Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01641 Brassica carinata HOM05D000773 ORTHO05D000588 8.6e-87 323.6 155 100.0
BcaB01g01639 Brassica carinata HOM05D000773 ORTHO05D000588 5.8e-67 257.7 147 86.4
A09p27760 Brassica napus HOM05D000773 ORTHO05D000588 1.3e-58 229.9 152 76.3
BcaC04g21135 Brassica carinata HOM05D000773 ORTHO05D000588 1.4e-57 226.5 152 76.3
C09p35170 Brassica napus HOM05D000773 ORTHO05D000588 1.4e-57 226.5 152 76.3
BolC9t56363H Brassica oleracea HOM05D000773 ORTHO05D000588 5.4e-57 224.6 152 74.3
BraA09t38346Z Brassica rapa HOM05D000773 ORTHO05D000588 5.4e-57 224.6 155 74.8
Thhalv10028531m.g Eutrema salsugineum HOM05D000773 ORTHO05D000588 1.4e-52 209.9 156 71.2
Sp6g06060 Schrenkiella parvula HOM05D000773 ORTHO05D000588 4.9e-50 201.4 158 68.4
AL6G45830 Arabidopsis lyrata HOM05D000773 ORTHO05D000588 2.7e-48 195.7 156 64.7
AT4G11400 Arabidopsis thaliana HOM05D000773 ORTHO05D000588 3.2e-41 172.2 159 57.2
Aa31LG9G10840 Aethionema arabicum HOM05D000773 ORTHO05D000588 6.0e-32 141.4 155 52.9
Carub.0006s3033 Capsella rubella HOM05D000773 ORTHO05D000588 1.1e-28 130.6 162 51.2
THA.LOC104814640 Tarenaya hassleriana HOM05D000773 ORTHO05D000588 3.7e-21 105.5 165 43.6
COL.COLO4_34492 Corchorus olitorius HOM05D000773 ORTHO05D000588 5.1e-15 85.1 99 50.5
Duzib205G0646 Durio zibethinus HOM05D000773 ORTHO05D000588 1.3e-13 80.5 130 42.3
CARHR255180 Cardamine hirsuta HOM05D000773 ORTHO05D000588 2.2e-13 79.7 138 39.9
Haze_08806 Corylus avellana HOM05D000773 ORTHO05D000588 6.3e-13 78.2 105 42.9
Ciclev10019313m.g Citrus clementina HOM05D000773 ORTHO05D000588 8.2e-13 77.8 104 44.2
Duzib068G0607 Durio zibethinus HOM05D000773 ORTHO05D000588 8.2e-13 77.8 82 50.0
Thecc.03G281700 Theobroma cacao HOM05D000773 ORTHO05D000588 2.4e-12 76.3 99 44.4
GSVIVG01027004001 Vitis vinifera HOM05D000773 ORTHO05D000588 2.4e-12 76.3 94 46.8
MD14G1108400 Malus domestica HOM05D000773 ORTHO05D000588 4.1e-12 75.5 141 34.0
QL12p032501 Quercus lobata HOM05D000773 ORTHO05D000588 5.3e-12 75.1 126 38.1
Cfa012207 Carpinus fangiana HOM05D000773 ORTHO05D000588 6.9e-12 74.7 105 40.0
MD06G1087600 Malus domestica HOM05D000773 ORTHO05D000588 9.0e-12 74.3 142 36.6
Prupe.5G103500 Prunus persica HOM05D000773 ORTHO05D000588 1.2e-11 73.9 134 35.1
CSS0034988 Camellia sinensis var. sinensis HOM05D000773 ORTHO05D000588 1.5e-11 73.6 83 47.0
Prupe.2G173100 Prunus persica HOM05D000773 ORTHO05D000588 7.7e-11 71.2 94 40.4
CiPaw.11G133000 Carya illinoinensis HOM05D000773 ORTHO05D000588 1.0e-10 70.9 145 33.8
Dinv38926 Davidia involucrata HOM05D000773 ORTHO05D000588 1.7e-10 70.1 128 35.9
MD07G1134600 Malus domestica HOM05D000773 ORTHO05D000588 2.2e-10 69.7 95 38.9
Potri.001G101800 Populus trichocarpa HOM05D000773 ORTHO05D000588 2.2e-10 69.7 104 40.4
AUR62022587 Chenopodium quinoa HOM05D000773 ORTHO05D000588 2.9e-10 69.3 110 37.3
CiPaw.02G032600 Carya illinoinensis HOM05D000773 ORTHO05D000588 3.8e-10 68.9 96 39.6
Dinv43837 Davidia involucrata HOM05D000773 ORTHO05D000588 5.0e-10 68.6 130 34.6
MD01G1066000 Malus domestica HOM05D000773 ORTHO05D000588 6.5e-10 68.2 87 41.4
RhsimUnG0160200 Rhododendron simsii HOM05D000773 ORTHO05D000588 6.5e-10 68.2 128 34.4
Haze_15529 Corylus avellana HOM05D000773 ORTHO05D000588 8.5e-10 67.8 124 35.5
TWI32G0558 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 1.1e-09 67.4 113 38.1
Potri.003G129800 Populus trichocarpa HOM05D000773 ORTHO05D000588 1.4e-09 67.0 158 31.0
Sabra14G0062900 Salix brachista HOM05D000773 ORTHO05D000588 1.4e-09 67.0 111 36.0
Sabra02G0128100 Salix brachista HOM05D000773 ORTHO05D000588 2.5e-09 66.2 122 32.8
CAN.G265.1 Capsicum annuum HOM05D000773 ORTHO05D000588 4.2e-09 65.5 106 38.7
Cc08_g14950 Coffea canephora HOM05D000773 ORTHO05D000588 4.2e-09 65.5 99 39.4
Nitab4.5_0000386g0010 Nicotiana tabacum HOM05D000773 ORTHO05D000588 4.2e-09 65.5 105 38.1
SalBow1G2326 Salvia bowleyana HOM05D000773 ORTHO05D000588 5.5e-09 65.1 141 34.0
Potri.014G086700 Populus trichocarpa HOM05D000773 ORTHO05D000588 7.2e-09 64.7 124 31.5
Nitab4.5_0002811g0050 Nicotiana tabacum HOM05D000773 ORTHO05D000588 9.4e-09 64.3 131 35.9
FAN01G2141 Fragaria x ananassa HOM05D000773 ORTHO05D000588 1.2e-08 63.9 81 43.2
FvH4_7g14740 Fragaria vesca HOM05D000773 ORTHO05D000588 1.6e-08 63.5 81 42.0
Sed0009983 Sechium edule HOM05D000773 ORTHO05D000588 1.6e-08 63.5 118 33.9
CiPaw.12G091700 Carya illinoinensis HOM05D000773 ORTHO05D000588 2.1e-08 63.2 104 39.4
Thecc.01G357000 Theobroma cacao HOM05D000773 ORTHO05D000588 2.1e-08 63.2 112 34.8
Nitab4.5_0006018g0020 Nicotiana tabacum HOM05D000773 ORTHO05D000588 2.7e-08 62.8 84 40.5
Peaxi162Scf00008g02527 Petunia axillaris HOM05D000773 ORTHO05D000588 2.7e-08 62.8 102 37.3
RcHm_v2.0_Chr1g0356691 Rosa chinensis HOM05D000773 ORTHO05D000588 2.7e-08 62.8 109 33.0
Sopen10g005980 Solanum pennellii HOM05D000773 ORTHO05D000588 2.7e-08 62.8 97 38.1
Eucgr.D02306 Eucalyptus grandis HOM05D000773 ORTHO05D000588 3.6e-08 62.4 80 42.5
FAN03G0730 Fragaria x ananassa HOM05D000773 ORTHO05D000588 3.6e-08 62.4 81 40.7
DCAR_000625 Daucus carota HOM05D000773 ORTHO05D000588 4.6e-08 62.0 79 48.1
Dinv32496 Davidia involucrata HOM05D000773 ORTHO05D000588 4.6e-08 62.0 126 36.5
FAN06G1348 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.6e-08 62.0 81 40.7
FAN10G1151 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.6e-08 62.0 81 40.7
FAN10G2616 Fragaria x ananassa HOM05D000773 ORTHO05D000588 4.6e-08 62.0 81 40.7
Lsat_1_v5_gn_7_4241 Lactuca sativa HOM05D000773 ORTHO05D000588 4.6e-08 62.0 110 35.5
Sed0006130 Sechium edule HOM05D000773 ORTHO05D000588 4.6e-08 62.0 106 38.7
Solyc10g012210.3 Solanum lycopersicum HOM05D000773 ORTHO05D000588 4.6e-08 62.0 100 36.0
Glyma.09G257700 Glycine max HOM05D000773 ORTHO05D000588 6.1e-08 61.6 81 39.5
Nn1g01577 Nelumbo nucifera HOM05D000773 ORTHO05D000588 6.1e-08 61.6 123 35.8
Rhsim02G0233300 Rhododendron simsii HOM05D000773 ORTHO05D000588 6.1e-08 61.6 145 31.7
SGA_v2.0_scaffold144G35910 Striga asiatica HOM05D000773 ORTHO05D000588 7.9e-08 61.2 109 36.7
FAN06G3706 Fragaria x ananassa HOM05D000773 ORTHO05D000588 1.0e-07 60.8 81 40.7
Potri.002G161100 Populus trichocarpa HOM05D000773 ORTHO05D000588 1.0e-07 60.8 145 30.3
Actinidia02834 Actinidia chinensis HOM05D000773 ORTHO05D000588 1.4e-07 60.5 91 36.3
Peaxi162Scf00020g00813 Petunia axillaris HOM05D000773 ORTHO05D000588 1.4e-07 60.5 104 35.6
Phvul.008G060800 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 1.4e-07 60.5 96 37.5
Hund11455 Selenicereus undatus HOM05D000773 ORTHO05D000588 1.4e-07 60.5 122 31.1
CAN.G399.6 Capsicum annuum HOM05D000773 ORTHO05D000588 1.8e-07 60.1 129 34.1
Duzib138G1265 Durio zibethinus HOM05D000773 ORTHO05D000588 1.8e-07 60.1 112 33.0
Lalb_Chr10g0096831 Lupinus albus HOM05D000773 ORTHO05D000588 1.8e-07 60.1 120 30.8
Nitab4.5_0000583g0230 Nicotiana tabacum HOM05D000773 ORTHO05D000588 1.8e-07 60.1 84 39.3
TPR.G17906 Trifolium pratense HOM05D000773 ORTHO05D000588 1.8e-07 60.1 95 35.8
Hund16657 Selenicereus undatus HOM05D000773 ORTHO05D000588 2.3e-07 59.7 119 31.9
Cc02_g38230 Coffea canephora HOM05D000773 ORTHO05D000588 3.0e-07 59.3 128 32.0
DCAR_008615 Daucus carota HOM05D000773 ORTHO05D000588 3.0e-07 59.3 118 32.2
Dinv37623 Davidia involucrata HOM05D000773 ORTHO05D000588 3.0e-07 59.3 101 36.6
Glyma.18G234900 Glycine max HOM05D000773 ORTHO05D000588 3.0e-07 59.3 85 37.6
PGSC0003DMG400021657 Solanum tuberosum HOM05D000773 ORTHO05D000588 3.0e-07 59.3 138 31.9
Cpa.g.sc214.10 Carica papaya HOM05D000773 ORTHO05D000588 3.9e-07 58.9 56 48.2
MELO3C016363.2 Cucumis melo HOM05D000773 ORTHO05D000588 3.9e-07 58.9 82 39.0
Oeu019182.1 Olea europaea HOM05D000773 ORTHO05D000588 3.9e-07 58.9 114 33.3
Nitab4.5_0003779g0070 Nicotiana tabacum HOM05D000773 ORTHO05D000588 5.1e-07 58.5 114 32.5
Sopen05g028320 Solanum pennellii HOM05D000773 ORTHO05D000588 5.1e-07 58.5 135 34.1
CiPaw.01G063400 Carya illinoinensis HOM05D000773 ORTHO05D000588 6.7e-07 58.2 128 34.4
Manes.01G060100 Manihot esculenta HOM05D000773 ORTHO05D000588 6.7e-07 58.2 141 30.5
Nitab4.5_0001702g0140 Nicotiana tabacum HOM05D000773 ORTHO05D000588 6.7e-07 58.2 114 32.5
Solyc05g049960.4 Solanum lycopersicum HOM05D000773 ORTHO05D000588 6.7e-07 58.2 135 34.1
CAN.G78.96 Capsicum annuum HOM05D000773 ORTHO05D000588 8.8e-07 57.8 84 40.5
ClCG07G008230 Citrullus lanatus HOM05D000773 ORTHO05D000588 8.8e-07 57.8 94 40.4
Nitab4.5_0001522g0090 Nicotiana tabacum HOM05D000773 ORTHO05D000588 8.8e-07 57.8 75 42.7
arahy.Tifrunner.gnm1.ann1.E2H3M1 Arachis hypogaea HOM05D000773 ORTHO05D000588 1.1e-06 57.4 81 37.0
arahy.Tifrunner.gnm1.ann1.H31DAJ Arachis hypogaea HOM05D000773 ORTHO05D000588 1.1e-06 57.4 81 37.0
Lalb_Chr17g0339461 Lupinus albus HOM05D000773 ORTHO05D000588 1.1e-06 57.4 96 33.3
ECA246G2442 Erigeron canadensis HOM05D000773 ORTHO05D000588 1.5e-06 57.0 85 40.0
Peaxi162Scf00074g02029 Petunia axillaris HOM05D000773 ORTHO05D000588 1.5e-06 57.0 120 33.3
PGSC0003DMG400019394 Solanum tuberosum HOM05D000773 ORTHO05D000588 1.5e-06 57.0 120 33.3
Ca_07937_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 2.0e-06 56.6 94 31.9
Manes.01G255100 Manihot esculenta HOM05D000773 ORTHO05D000588 2.0e-06 56.6 115 32.2
Peaxi162Scf00191g01433 Petunia axillaris HOM05D000773 ORTHO05D000588 2.0e-06 56.6 107 35.5
Sabra01G0076800 Salix brachista HOM05D000773 ORTHO05D000588 2.0e-06 56.6 94 31.9
COL.COLO4_12732 Corchorus olitorius HOM05D000773 ORTHO05D000588 2.5e-06 56.2 102 33.3
CsaV3_4G005870 Cucumis sativus L. HOM05D000773 ORTHO05D000588 2.5e-06 56.2 116 32.8
Duzib268G0149 Durio zibethinus HOM05D000773 ORTHO05D000588 2.5e-06 56.2 81 37.0
Phvul.010G100300 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 2.5e-06 56.2 80 38.8
Sc22g0005520 Simmondsia chinensis HOM05D000773 ORTHO05D000588 2.5e-06 56.2 146 30.1
Ca_23611_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 3.3e-06 55.8 125 31.2
Psat4g212800 Pisum sativum HOM05D000773 ORTHO05D000588 3.3e-06 55.8 114 34.2
Actinidia18414 Actinidia chinensis HOM05D000773 ORTHO05D000588 5.7e-06 55.1 91 35.2
ECA236G2925 Erigeron canadensis HOM05D000773 ORTHO05D000588 5.7e-06 55.1 95 35.8
HanXRQChr06g0170201 Helianthus annuus HOM05D000773 ORTHO05D000588 5.7e-06 55.1 111 30.6
Hund27261 Selenicereus undatus HOM05D000773 ORTHO05D000588 5.7e-06 55.1 67 46.3
Migut.B01773 Erythranthe guttata HOM05D000773 ORTHO05D000588 7.4e-06 54.7 104 33.7
Lj1g0008294 Lotus japonicus HOM05D000773 ORTHO05D000588 7.4e-06 54.7 82 35.4
Oeu042334.1 Olea europaea HOM05D000773 ORTHO05D000588 7.4e-06 54.7 110 31.8
SalBow3G0125 Salvia bowleyana HOM05D000773 ORTHO05D000588 7.4e-06 54.7 118 32.2
Solyc01g094820.3 Solanum lycopersicum HOM05D000773 ORTHO05D000588 7.4e-06 54.7 84 36.9
Nitab4.5_0004114g0010 Nicotiana tabacum HOM05D000773 ORTHO05D000588 9.7e-06 54.3 88 40.9
Sopen01g038590 Solanum pennellii HOM05D000773 ORTHO05D000588 9.7e-06 54.3 126 30.2


User provided reference genes

Program Settings