 Erythranthe guttata HOM05D000773 ORTHO05D000588 1.9e-08 62.4 47 61.7
Gohir.A08G183800 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.9e-08 62.4 42 64.3
Gohir.D08G197580 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.9e-08 62.4 42 64.3
Gohir.D08G202300 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.9e-08 62.4 42 64.3
Gorai.004G213500 Gossypium raimondii HOM05D000773 ORTHO05D000588 1.9e-08 62.4 42 64.3
RcHm_v2.0_Chr1g0356691 Rosa chinensis HOM05D000773 ORTHO05D000588 1.9e-08 62.4 41 61.0
RcHm_v2.0_Chr7g0197161 Rosa chinensis HOM05D000773 ORTHO05D000588 1.9e-08 62.4 42 61.9
PGSC0003DMG400000178 Solanum tuberosum HOM05D000773 ORTHO05D000588 1.9e-08 62.4 61 44.3
FAN03G0730 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.5e-08 62.0 52 51.9
Hund11455 Selenicereus undatus HOM05D000773 ORTHO05D000588 2.5e-08 62.0 42 64.3
Solyc01g094820.3 Solanum lycopersicum HOM05D000773 ORTHO05D000588 2.5e-08 62.0 61 44.3
Sopen01g038590 Solanum pennellii HOM05D000773 ORTHO05D000588 2.5e-08 62.0 61 44.3
MD01G1066000 Malus domestica HOM05D000773 ORTHO05D000588 3.3e-08 61.6 42 59.5
CAN.G78.96 Capsicum annuum HOM05D000773 ORTHO05D000588 4.3e-08 61.2 55 45.5
MELO3C016363.2 Cucumis melo HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 64.3
CsaV3_4G005870 Cucumis sativus L. HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 64.3
Dinv38926 Davidia involucrata HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 64.3
FAN01G2141 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 57.1
FAN06G1348 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 57.1
FAN06G3706 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 57.1
FAN10G1151 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 57.1
FAN10G2616 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.3e-08 61.2 42 57.1
HanXRQChr13g0394511 Helianthus annuus HOM05D000773 ORTHO05D000588 4.3e-08 61.2 64 45.3
TAR636G0722 Trochodendron aralioides HOM05D000773 ORTHO05D000588 4.3e-08 61.2 43 60.5
VMungo0251G2594 Vigna mungo HOM05D000773 ORTHO05D000588 4.3e-08 61.2 57 47.4
FvH4_5g02760 Fragaria vesca HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 59.5
FvH4_5g02771 Fragaria vesca HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 59.5
FvH4_7g14740 Fragaria vesca HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 57.1
FAN04G2600 Fragaria x ananassa HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 59.5
FAN08G0383 Fragaria x ananassa HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 59.5
FAN13G0309 Fragaria x ananassa HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 59.5
FAN18G3384 Fragaria x ananassa HOM05D000773 ORTHO05D000588 5.6e-08 60.8 42 59.5
Actinidia14576 Actinidia chinensis HOM05D000773 ORTHO05D000588 7.3e-08 60.5 42 64.3
MELO3C021200.2 Cucumis melo HOM05D000773 ORTHO05D000588 7.3e-08 60.5 56 46.4
FAN08G0459 Fragaria x ananassa HOM05D000773 ORTHO05D000588 7.3e-08 60.5 42 57.1
Medtr8g098605 Medicago truncatula HOM05D000773 ORTHO05D000588 7.3e-08 60.5 42 61.9
Prupe.5G103500 Prunus persica HOM05D000773 ORTHO05D000588 7.3e-08 60.5 55 50.9
AUR62010710 Chenopodium quinoa HOM05D000773 ORTHO05D000588 9.6e-08 60.1 42 61.9
ClCG07G008230 Citrullus lanatus HOM05D000773 ORTHO05D000588 9.6e-08 60.1 55 49.1
Eucgr.E00117 Eucalyptus grandis HOM05D000773 ORTHO05D000588 9.6e-08 60.1 43 58.1
Sc22g0005520 Simmondsia chinensis HOM05D000773 ORTHO05D000588 9.6e-08 60.1 72 44.4
SGA_v2.0_scaffold144G35910 Striga asiatica HOM05D000773 ORTHO05D000588 9.6e-08 60.1 42 59.5
Migut.B01773 Erythranthe guttata HOM05D000773 ORTHO05D000588 1.2e-07 59.7 59 44.1
Lj2C182T8 Lonicera japonica HOM05D000773 ORTHO05D000588 1.2e-07 59.7 41 63.4
PGR031G2945 Punica granatum HOM05D000773 ORTHO05D000588 1.2e-07 59.7 43 67.4
Ciclev10019137m.g Citrus clementina HOM05D000773 ORTHO05D000588 1.6e-07 59.3 45 55.6
Cc08_g14950 Coffea canephora HOM05D000773 ORTHO05D000588 1.6e-07 59.3 42 61.9
Glyma.05G209500 Glycine max HOM05D000773 ORTHO05D000588 1.6e-07 59.3 57 47.4
Medtr1g073590 Medicago truncatula HOM05D000773 ORTHO05D000588 1.6e-07 59.3 57 47.4
Peaxi162Scf00074g02029 Petunia axillaris HOM05D000773 ORTHO05D000588 1.6e-07 59.3 50 54.0
ATR0680G269 Amborella trichopoda HOM05D000773 ORTHO05D000588 2.1e-07 58.9 47 57.4
MSTRG.17282 Avicennia marina HOM05D000773 ORTHO05D000588 2.1e-07 58.9 59 44.1
DCAR_000625 Daucus carota HOM05D000773 ORTHO05D000588 2.1e-07 58.9 59 49.2
Medtr1g073530 Medicago truncatula HOM05D000773 ORTHO05D000588 2.1e-07 58.9 42 57.1
PSO478G3420 Papaver somniferum HOM05D000773 ORTHO05D000588 2.1e-07 58.9 42 57.1
PSO782G2181 Papaver somniferum HOM05D000773 ORTHO05D000588 2.1e-07 58.9 42 57.1
Solyc08g081290.4 Solanum lycopersicum HOM05D000773 ORTHO05D000588 2.1e-07 58.9 48 54.2
Sopen08g029600 Solanum pennellii HOM05D000773 ORTHO05D000588 2.1e-07 58.9 48 54.2
CAN.G399.6 Capsicum annuum HOM05D000773 ORTHO05D000588 2.8e-07 58.5 60 41.7
Haze_15529 Corylus avellana HOM05D000773 ORTHO05D000588 2.8e-07 58.5 43 53.5
CsaV3_6G000670 Cucumis sativus L. HOM05D000773 ORTHO05D000588 2.8e-07 58.5 54 48.1
HanXRQChr06g0170201 Helianthus annuus HOM05D000773 ORTHO05D000588 2.8e-07 58.5 43 58.1
Phvul.002G291300 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 2.8e-07 58.5 51 49.0
Sed0007350 Sechium edule HOM05D000773 ORTHO05D000588 2.8e-07 58.5 43 51.2
Atru.chr9.2159 Acer truncatum HOM05D000773 ORTHO05D000588 3.6e-07 58.2 35 65.7
Lj7A510G35 Lonicera japonica HOM05D000773 ORTHO05D000588 3.6e-07 58.2 60 48.3
Nitab4.5_0000386g0010 Nicotiana tabacum HOM05D000773 ORTHO05D000588 3.6e-07 58.2 51 45.1
Nitab4.5_0004114g0010 Nicotiana tabacum HOM05D000773 ORTHO05D000588 3.6e-07 58.2 50 54.0
Rhsim02G0233300 Rhododendron simsii HOM05D000773 ORTHO05D000588 3.6e-07 58.2 42 59.5
RhsimUnG0160200 Rhododendron simsii HOM05D000773 ORTHO05D000588 3.6e-07 58.2 42 59.5
Sed0009983 Sechium edule HOM05D000773 ORTHO05D000588 3.6e-07 58.2 41 63.4
VMungo0331G0277 Vigna mungo HOM05D000773 ORTHO05D000588 3.6e-07 58.2 51 47.1
Ah.12g051760 Amaranthus hybridus HOM05D000773 ORTHO05D000588 4.7e-07 57.8 43 60.5
Medtr1g073380 Medicago truncatula HOM05D000773 ORTHO05D000588 4.7e-07 57.8 42 57.1
Zm00001eb418330 Zea mays HOM05D000773 ORTHO05D000588 4.7e-07 57.8 59 44.1
CsaV3_3G008820 Cucumis sativus L. HOM05D000773 ORTHO05D000588 6.2e-07 57.4 43 51.2
Dinv32496 Davidia involucrata HOM05D000773 ORTHO05D000588 6.2e-07 57.4 41 58.5
MBI17_g33053_MAGBIO Magnolia biondii HOM05D000773 ORTHO05D000588 6.2e-07 57.4 41 56.1
Medtr8g098635 Medicago truncatula HOM05D000773 ORTHO05D000588 6.2e-07 57.4 42 57.1
Nitab4.5_0001522g0090 Nicotiana tabacum HOM05D000773 ORTHO05D000588 6.2e-07 57.4 50 52.0
HPP92_022589 Vanilla planifolia HOM05D000773 ORTHO05D000588 6.2e-07 57.4 51 47.1
VMungo1383G0617 Vigna mungo HOM05D000773 ORTHO05D000588 6.2e-07 57.4 51 47.1
MD14G1108400 Malus domestica HOM05D000773 ORTHO05D000588 8.1e-07 57.0 48 50.0
Nitab4.5_0000583g0230 Nicotiana tabacum HOM05D000773 ORTHO05D000588 8.1e-07 57.0 60 41.7
Oeu052959.2 Olea europaea HOM05D000773 ORTHO05D000588 8.1e-07 57.0 58 43.1
TPR.G12772 Trifolium pratense HOM05D000773 ORTHO05D000588 8.1e-07 57.0 42 59.5
Duzib068G0607 Durio zibethinus HOM05D000773 ORTHO05D000588 1.1e-06 56.6 40 60.0
Oeu013786.1 Olea europaea HOM05D000773 ORTHO05D000588 1.1e-06 56.6 56 42.9
ClCG05G001430 Citrullus lanatus HOM05D000773 ORTHO05D000588 1.4e-06 56.2 45 48.9
DCAR_008615 Daucus carota HOM05D000773 ORTHO05D000588 1.4e-06 56.2 55 41.8
Dinv43837 Davidia involucrata HOM05D000773 ORTHO05D000588 1.4e-06 56.2 42 54.8
Nitab4.5_0002811g0050 Nicotiana tabacum HOM05D000773 ORTHO05D000588 1.4e-06 56.2 51 45.1
PSO384G3317 Papaver somniferum HOM05D000773 ORTHO05D000588 1.4e-06 56.2 47 53.2
Phvul.010G100300 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 1.4e-06 56.2 51 45.1
Carub.0006s3033 Capsella rubella HOM05D000773 ORTHO05D000588 1.8e-06 55.8 50 52.0
CiPaw.01G063400 Carya illinoinensis HOM05D000773 ORTHO05D000588 1.8e-06 55.8 47 46.8
ECA233G4660 Erigeron canadensis HOM05D000773 ORTHO05D000588 1.8e-06 55.8 41 56.1
Glyma.07G069150 Glycine max HOM05D000773 ORTHO05D000588 1.8e-06 55.8 51 47.1
HanXRQChr04g0121231 Helianthus annuus HOM05D000773 ORTHO05D000588 1.8e-06 55.8 45 48.9
PGR042G3278 Punica granatum HOM05D000773 ORTHO05D000588 1.8e-06 55.8 43 58.1
AUR62004381 Chenopodium quinoa HOM05D000773 ORTHO05D000588 2.4e-06 55.5 42 50.0
Cc02_g38230 Coffea canephora HOM05D000773 ORTHO05D000588 2.4e-06 55.5 60 41.7
COL.COLO4_12732 Corchorus olitorius HOM05D000773 ORTHO05D000588 2.4e-06 55.5 45 48.9
QL04p054019 Quercus lobata HOM05D000773 ORTHO05D000588 2.4e-06 55.5 42 50.0
Lj2P1076T7 Lonicera japonica HOM05D000773 ORTHO05D000588 3.1e-06 55.1 52 48.1
Manes.05G032600 Manihot esculenta HOM05D000773 ORTHO05D000588 3.1e-06 55.1 44 52.3
Phvul.008G060800 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 3.1e-06 55.1 51 43.1
Sc26g0000860 Simmondsia chinensis HOM05D000773 ORTHO05D000588 3.1e-06 55.1 42 50.0
PGSC0003DMG400019394 Solanum tuberosum HOM05D000773 ORTHO05D000588 3.1e-06 55.1 50 46.0
Actinidia18414 Actinidia chinensis HOM05D000773 ORTHO05D000588 4.0e-06 54.7 43 53.5
CiPaw.02G032600 Carya illinoinensis HOM05D000773 ORTHO05D000588 4.0e-06 54.7 48 43.8
AUR62022587 Chenopodium quinoa HOM05D000773 ORTHO05D000588 4.0e-06 54.7 42 47.6
DCAR_004621 Daucus carota HOM05D000773 ORTHO05D000588 4.0e-06 54.7 42 59.5
Medtr8g028905 Medicago truncatula HOM05D000773 ORTHO05D000588 4.0e-06 54.7 45 48.9
Os04g0166400 Oryza sativa ssp. japonica HOM05D000773 ORTHO05D000588 4.0e-06 54.7 43 48.8
PSO339G1170 Papaver somniferum HOM05D000773 ORTHO05D000588 4.0e-06 54.7 47 48.9
Hund16657 Selenicereus undatus HOM05D000773 ORTHO05D000588 4.0e-06 54.7 42 52.4
Glyma.08G016200 Glycine max HOM05D000773 ORTHO05D000588 5.2e-06 54.3 57 45.6
SHI13424 Sapria himalayana HOM05D000773 ORTHO05D000588 5.2e-06 54.3 64 40.6
Sopen10g005980 Solanum pennellii HOM05D000773 ORTHO05D000588 5.2e-06 54.3 50 44.0
GSVIVG01027004001 Vitis vinifera HOM05D000773 ORTHO05D000588 5.2e-06 54.3 43 48.8
EL10Ac5g12799 Beta vulgaris HOM05D000773 ORTHO05D000588 6.9e-06 53.9 42 54.8
CANSAT56G3208 Cannabis sativa HOM05D000773 ORTHO05D000588 6.9e-06 53.9 55 41.8
MELO3C006099.2 Cucumis melo HOM05D000773 ORTHO05D000588 6.9e-06 53.9 43 46.5
Thecc.01G357000 Theobroma cacao HOM05D000773 ORTHO05D000588 6.9e-06 53.9 43 46.5
ATR0618G006 Amborella trichopoda HOM05D000773 ORTHO05D000588 9.0e-06 53.5 50 48.0
Cpa.g.sc1258.5 Carica papaya HOM05D000773 ORTHO05D000588 9.0e-06 53.5 42 50.0
HanXRQChr13g0426641 Helianthus annuus HOM05D000773 ORTHO05D000588 9.0e-06 53.5 51 43.1
PGSC0003DMG400021657 Solanum tuberosum HOM05D000773 ORTHO05D000588 9.0e-06 53.5 60 40.0
vmacro02994 Vaccinium macrocarpon HOM05D000773 ORTHO05D000588 9.0e-06 53.5 52 46.2
vmacro06937 Vaccinium macrocarpon HOM05D000773 ORTHO05D000588 9.0e-06 53.5 52 46.2


User provided reference genes

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