Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 7.4e-136 487.3 257 100.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-108 396.4 223 92.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 8.3e-103 377.5 223 87.9
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 2.4e-102 375.9 220 86.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 4.1e-102 375.2 223 87.4
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.6e-100 367.9 231 81.4
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.9e-99 366.3 218 84.4
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-98 362.5 213 85.9
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 8.0e-98 360.9 213 85.4
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.4e-97 360.1 221 83.7
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.8e-97 359.8 213 84.5
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-97 359.4 221 83.7
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.0e-97 359.0 221 83.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.5e-96 356.7 219 81.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.4e-96 355.5 209 85.2
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-90 336.7 220 75.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.4e-86 321.6 205 77.6
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 7.0e-86 321.2 216 72.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.2e-82 308.1 217 69.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.4e-81 307.0 204 75.0
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.0e-80 303.1 216 70.4
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.0e-80 303.1 216 70.4
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.6e-80 302.8 216 70.4
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 2.6e-80 302.8 204 74.0
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.4e-80 302.4 216 70.4
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 5.8e-80 301.6 184 78.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.7e-79 300.1 209 72.7
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.2e-79 299.7 222 68.0
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-79 299.3 213 75.1
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.7e-79 298.9 208 72.1
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 6.4e-79 298.1 202 72.3
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 8.3e-79 297.7 209 70.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 8.3e-79 297.7 184 78.8
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.3e-79 297.7 219 68.5
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 8.3e-79 297.7 198 73.2
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.1e-78 297.4 232 65.9
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.1e-78 297.4 212 70.3
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-78 297.0 225 66.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.9e-78 296.6 224 67.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.4e-78 296.2 223 68.6
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.4e-78 296.2 226 69.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.2e-78 295.8 216 69.9
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.4e-78 295.0 221 64.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 9.2e-78 294.3 221 68.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.2e-77 293.9 218 69.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.2e-77 293.9 234 65.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.6e-77 293.5 197 73.6
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.6e-77 293.5 192 75.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-77 293.5 199 73.4
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-77 293.1 199 72.9
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.7e-77 292.7 207 71.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.5e-77 292.4 194 74.7
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 3.5e-77 292.4 201 72.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.5e-77 292.4 227 67.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 4.6e-77 292.0 217 69.1
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.0e-77 291.6 225 65.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 6.0e-77 291.6 216 68.5
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 7.8e-77 291.2 201 72.1
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.0e-76 290.8 218 67.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.0e-76 290.8 214 67.8
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.0e-76 290.8 215 66.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.3e-76 290.4 192 76.0
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 3.0e-76 289.3 219 66.2
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-76 289.3 224 66.5
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-76 289.3 221 67.4
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.0e-76 289.3 229 65.5
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.0e-76 289.3 218 68.8
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.9e-76 288.9 193 73.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.9e-76 288.9 195 72.8
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 5.1e-76 288.5 180 76.1
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 5.1e-76 288.5 208 68.3
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 6.6e-76 288.1 185 73.5
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 6.6e-76 288.1 190 74.7
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 8.6e-76 287.7 221 65.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.1e-75 287.3 184 75.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.1e-75 287.3 208 69.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-75 287.0 196 71.9
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.5e-75 287.0 193 71.5
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.5e-75 287.0 222 66.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.9e-75 286.6 218 65.1
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 2.5e-75 286.2 221 66.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.5e-75 286.2 180 75.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 3.3e-75 285.8 224 65.6
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.3e-75 285.4 204 66.2
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 4.3e-75 285.4 215 66.0
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 7.3e-75 284.6 242 59.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 9.5e-75 284.3 214 67.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.2e-74 283.9 217 67.7
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.2e-74 283.9 194 72.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-74 283.5 184 76.1
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.6e-74 283.5 211 65.4
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.1e-74 283.1 220 66.8
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.8e-74 282.7 225 65.3
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.8e-74 282.7 226 67.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.6e-74 282.3 181 75.1
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 6.2e-74 281.6 217 65.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.1e-74 281.2 217 62.7
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.1e-74 281.2 208 67.8
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-73 280.4 220 63.2
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.4e-73 280.4 222 66.7
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.4e-73 280.4 220 65.9
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-73 279.3 223 63.2
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 3.1e-73 279.3 201 66.7
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 4.0e-73 278.9 213 65.3
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 6.8e-73 278.1 223 62.3
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 6.8e-73 278.1 186 70.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-72 277.3 219 63.0
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-72 277.3 223 62.3
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-72 277.3 223 62.3
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.0e-72 276.6 205 65.4
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 5.8e-72 275.0 188 72.9
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 7.6e-72 274.6 219 64.4
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.9e-72 274.2 205 64.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.2e-71 273.1 220 65.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-71 271.9 200 69.0
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-70 270.0 203 64.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 5.4e-70 268.5 182 72.0
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 9.2e-70 267.7 205 65.4
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.7e-68 263.5 184 71.2
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.6e-68 261.5 218 61.5
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.9e-67 260.0 242 56.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.5e-67 259.6 199 65.8
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 8.1e-66 254.6 193 64.2
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 8.1e-66 254.6 185 70.3
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.4e-65 253.8 184 70.1
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.1e-65 252.7 202 63.4
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.2e-64 250.8 179 67.6
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 2.0e-64 250.0 175 71.4
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.3e-63 247.3 188 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.8e-63 245.7 196 61.7
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.1e-62 244.2 179 65.9
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 5.4e-62 241.9 183 62.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.7e-60 236.9 185 63.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 9.9e-56 221.1 155 68.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.9e-56 221.1 197 57.4
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.4e-54 215.3 199 57.8
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.1e-54 214.9 152 68.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 8.1e-50 201.4 134 73.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.8e-49 200.3 177 61.0
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 6.9e-49 198.4 177 58.2
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.7e-47 193.7 169 59.8
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 8.4e-47 191.4 202 54.0
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.7e-45 186.4 172 59.9
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.5e-45 186.0 124 75.8
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-44 183.0 99 94.9
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 5.1e-44 182.2 118 72.0
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-43 180.6 188 51.1
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-41 174.5 184 53.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.2e-39 166.8 127 66.9
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.9e-38 163.7 184 52.2
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 4.2e-38 162.5 180 50.0
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 9.3e-38 161.4 130 63.8
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.7e-37 159.8 133 62.4
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 7.9e-37 158.3 183 47.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.8e-33 147.1 79 91.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-32 144.1 80 88.8
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.2e-26 123.6 103 59.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.6e-24 116.7 78 69.2
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.2e-22 108.6 87 60.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.0e-20 104.8 114 50.9
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 9.7e-19 98.2 124 45.2
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-16 90.9 88 53.4
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.1e-13 79.0 164 32.9
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.4e-11 72.8 52 65.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.7e-10 70.9 133 38.3
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 6.3e-10 68.9 123 36.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 6.3e-10 68.9 200 30.0
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-09 67.4 56 64.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.1e-09 65.1 67 44.8
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.0e-08 63.9 156 33.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 6.5e-07 58.9 42 61.9
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-06 57.8 44 54.5
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-06 57.4 62 51.6
BcaB01g01923 Brassica carinata HOM05D004152 ORTHO05D092139 2.5e-06 57.0 122 45.9
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.5e-06 57.0 144 29.2
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 5.5e-06 55.8 36 77.8


User provided reference genes

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