Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01547 Brassica carinata HOM05D001670 ORTHO05D093698 1.7e-49 199.1 106 100.0
BcaB01g01548 Brassica carinata HOM05D001670 ORTHO05D096367 2.9e-25 118.6 106 68.9
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 5.2e-11 71.2 44 88.6
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 5.2e-11 71.2 44 88.6
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 5.2e-11 71.2 44 88.6
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 5.2e-11 71.2 44 88.6
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.4e-10 68.6 44 81.8
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 84.1
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 5.8e-10 67.8 44 81.8
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 7.6e-10 67.4 92 48.9
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 7.6e-10 67.4 92 50.0
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 9.9e-10 67.0 96 47.9
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 9.9e-10 67.0 49 73.5
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 1.3e-09 66.6 101 46.5
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 1.7e-09 66.2 92 48.9
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.7e-09 66.2 92 48.9
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 1.7e-09 66.2 92 48.9
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 1.7e-09 66.2 92 48.9
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.7e-09 66.2 92 48.9
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 3.8e-09 65.1 92 47.8
BcaB05g24450 Brassica carinata HOM05D001003 ORTHO05D003884 3.8e-09 65.1 54 70.4
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.8e-09 65.1 106 45.3
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 3.8e-09 65.1 48 66.7
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 6.4e-09 64.3 47 72.3
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 6.4e-09 64.3 96 46.9
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 8.4e-09 63.9 48 64.6
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.4e-09 63.9 49 67.3
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.4e-09 63.9 49 67.3
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 8.4e-09 63.9 47 72.3
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 8.4e-09 63.9 56 62.5
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.1e-08 63.5 43 79.1
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.1e-08 63.5 48 68.8
Sp5g24470 Schrenkiella parvula HOM05D001003 ORTHO05D003884 1.1e-08 63.5 54 68.5
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.4e-08 63.2 57 61.4
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.4e-08 63.2 47 72.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.4e-08 63.2 86 47.7
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.4e-08 63.2 86 47.7
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.4e-08 63.2 47 70.2
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.9e-08 62.8 48 64.6
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.9e-08 62.8 47 68.1
AT1G69420 Arabidopsis thaliana HOM05D001003 ORTHO05D003884 2.4e-08 62.4 54 66.7
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 2.4e-08 62.4 93 45.2
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 2.4e-08 62.4 48 68.8
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.2e-08 62.0 47 70.2
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.2e-08 62.0 93 45.2
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 3.2e-08 62.0 48 64.6
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 3.2e-08 62.0 48 64.6
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 4.1e-08 61.6 45 73.3
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 4.1e-08 61.6 86 46.5
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 4.1e-08 61.6 56 58.9
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 4.1e-08 61.6 96 46.9
AL2G28530 Arabidopsis lyrata HOM05D001003 ORTHO05D003884 5.4e-08 61.2 54 64.8
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 5.4e-08 61.2 48 64.6
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 5.4e-08 61.2 94 43.6
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 7.1e-08 60.8 56 60.7
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 7.1e-08 60.8 97 43.3
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 7.1e-08 60.8 47 66.0
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 7.1e-08 60.8 44 70.5
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 9.2e-08 60.5 93 45.2
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 9.2e-08 60.5 93 44.1
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 9.2e-08 60.5 48 62.5
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 9.2e-08 60.5 43 72.1
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 9.2e-08 60.5 86 44.2
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.2e-07 60.1 43 72.1
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.2e-07 60.1 44 68.2
CARHR062300 Cardamine hirsuta HOM05D001003 ORTHO05D003884 1.2e-07 60.1 54 64.8
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.2e-07 60.1 46 67.4
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 1.2e-07 60.1 46 67.4
Thhalv10018316m.g Eutrema salsugineum HOM05D001003 ORTHO05D003884 1.2e-07 60.1 54 64.8
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 1.2e-07 60.1 96 43.8
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 1.2e-07 60.1 96 43.8
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.2e-07 60.1 55 58.2
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.2e-07 60.1 93 45.2
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.2e-07 60.1 43 72.1
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.2e-07 60.1 43 69.8
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 1.2e-07 60.1 52 61.5
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.2e-07 60.1 40 75.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.2e-07 60.1 44 68.2
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.6e-07 59.7 47 63.8
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.6e-07 59.7 56 58.9
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.6e-07 59.7 56 58.9
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 1.6e-07 59.7 42 71.4
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.6e-07 59.7 46 60.9
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.6e-07 59.7 48 66.7
BcaC03g15082 Brassica carinata HOM05D001003 ORTHO05D003884 2.1e-07 59.3 55 65.5
A02p15900 Brassica napus HOM05D001003 ORTHO05D003884 2.1e-07 59.3 37 91.9
C02p26350 Brassica napus HOM05D001003 ORTHO05D003884 2.1e-07 59.3 55 65.5
BraA02t06643Z Brassica rapa HOM05D001003 ORTHO05D003884 2.1e-07 59.3 37 91.9
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 2.1e-07 59.3 46 65.2
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 2.1e-07 59.3 44 68.2
BolC4t23801H Brassica oleracea HOM05D001003 ORTHO05D027039 2.7e-07 58.9 35 88.6
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.7e-07 58.9 46 67.4
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.7e-07 58.9 93 44.1
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 2.7e-07 58.9 86 44.2
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 3.5e-07 58.5 47 57.4
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 3.5e-07 58.5 48 62.5
BcaB03g16396 Brassica carinata HOM05D001003 ORTHO05D016790 3.5e-07 58.5 33 93.9
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 3.5e-07 58.5 56 57.1
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.5e-07 58.5 43 69.8
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.5e-07 58.5 99 41.4
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 3.5e-07 58.5 55 60.0
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 3.5e-07 58.5 40 70.0
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.5e-07 58.5 44 65.9
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 3.5e-07 58.5 46 65.2
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 3.5e-07 58.5 46 65.2
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.5e-07 58.5 37 78.4
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 4.6e-07 58.2 46 65.2
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 4.6e-07 58.2 47 61.7
BcaB03g15471 Brassica carinata HOM05D001003 ORTHO05D003884 4.6e-07 58.2 54 63.0
BcaB03g15903 Brassica carinata HOM05D001003 ORTHO05D003884 4.6e-07 58.2 35 88.6
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 4.6e-07 58.2 45 68.9
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 4.6e-07 58.2 52 57.7
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.6e-07 58.2 52 57.7
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.6e-07 58.2 52 57.7
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.6e-07 58.2 52 57.7
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.6e-07 58.2 52 57.7
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.6e-07 58.2 52 57.7
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 4.6e-07 58.2 85 43.5
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.6e-07 58.2 124 37.1
BcaB03g15893 Brassica carinata HOM05D001003 ORTHO05D003884 6.0e-07 57.8 37 89.2
A07p35720 Brassica napus HOM05D001003 ORTHO05D003884 6.0e-07 57.8 37 89.2
C06p40510 Brassica napus HOM05D001003 ORTHO05D003884 6.0e-07 57.8 37 89.2
BolC2t08708H Brassica oleracea HOM05D001003 ORTHO05D003884 6.0e-07 57.8 55 63.6
BolC6t39380H Brassica oleracea HOM05D001003 ORTHO05D003884 6.0e-07 57.8 37 89.2
BraA07t31159Z Brassica rapa HOM05D001003 ORTHO05D003884 6.0e-07 57.8 37 89.2
Carub.0002s1602 Capsella rubella HOM05D001003 ORTHO05D003884 6.0e-07 57.8 55 65.5
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 6.0e-07 57.8 47 59.6
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 6.0e-07 57.8 47 61.7
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 6.0e-07 57.8 56 55.4
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 6.0e-07 57.8 46 65.2
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 6.0e-07 57.8 52 55.8
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 6.0e-07 57.8 46 67.4
BcaB06g27994 Brassica carinata HOM05D001003 ORTHO05D016790 7.8e-07 57.4 33 90.9
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 7.8e-07 57.4 43 67.4
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 7.8e-07 57.4 91 44.0
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 1.0e-06 57.0 47 59.6
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 1.0e-06 57.0 46 65.2
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.3e-06 56.6 85 43.5
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.7e-06 56.2 56 51.8
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.7e-06 56.2 55 54.5
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.7e-06 56.2 47 63.8
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.3e-06 55.8 46 58.7
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.3e-06 55.8 41 65.9
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 3.0e-06 55.5 47 59.6
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 3.0e-06 55.5 47 59.6
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 3.9e-06 55.1 61 50.8
BcaB05g24387 Brassica carinata HOM05D001003 ORTHO05D027039 5.1e-06 54.7 36 80.6
C04p23070 Brassica napus HOM05D001003 ORTHO05D027039 5.1e-06 54.7 35 82.9
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 5.1e-06 54.7 46 58.7
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 5.1e-06 54.7 51 52.9
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 6.6e-06 54.3 47 57.4
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 6.6e-06 54.3 37 70.3


User provided reference genes

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