Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 7.9e-126 453.8 224 100.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.4e-108 394.8 224 86.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 6.3e-107 391.0 224 83.0
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.1e-106 390.2 224 82.1
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 3.8e-104 381.7 219 81.3
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.9e-103 379.4 224 79.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.2e-103 378.6 224 79.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.2e-103 378.6 217 82.5
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.2e-103 378.6 217 82.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.6e-102 376.3 217 81.1
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.6e-102 375.2 224 78.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.6e-102 375.2 224 79.5
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 6.1e-102 374.4 224 79.9
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.0e-101 373.6 224 79.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.0e-101 373.6 224 77.7
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.8e-101 372.9 223 78.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 4.0e-101 371.7 217 79.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.8e-101 370.9 225 79.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.0e-100 369.4 224 77.7
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.0e-100 369.4 218 80.7
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.6e-100 369.0 224 79.0
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.6e-100 369.0 220 79.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 5.7e-100 367.9 226 78.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 7.5e-100 367.5 219 76.7
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 9.8e-100 367.1 261 69.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 9.8e-100 367.1 261 69.7
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.3e-99 366.7 224 75.9
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.7e-99 366.3 217 79.3
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 8.3e-99 364.0 252 72.6
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 5.4e-98 361.3 224 76.8
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 7.0e-98 360.9 224 76.8
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 9.1e-98 360.5 224 76.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-97 360.1 223 76.7
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.0e-96 357.1 225 76.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-96 354.0 225 76.4
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-95 352.8 225 76.0
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.5e-95 352.4 237 71.7
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.5e-95 352.4 225 76.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.5e-95 351.3 224 71.9
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.1e-94 347.8 224 70.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 6.8e-93 344.4 220 75.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.2e-92 343.6 224 74.1
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.6e-92 342.4 219 72.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.4e-92 342.0 215 71.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 4.4e-92 341.7 219 72.1
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 5.7e-92 341.3 219 72.6
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 7.5e-92 340.9 224 72.3
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.3e-91 340.1 219 72.6
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.2e-91 339.3 216 75.5
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.8e-91 339.0 224 72.8
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.7e-91 338.6 226 73.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 8.3e-91 337.4 219 73.5
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 8.3e-91 337.4 224 71.4
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.8e-90 336.3 219 71.2
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.8e-90 336.3 224 73.2
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 7.0e-90 334.3 219 71.2
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 9.2e-90 334.0 220 72.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.2e-89 333.6 224 71.0
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 4.5e-89 331.6 218 71.1
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.0e-88 330.5 217 70.0
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.7e-88 329.7 216 71.3
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.9e-88 328.9 222 70.7
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.9e-88 328.9 220 72.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.8e-88 328.6 219 71.7
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.9e-87 326.2 218 70.2
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.9e-87 326.2 218 70.2
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.9e-87 326.2 219 67.6
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.5e-87 325.9 266 62.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.3e-87 325.5 244 66.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.5e-87 323.9 216 72.2
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.1e-86 322.8 219 67.6
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 3.6e-86 322.0 216 69.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 8.0e-86 320.9 252 62.7
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 6.8e-85 317.8 219 65.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.5e-84 316.6 213 70.9
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.0e-84 316.2 218 67.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.6e-84 315.8 224 65.6
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.6e-84 315.8 219 66.7
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 2.6e-84 315.8 218 67.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.4e-84 315.5 216 67.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 3.4e-84 315.5 219 67.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.8e-84 313.9 203 71.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-83 313.5 219 66.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-83 313.2 216 67.1
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.7e-83 312.0 216 67.1
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.9e-83 311.6 216 65.7
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 4.9e-83 311.6 216 65.7
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.9e-83 311.6 216 65.7
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.4e-82 310.1 211 69.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-82 310.1 222 63.1
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.4e-82 309.3 217 65.9
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.2e-82 308.9 217 65.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.0e-80 303.9 216 64.8
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 3.9e-80 302.0 216 64.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 7.3e-79 297.7 219 65.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.4e-77 293.5 203 66.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.3e-77 292.7 216 61.1
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.6e-76 289.3 214 68.2
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.6e-76 289.3 219 65.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.6e-76 289.3 170 84.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.4e-76 288.5 216 60.6
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.5e-73 278.9 226 57.1
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-72 277.3 217 59.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-72 275.8 216 59.7
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.1e-70 269.6 220 56.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 4.7e-70 268.5 219 58.4
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 8.1e-70 267.7 225 63.6
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 6.8e-69 264.6 170 75.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.8e-69 264.6 169 76.3
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.8e-69 264.6 169 76.3
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 5.8e-68 261.5 217 52.1
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.1e-66 257.3 174 73.6
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.1e-65 253.1 170 71.8
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.5e-63 246.1 189 64.6
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.5e-63 244.2 216 55.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.5e-63 244.2 186 62.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-61 240.7 189 59.8
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 6.8e-61 238.0 214 47.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 3.4e-60 235.7 142 79.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.4e-60 235.3 211 51.7
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.1e-58 230.7 137 80.3
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-57 226.9 222 50.9
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-56 222.6 211 51.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 8.6e-56 221.1 143 75.5
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.6e-55 218.4 170 60.6
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.1e-54 216.5 209 46.4
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 8.1e-54 214.5 214 49.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-53 213.8 169 59.8
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.4e-53 213.0 160 64.4
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 9.9e-52 207.6 152 69.7
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 7.1e-50 201.4 214 44.9
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-49 200.3 128 78.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 6.0e-49 198.4 192 49.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-48 197.2 172 55.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 3.3e-47 192.6 221 41.2
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.3e-47 192.2 144 61.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 8.1e-46 188.0 146 64.4
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-45 186.8 204 45.1
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-43 180.3 167 52.7
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.2e-42 176.0 129 69.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.7e-40 170.2 167 51.5
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.7e-40 167.9 132 60.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 9.0e-37 157.9 124 61.3
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-36 157.5 134 58.2
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-35 152.5 135 55.6
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-33 146.0 115 60.9
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-30 137.1 101 62.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-23 114.4 83 72.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-22 110.2 144 41.7
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-22 108.2 92 60.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-21 107.8 76 65.8
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.4e-20 102.8 52 82.7
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-19 100.9 81 58.0
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.6e-17 94.0 52 75.0
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 7.9e-17 91.7 66 57.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.8e-14 82.4 68 58.8
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-13 80.9 107 43.0
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 5.5e-10 68.9 56 66.1
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 5.5e-10 68.9 56 66.1
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 9.4e-10 68.2 55 67.3
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 9.4e-10 68.2 98 41.8


User provided reference genes

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