Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 0.0e+00 1445.6 775 100.0
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1130.2 620 87.1
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1097.4 629 82.0
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1097.0 629 82.4
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1097.0 629 82.4
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1094.7 629 82.2
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1094.0 738 73.8
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1093.2 629 82.0
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1092.4 629 81.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1090.1 629 81.9
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1089.3 624 83.3
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1088.9 623 83.5
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1088.6 731 74.3
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1086.6 627 81.2
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1084.7 707 76.1
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1082.0 621 82.4
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1080.5 632 80.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 629 80.8
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 647 78.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 3.1e-310 1068.1 628 80.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.6e-309 1065.1 617 81.5
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.9e-307 1058.9 631 79.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.2e-306 1056.2 619 80.8
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.3e-305 1052.7 627 78.5
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 5.1e-305 1050.8 708 73.0
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.1e-305 1050.8 606 82.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.1e-304 1049.7 628 78.8
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.1e-302 1043.1 736 70.9
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.4e-302 1042.7 626 78.3
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.4e-302 1042.7 757 69.1
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.8e-302 1042.3 634 77.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.4e-302 1042.0 633 75.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.5e-301 1039.3 625 77.9
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 6.4e-300 1033.9 625 77.6
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.4e-299 1031.9 727 70.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.4e-299 1030.8 731 71.7
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 9.3e-299 1030.0 706 72.8
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.1e-298 1028.9 618 79.0
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 3.5e-298 1028.1 621 78.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 7.8e-298 1026.9 747 69.5
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.7e-297 1025.8 712 71.8
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 8.7e-297 1023.5 693 70.7
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 9.6e-296 1020.0 740 68.4
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.1e-294 1016.5 728 68.0
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 4.5e-293 1011.1 627 76.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 3.8e-292 1008.1 638 74.6
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.6e-290 1002.7 621 74.7
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 7.9e-290 1000.3 627 74.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 3.9e-289 998.0 664 70.0
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.1e-288 996.5 628 74.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.5e-288 995.3 695 68.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 3.3e-288 995.0 709 68.1
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.6e-287 992.6 618 76.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.7e-287 991.5 628 73.9
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.7e-287 991.5 628 73.9
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.7e-287 991.5 628 73.9
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.4e-286 989.6 624 74.2
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 4.0e-286 988.0 685 71.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 4.0e-286 988.0 636 73.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.9e-284 981.9 699 67.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 8.4e-284 980.3 621 73.6
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.9e-283 979.2 620 73.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.9e-283 979.2 748 67.9
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 4.2e-283 978.0 628 73.6
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 7.1e-283 977.2 731 70.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 5.1e-281 971.1 628 72.8
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.1e-281 971.1 633 74.2
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 6.7e-281 970.7 747 67.6
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 8.7e-281 970.3 628 72.8
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 5.6e-280 967.6 744 66.0
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.3e-279 966.5 630 71.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.1e-279 965.7 752 66.8
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.2e-279 964.1 744 66.0
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 6.2e-279 964.1 656 69.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.0e-276 956.8 739 67.7
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.2e-276 955.7 739 66.7
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.6e-274 949.5 676 67.8
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 4.6e-274 948.0 624 73.4
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.3e-273 946.4 659 69.5
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 8.7e-273 943.7 565 78.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.9e-272 942.6 749 64.9
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.5e-272 942.2 628 73.1
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.5e-272 942.2 628 73.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-271 939.9 621 71.8
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-271 939.9 621 71.7
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 6.3e-271 937.6 709 67.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.5e-269 932.9 676 71.4
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 4.5e-269 931.4 628 72.1
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.2e-268 929.1 713 69.0
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.5e-268 927.5 541 81.7
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 7.2e-267 924.1 573 77.1
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 3.6e-266 921.8 705 64.4
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.6e-266 921.4 629 70.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 5.7e-264 914.4 625 67.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 7.4e-264 914.1 644 67.9
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 3.7e-263 911.8 629 68.8
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 4.8e-263 911.4 608 76.5
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.6e-253 879.0 680 65.9
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.1e-248 863.6 617 68.6
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.7e-248 861.3 740 62.3
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.8e-247 858.2 627 65.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 4.4e-240 835.1 622 64.8
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-239 833.6 628 64.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-238 830.1 632 66.9
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.0e-236 823.9 629 65.5
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.6e-232 809.3 631 59.6
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.4e-232 808.9 650 60.0
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.3e-228 796.2 748 57.0
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 5.0e-228 795.0 525 74.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 4.7e-226 788.5 627 59.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 6.3e-223 778.1 667 60.9
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.2e-221 773.9 623 60.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.0e-221 773.1 555 65.9
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 7.8e-221 771.2 653 57.7
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.4e-209 733.8 436 78.0
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 5.2e-209 731.9 451 76.1
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.4e-206 721.8 627 59.0
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 8.6e-204 714.5 442 75.8
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.6e-200 703.0 628 58.3
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.4e-200 702.2 526 63.9
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.5e-195 687.2 454 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.8e-194 682.9 541 60.6
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.9e-192 674.5 627 54.9
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 2.4e-185 653.3 389 77.9
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.4e-184 649.4 443 68.6
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 2.9e-183 646.4 436 69.7
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.7e-180 637.1 436 68.1
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.4e-175 618.6 427 67.4
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.4e-174 615.5 427 66.7
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 5.6e-171 605.5 657 48.4
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.5e-157 559.7 714 42.0
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.3e-146 524.6 437 59.5
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.1e-145 520.0 446 58.7
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.7e-143 514.2 634 40.9
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 8.2e-138 495.4 663 41.6
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.4e-129 468.0 612 39.5
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-121 441.8 320 64.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.8e-116 424.5 434 50.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 4.7e-101 373.2 226 77.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 6.8e-92 342.8 187 84.5
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 4.4e-91 340.1 184 84.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 7.5e-91 339.3 187 82.4
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.0e-87 328.9 169 89.3
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 4.3e-78 297.0 184 75.0
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.4e-76 292.0 181 72.4
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.4e-76 291.2 181 72.4
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-72 278.5 182 72.5
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.8e-72 276.2 156 78.8
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.9e-66 257.7 136 85.3
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.7e-64 251.1 183 66.1
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.2e-56 225.7 137 75.9
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-56 224.9 151 68.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.2e-49 201.1 103 85.4
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 6.9e-44 183.3 113 76.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.2e-40 172.6 84 91.7
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.0e-39 169.5 111 70.3
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.8e-39 168.7 107 75.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-33 148.3 115 59.1
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.6e-32 145.6 79 82.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 2.9e-26 124.8 72 77.8
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 2.5e-25 121.7 148 45.3
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 9.4e-25 119.8 75 73.3
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 7.9e-24 116.7 85 64.7
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 6.7e-23 113.6 72 69.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.4e-14 84.3 50 72.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 5.3e-12 77.4 38 94.7
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 5.9e-11 73.9 50 66.0
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 2.1e-08 65.5 296 22.3
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 2.1e-08 65.5 43 67.4
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 6.8e-07 60.5 288 22.9
Eucgr.D01697 Eucalyptus grandis HOM05D000645 ORTHO05D000494 2.6e-06 58.5 110 32.7
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 3.4e-06 58.2 259 25.5
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 3.4e-06 58.2 303 22.4
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.4e-06 57.8 288 21.9
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 5.7e-06 57.4 61 52.5
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 7.5e-06 57.0 220 24.5
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 7.5e-06 57.0 116 24.1
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 7.5e-06 57.0 116 24.1
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.8e-06 56.6 288 21.9


User provided reference genes

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