Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 9.4e-133 476.9 241 100.0
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 8.8e-115 417.2 241 85.5
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 9.2e-112 407.1 240 81.7
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 4.5e-111 404.8 240 81.2
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.6e-109 397.9 234 83.8
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 9.5e-109 397.1 241 79.7
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.6e-108 395.2 239 82.0
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.4e-107 393.3 241 81.3
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.4e-107 393.3 240 80.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 3.0e-107 392.1 241 80.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 5.2e-107 391.3 241 80.9
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 6.8e-107 391.0 241 80.5
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 6.8e-107 391.0 240 80.8
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 6.8e-107 391.0 241 78.8
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.2e-106 390.2 239 79.9
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.0e-106 389.4 231 82.3
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.4e-106 388.7 239 79.1
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 3.4e-106 388.7 241 79.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.3e-105 386.7 241 80.1
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.7e-105 386.3 240 78.3
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.9e-105 385.6 240 77.9
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.9e-105 385.6 241 78.0
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 3.7e-105 385.2 238 78.6
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.7e-105 385.2 240 79.6
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.8e-104 382.9 241 78.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.8e-104 382.9 241 76.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.2e-104 382.1 241 78.8
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 7.0e-104 380.9 233 81.1
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 9.2e-104 380.6 241 76.3
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.2e-103 380.2 241 78.0
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 2.0e-103 379.4 239 77.4
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.7e-103 379.0 241 76.8
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.7e-103 379.0 241 77.2
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.7e-103 379.0 241 78.4
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.5e-103 378.6 241 78.0
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 75.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 77.2
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 5.9e-103 377.9 240 77.1
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.9e-102 375.2 239 77.4
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.9e-102 375.2 239 77.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 5.0e-102 374.8 274 71.2
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.0e-102 374.8 241 76.3
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.3e-101 372.1 240 75.8
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 4.3e-101 371.7 235 76.6
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 9.5e-101 370.5 240 77.5
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.6e-100 369.8 249 73.9
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.6e-100 369.8 241 74.3
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 6.2e-100 367.9 234 77.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 8.0e-100 367.5 241 73.0
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 8.0e-100 367.5 241 75.9
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.0e-99 367.1 236 76.7
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-99 367.1 241 76.3
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.0e-99 367.1 239 76.2
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.0e-99 367.1 241 74.7
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.0e-99 367.1 241 75.1
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.4e-99 366.7 232 78.0
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.3e-99 365.9 222 81.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-99 365.9 235 75.3
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.1e-99 365.5 241 74.3
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.0e-99 365.2 240 74.6
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.0e-99 365.2 211 84.4
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 5.2e-99 364.8 239 75.7
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.2e-99 364.8 235 75.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.9e-99 364.0 235 74.9
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-98 362.8 235 74.9
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 2.6e-98 362.5 234 75.6
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 5.8e-98 361.3 239 75.3
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.7e-97 359.8 260 70.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.2e-97 359.4 233 76.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.7e-97 358.6 231 74.5
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.7e-97 358.6 239 76.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.7e-97 358.6 234 74.4
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.1e-96 357.1 239 75.3
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.1e-96 357.1 239 75.3
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.1e-96 357.1 239 75.3
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.1e-96 357.1 233 75.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.1e-96 357.1 237 74.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.9e-96 356.3 242 73.1
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-96 356.3 340 57.4
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 9.2e-96 354.0 212 83.0
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 3.5e-95 352.1 224 77.2
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.5e-95 352.1 239 74.5
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.8e-95 350.9 236 74.6
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.3e-94 350.1 266 66.9
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.0e-94 349.0 239 72.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.6e-94 347.8 239 71.1
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 6.6e-94 347.8 239 73.6
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.9e-93 346.3 208 81.7
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 2.5e-93 345.9 241 73.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.3e-93 345.5 241 71.4
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 7.3e-93 344.4 239 73.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 6.2e-92 341.3 234 72.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.8e-91 339.7 241 70.5
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.3e-91 339.3 239 69.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.2e-91 338.2 290 60.3
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 6.8e-91 337.8 202 80.7
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.6e-90 335.9 240 70.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.7e-89 333.2 209 76.6
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 4.9e-89 331.6 242 69.4
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.2e-87 327.0 213 74.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.5e-87 325.5 199 80.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 3.0e-86 322.4 283 61.5
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 4.0e-83 312.0 241 68.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.2e-82 310.5 241 66.0
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 4.4e-82 308.5 206 72.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.0e-78 297.4 239 65.3
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.1e-77 293.9 190 76.3
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.9e-77 293.1 176 78.4
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 5.8e-74 281.6 171 79.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.3e-73 280.4 232 60.8
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.2e-72 275.8 167 79.6
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.3e-69 265.8 237 56.5
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.1e-67 260.8 228 56.1
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.2e-63 247.3 145 80.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.3e-61 238.8 149 78.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.1e-55 219.9 140 77.1
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.1e-55 219.9 140 77.1
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 6.0e-55 218.4 135 78.5
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 3.3e-53 212.6 182 62.1
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 5.6e-53 211.8 123 82.1
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.6e-52 210.3 191 53.9
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.4e-51 206.5 174 63.8
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.0e-49 201.1 230 46.1
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.2e-48 196.1 127 77.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.2e-47 194.1 131 71.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-46 190.3 120 78.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.1e-46 188.7 120 77.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.9e-45 186.8 121 73.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 5.3e-43 178.7 120 70.8
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.9e-40 170.2 234 41.9
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.1e-35 152.5 129 62.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 3.8e-33 146.0 143 53.8
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.1e-32 144.4 121 62.8
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.4e-32 141.4 101 71.3
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.0e-29 133.7 176 43.2
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.7e-28 130.6 111 62.2
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 6.3e-28 128.6 81 77.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 4.1e-27 125.9 85 68.2
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 4.5e-26 122.5 240 36.2
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 7.7e-26 121.7 86 69.8
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-25 120.9 90 58.9
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.2e-24 115.2 106 57.5
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.9e-22 109.4 91 56.0
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.0e-21 107.1 100 60.0
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.3e-20 104.4 72 72.2
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.4e-19 100.9 190 31.6
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-18 97.8 56 83.9
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-17 93.2 51 82.4
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.4e-16 88.2 61 70.5
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 7.5e-13 78.6 163 35.6
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.5e-08 64.3 35 80.0
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 2.1e-07 60.5 30 93.3
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-06 58.2 32 75.0


User provided reference genes

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