Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 0.0e+00 1703.3 886 100.0
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 0.0e+00 1206.4 903 71.2
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 0.0e+00 1164.8 898 67.7
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 0.0e+00 1132.9 925 66.1
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 0.0e+00 1131.7 899 67.9
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1120.1 843 70.0
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 0.0e+00 1110.1 897 66.3
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 0.0e+00 1109.7 896 66.9
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 0.0e+00 1104.0 891 66.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 0.0e+00 1099.0 892 66.4
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 0.0e+00 1098.6 891 67.1
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 0.0e+00 1093.2 824 71.5
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 0.0e+00 1089.7 890 65.7
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 0.0e+00 1083.6 891 65.4
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 0.0e+00 1083.6 832 68.8
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 0.0e+00 1081.6 904 64.9
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 4.7e-311 1071.2 820 68.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.0e-310 1070.1 907 64.3
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 3.0e-310 1068.5 902 63.6
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 8.7e-310 1067.0 899 63.8
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.5e-309 1066.2 899 63.6
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 2.5e-309 1065.4 743 75.5
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.3e-309 1065.1 822 67.8
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 4.8e-308 1061.2 899 63.4
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 6.2e-308 1060.8 893 63.7
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 4.0e-307 1058.1 882 64.4
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 1.3e-305 1053.1 919 62.2
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 3.2e-304 1048.5 897 63.1
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.2e-304 1048.5 819 66.8
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.6e-303 1046.2 904 62.9
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 3.3e-301 1038.5 906 63.5
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 7.4e-301 1037.3 890 63.0
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 2.2e-300 1035.8 938 61.0
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 3.7e-300 1035.0 817 67.1
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.9e-297 1025.4 893 61.4
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.5e-296 1022.3 897 62.2
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 5.5e-296 1021.1 895 61.5
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 7.2e-296 1020.8 892 60.9
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 9.3e-296 1020.4 894 61.3
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 1.2e-295 1020.0 907 60.3
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 2.1e-295 1019.2 897 61.9
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 6.1e-295 1017.7 904 61.1
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.0e-294 1016.9 817 64.4
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 1.0e-294 1016.9 818 64.3
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 8.8e-294 1013.8 911 61.8
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.5e-293 1012.3 888 61.1
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.5e-293 1012.3 897 60.6
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 2.8e-292 1008.8 816 64.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 3.7e-292 1008.4 893 60.9
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 3.4e-290 1001.9 885 60.7
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 3.8e-289 998.4 885 59.8
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 3.0e-286 988.8 908 60.2
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 2.0e-285 986.1 813 63.8
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.3e-281 973.4 896 59.5
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 5.0e-281 971.5 918 58.8
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.1e-280 970.3 889 58.7
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 1.8e-275 953.0 888 59.2
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 2.4e-275 952.6 897 61.2
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 7.0e-275 951.0 803 62.6
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 2.0e-274 949.5 800 63.2
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.1e-272 943.7 835 60.2
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 1.9e-272 943.0 797 63.2
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 9.4e-272 940.6 888 58.2
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.0e-270 937.2 897 58.2
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 5.2e-270 934.9 800 61.9
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 6.7e-270 934.5 820 62.1
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 8.8e-270 934.1 799 61.8
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 1.2e-269 933.7 801 62.4
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 1.1e-267 927.2 814 61.3
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 3.1e-267 925.6 942 55.3
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.7e-266 922.5 819 61.5
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.2e-265 919.5 826 59.8
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 3.8e-265 918.7 876 58.4
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 6.5e-265 917.9 839 59.6
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 1.1e-264 917.1 865 58.4
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 2.5e-264 916.0 801 61.8
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 3.6e-263 912.1 871 58.6
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 4.7e-263 911.8 871 58.4
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 8.0e-263 911.0 894 58.2
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 3.0e-262 909.1 804 60.8
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 3.0e-262 909.1 804 60.8
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 2.0e-261 906.4 805 60.9
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 5.7e-261 904.8 804 60.4
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 7.5e-261 904.4 744 64.8
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 2.4e-259 899.4 801 59.9
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 3.1e-259 899.0 845 59.9
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 2.9e-257 892.5 805 60.4
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.0e-254 882.5 697 66.1
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 3.7e-252 875.5 796 59.5
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.6e-250 870.2 742 62.0
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 2.9e-249 865.9 862 56.4
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.1e-248 864.0 825 57.0
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 1.0e-241 840.9 828 54.8
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 5.1e-233 812.0 902 52.8
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 1.1e-232 810.8 820 55.4
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 3.4e-221 772.7 817 53.5
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 4.4e-221 772.3 817 54.2
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 2.2e-212 743.4 815 51.7
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 7.7e-173 612.1 526 61.6
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 5.1e-169 599.4 836 45.2
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.4e-161 574.7 839 43.0
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.3e-148 531.6 852 40.8
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 1.1e-147 528.5 888 40.2
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 5.4e-142 509.6 674 47.6
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 2.6e-136 490.7 526 53.2
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.0e-124 452.2 440 54.5
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.8e-120 436.4 353 61.2
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.7e-93 347.8 226 77.4
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.3e-90 339.0 492 44.1
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.1e-89 335.9 1007 31.2
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 3.4e-64 251.1 729 32.5
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.9e-56 223.8 198 60.6
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 6.1e-45 187.2 229 45.4
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.3e-44 185.3 106 83.0
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 2.0e-43 182.2 325 41.8
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 7.5e-43 180.3 106 82.1
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 2.2e-42 178.7 363 36.6
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 5.9e-32 144.1 90 81.1
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 5.6e-22 110.9 811 23.6
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 9.5e-22 110.2 170 42.9
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.8e-21 108.6 147 40.1
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 4.7e-21 107.8 73 71.2
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.9e-14 85.9 46 84.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 8.6e-07 60.5 92 35.9
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 9.5e-06 57.0 140 32.9


User provided reference genes

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