Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1124 Acer truncatum HOM05D001937 ORTHO05D003828 0.0e+00 1307.0 800 100.0
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 3.7e-218 762.3 1059 55.6
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 2.1e-184 650.2 1040 50.7
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 1.3e-183 647.5 1056 48.4
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 1.7e-183 647.1 1055 49.3
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 7.6e-179 631.7 1053 46.4
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 1.6e-176 624.0 1051 45.9
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 3.3e-174 616.3 1048 48.9
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 2.4e-172 610.1 1048 48.7
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 3.1e-172 609.8 1053 45.1
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 1.1e-169 601.3 1035 46.4
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 1.2e-168 597.8 1064 46.8
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 2.7e-168 596.7 1048 42.2
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 1.1e-166 591.3 1053 43.6
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 4.5e-163 579.3 1050 45.5
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 4.2e-161 572.8 1062 45.4
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 6.0e-160 568.9 1018 47.6
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 7.9e-160 568.5 822 56.7
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 7.9e-160 568.5 1052 41.3
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 4.3e-158 562.8 1041 43.2
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 1.4e-156 557.8 1052 44.4
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.8e-156 557.4 1048 43.2
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.8e-156 557.4 1050 45.0
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 2.6e-155 553.5 1062 43.6
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.1e-153 548.1 1041 44.4
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.2e-152 544.7 1048 42.9
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 6.0e-152 542.3 1063 43.4
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 1.8e-151 540.8 1073 42.9
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 3.0e-151 540.0 1047 38.7
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 3.9e-151 539.7 1066 41.9
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 1.1e-150 538.1 1048 40.9
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 5.7e-150 535.8 1047 42.0
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.0e-146 525.0 1058 41.4
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.0e-146 525.0 1058 41.4
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 6.5e-146 522.3 1052 42.4
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 6.5e-146 522.3 1073 39.4
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 4.2e-145 519.6 1051 41.8
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 7.2e-145 518.8 1126 40.8
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 1.4e-143 514.6 1013 43.2
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 1.3e-141 508.1 1152 37.6
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 3.1e-140 503.4 1048 40.1
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 6.9e-140 502.3 1038 41.8
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.5e-139 499.6 1047 37.6
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 7.7e-139 498.8 1046 37.3
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 1.4e-137 494.6 1066 38.8
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 1.4e-137 494.6 1046 40.0
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 2.5e-137 493.8 1056 37.5
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 3.2e-137 493.4 1051 37.3
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 4.2e-137 493.0 1045 39.8
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 9.4e-137 491.9 1047 38.6
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 2.7e-136 490.3 1048 37.3
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 1.1e-134 485.0 1046 39.1
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 3.3e-134 483.4 1050 40.8
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 1.4e-132 478.0 1047 39.1
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 7.0e-132 475.7 1101 35.1
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 1.0e-130 471.9 1064 39.7
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 1.3e-130 471.5 1047 38.9
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 9.4e-129 465.3 1048 38.7
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 6.1e-128 462.6 1050 39.1
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 5.2e-127 459.5 1054 38.4
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 5.7e-126 456.1 1052 34.8
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 9.7e-126 455.3 1013 35.9
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 4.8e-125 453.0 1046 36.4
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 1.8e-124 451.1 1047 35.9
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 3.1e-124 450.3 1050 36.7
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 7.0e-124 449.1 1047 37.7
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 3.5e-123 446.8 1057 36.1
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 1.3e-122 444.9 1036 35.6
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 1.7e-122 444.5 1012 35.2
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 5.0e-122 443.0 1058 38.6
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 1.0e-119 435.3 1046 38.4
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 1.8e-119 434.5 1056 34.6
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 4.0e-119 433.3 1055 38.7
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 2.0e-118 431.0 1060 34.9
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 7.5e-118 429.1 1115 34.1
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 4.8e-117 426.4 1045 34.4
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 4.1e-116 423.3 1044 36.2
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 3.5e-115 420.2 1061 34.8
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 7.7e-115 419.1 1057 35.0
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 7.7e-115 419.1 1057 35.0
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 1.3e-114 418.3 1057 35.1
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 8.5e-114 415.6 1015 35.3
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 4.2e-113 413.3 1055 37.5
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 4.2e-113 413.3 1056 35.3
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 9.4e-113 412.1 1013 37.9
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 9.4e-113 412.1 1013 37.9
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.0e-111 408.7 1057 38.4
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 1.4e-111 408.3 1041 34.1
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 3.4e-110 403.7 912 35.9
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 9.8e-110 402.1 1058 34.0
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 2.8e-109 400.6 1045 33.1
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 3.7e-109 400.2 1257 35.9
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 1.8e-108 397.9 1060 33.8
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 5.9e-107 392.9 1081 35.7
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 1.2e-104 385.2 1012 35.9
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.1e-97 362.1 1025 33.7
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 4.1e-92 343.6 973 32.3
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 8.6e-90 335.9 1024 33.5
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 5.2e-87 326.6 1048 30.2
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 8.3e-85 319.3 1001 31.3
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-84 318.5 1005 32.3
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 2.4e-84 317.8 1023 31.8
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 4.1e-84 317.0 1013 31.3
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 5.4e-84 316.6 1006 31.3
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 7.1e-84 316.2 406 49.5
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 7.1e-84 316.2 1005 31.2
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 2.1e-83 314.7 1006 31.3
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 5.6e-81 306.6 1025 33.2
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 1.6e-80 305.1 622 39.2
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 3.6e-80 303.9 516 42.8
HPP92_017202 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.1e-79 302.4 772 37.8
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 2.0e-78 298.1 1012 29.6
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 4.4e-78 297.0 890 32.2
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 9.9e-78 295.8 1016 30.4
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 4.1e-76 290.4 764 38.0
Atru.chr3.3790 Acer truncatum HOM05D001937 ORTHO05D003828 1.3e-69 268.9 314 73.2
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.7e-59 234.6 1178 28.0
Os06g0645800 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 6.6e-58 229.9 838 28.0
QL03p072736 Quercus lobata HOM05D001937 ORTHO05D003828 4.8e-56 223.8 297 55.6
Atru.chr3.3789 Acer truncatum HOM05D001937 ORTHO05D003828 6.9e-55 219.9 180 65.6
QL12p030812 Quercus lobata HOM05D001937 ORTHO05D003828 6.7e-50 203.4 297 53.2
Aqoxy3G01594 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 4.3e-49 200.7 398 36.7
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 4.3e-49 200.7 468 37.2
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 7.4e-49 199.9 515 35.3
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 2.1e-43 181.8 1129 30.8
QL03p060281 Quercus lobata HOM05D001937 ORTHO05D003828 1.3e-40 172.6 222 59.0
QL11p029100 Quercus lobata HOM05D001937 ORTHO05D003828 2.8e-40 171.4 222 59.0
QL03p022329 Quercus lobata HOM05D001937 ORTHO05D003828 1.1e-39 169.5 222 57.7
QL11p053735 Quercus lobata HOM05D001937 ORTHO05D003828 1.8e-39 168.7 200 61.5
RcHm_v2.0_Chr5g0013491 Rosa chinensis HOM05D001937 ORTHO05D003828 3.1e-39 167.9 247 54.3
TAR374G0100 Trochodendron aralioides HOM05D001937 ORTHO05D003828 3.1e-39 167.9 153 59.5
TAR628G0280 Trochodendron aralioides HOM05D001937 ORTHO05D003828 2.1e-35 155.2 161 53.4
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 2.3e-34 151.8 1121 26.4
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 8.2e-32 143.3 1158 27.9
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 5.3e-31 140.6 578 26.5
Rhsim05G0102700 Rhododendron simsii HOM05D001937 ORTHO05D009414 2.6e-30 138.3 335 37.3
BraA06t23460Z Brassica rapa HOM05D001937 ORTHO05D003828 1.7e-29 135.6 108 61.1
SEGI_36763 Sequoiadendron giganteum HOM05D001937 ORTHO05D000001 6.5e-29 133.7 112 56.2
CARHR094460 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.1e-28 132.9 97 68.0
SEGI_20322 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 1.9e-28 132.1 175 50.3
BcaC08g43307 Brassica carinata HOM05D001937 ORTHO05D003828 1.6e-27 129.0 94 66.0
Aa31LG7G15320 Aethionema arabicum HOM05D001937 ORTHO05D003828 8.8e-26 123.2 235 37.9
SEGI_35630 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 2.0e-25 122.1 141 46.8
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 2.2e-24 118.6 157 44.6
SMO118G0440 Selaginella moellendorffii HOM05D001937 ORTHO05D003828 6.3e-24 117.1 107 53.3
A06p02530 Brassica napus HOM05D001937 ORTHO05D003828 8.2e-24 116.7 82 67.1
Prupe.1G558900 Prunus persica HOM05D001937 ORTHO05D003828 2.6e-22 111.7 151 45.0
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 4.5e-22 110.9 109 50.5
Rhsim05G0102800 Rhododendron simsii HOM05D001937 ORTHO05D000007 3.2e-20 104.8 252 34.1
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 7.2e-20 103.6 109 53.2
Os06g0645700 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 2.3e-18 98.6 69 68.1
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 1.1e-17 96.3 179 41.3
C06p06540 Brassica napus HOM05D001937 ORTHO05D003828 9.7e-17 93.2 73 60.3
BolC6t35766H Brassica oleracea HOM05D001937 ORTHO05D003828 9.7e-17 93.2 73 60.3
Mapoly0048s0004 Marchantia polymorpha HOM05D001937 ORTHO05D003828 1.3e-16 92.8 278 33.5
QL04p008924 Quercus lobata HOM05D001937 ORTHO05D003828 1.4e-15 89.4 222 42.3
QL12p036527 Quercus lobata HOM05D001937 ORTHO05D003828 1.4e-15 89.4 222 42.3
QL02p062665 Quercus lobata HOM05D001937 ORTHO05D003828 2.0e-14 85.5 223 41.3
QL06p020738 Quercus lobata HOM05D001937 ORTHO05D003828 2.0e-14 85.5 223 41.3
DCAR_010386 Daucus carota HOM05D030126 ORTHO05D029202 1.5e-12 79.3 64 54.7
Lsat_1_v5_gn_9_58581 Lactuca sativa HOM05D000390 ORTHO05D003828 1.9e-12 79.0 69 55.1
DCAR_010381 Daucus carota HOM05D030126 ORTHO05D029202 5.5e-12 77.4 64 53.1
Lsat_1_v5_gn_5_13461 Lactuca sativa HOM05D002884 ORTHO05D003828 1.6e-11 75.9 104 39.4
PRCOL_00000485 Prasinoderma coloniale HOM05D001937 ORTHO05D003828 6.7e-10 70.5 116 37.1
PSO384G4225 Papaver somniferum HOM05D003118 ORTHO05D003618 2.0e-09 68.9 208 32.2
Lsat_1_v5_gn_4_144260 Lactuca sativa HOM05D001937 ORTHO05D003828 1.3e-08 66.2 63 61.9
PSO266G0025 Papaver somniferum HOM05D048025 ORTHO05D003828 1.3e-08 66.2 193 35.8
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 3.1e-07 61.6 437 22.4
Hund17848 Selenicereus undatus HOM05D000336 ORTHO05D000593 2.7e-06 58.5 102 41.2
Nn4g23023 Nelumbo nucifera HOM05D001937 ORTHO05D003828 5.9e-06 57.4 83 45.8
PSO266G0061 Papaver somniferum HOM05D001937 ORTHO05D003828 5.9e-06 57.4 196 30.6


User provided reference genes

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