Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 6.3e-252 873.6 439 100.0
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 2.7e-247 858.2 430 100.0
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.1e-211 740.0 439 84.1
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.6e-207 726.1 439 82.5
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 1.5e-205 719.5 437 82.2
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 6.4e-204 714.1 436 81.2
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 5.4e-203 711.1 438 82.0
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.6e-202 709.5 438 79.7
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 4.6e-202 708.0 438 80.8
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.9e-201 704.9 435 80.0
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 6.6e-201 704.1 438 79.5
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.1e-200 703.4 438 79.9
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 4.7e-199 698.0 435 79.5
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 5.2e-198 694.5 437 78.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 5.2e-198 694.5 438 80.1
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.0e-197 692.6 436 78.7
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.0e-197 692.6 437 78.7
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 2.0e-197 692.6 437 78.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 2.6e-197 692.2 438 79.0
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 4.4e-197 691.4 436 78.2
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 7.5e-197 690.6 436 78.7
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 9.9e-197 690.3 436 78.4
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 9.9e-197 690.3 435 79.1
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.2e-196 689.1 438 76.9
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 6.4e-196 687.6 437 77.1
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.9e-195 686.0 438 77.9
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 9.2e-195 683.7 438 75.3
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.6e-194 682.9 437 78.0
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 2.7e-194 682.2 436 78.0
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 7.8e-194 680.6 438 75.6
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.7e-193 679.5 466 73.8
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 3.0e-193 678.7 438 76.5
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.1e-192 676.8 438 78.3
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.3e-192 675.2 439 77.7
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.3e-192 675.2 438 76.0
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 4.3e-192 674.9 433 77.4
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 9.5e-192 673.7 438 76.9
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.4e-190 669.8 438 75.6
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.4e-190 669.8 435 74.9
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 3.1e-190 668.7 438 73.7
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 6.8e-190 667.5 438 75.6
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 8.9e-190 667.2 452 74.6
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 1.5e-189 666.4 441 75.3
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 2.0e-189 666.0 438 73.3
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 2.6e-189 665.6 461 74.2
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 7.6e-189 664.1 485 70.5
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.7e-188 662.9 439 74.0
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 8.4e-188 660.6 437 74.4
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 8.4e-188 660.6 435 73.6
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.1e-187 660.2 439 74.5
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 3.2e-187 658.7 438 74.4
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 3.2e-187 658.7 440 73.4
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 7.1e-187 657.5 438 73.3
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 7.1e-187 657.5 437 73.0
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 9.2e-187 657.1 437 74.4
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 9.2e-187 657.1 438 74.4
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.2e-186 656.8 435 73.8
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.6e-186 656.4 437 73.5
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.5e-186 655.2 439 73.3
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 4.6e-186 654.8 437 74.6
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.7e-185 652.9 437 73.9
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.7e-185 652.9 410 78.5
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 3.0e-185 652.1 437 74.6
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 3.9e-185 651.7 436 74.1
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.1e-185 651.4 438 74.0
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 8.7e-185 650.6 437 73.9
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 8.7e-185 650.6 439 73.1
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.5e-184 649.8 437 74.1
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.9e-184 649.4 436 73.9
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.5e-184 649.0 437 73.7
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 3.3e-184 648.7 437 73.9
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 4.3e-184 648.3 439 73.8
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 4.3e-184 648.3 439 72.7
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 5.6e-184 647.9 437 73.5
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 5.6e-184 647.9 437 74.8
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.6e-183 646.4 439 72.9
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 2.1e-183 646.0 438 73.1
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 4.7e-183 644.8 437 73.0
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 4.7e-183 644.8 437 74.4
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 4.7e-183 644.8 436 73.4
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 6.2e-183 644.4 437 72.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.0e-182 641.7 440 72.7
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.2e-181 640.2 436 72.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.0e-181 639.4 437 73.0
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 9.9e-181 637.1 436 72.5
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.7e-180 636.3 436 72.0
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 8.4e-180 634.0 438 71.2
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.1e-179 633.6 438 71.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 6.0e-178 627.9 440 70.5
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.3e-177 626.7 435 70.6
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.0e-177 625.5 438 71.2
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.0e-177 625.5 385 79.2
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 9.6e-176 620.5 372 81.2
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 3.1e-174 615.5 435 69.9
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.5e-173 613.2 434 69.6
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.6e-170 603.2 465 67.3
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.9e-163 579.7 436 65.6
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 4.9e-156 555.1 560 53.8
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.3e-153 547.0 461 59.9
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.8e-148 528.9 418 63.6
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.4e-142 510.4 439 56.0
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 7.2e-139 498.0 435 57.9
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 5.9e-133 478.4 442 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.8e-132 475.7 414 56.5
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.1e-123 447.6 436 54.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 4.0e-113 412.5 267 77.9
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.1e-110 404.4 263 74.1
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.6e-106 389.4 294 70.4
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 1.8e-102 377.1 259 71.8
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 8.6e-92 341.7 506 40.3
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.6e-82 310.8 366 49.5
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 3.6e-82 309.7 287 57.8
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.7e-76 290.8 171 83.0
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 4.0e-73 279.6 189 70.4
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 9.0e-65 251.9 148 80.4
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-62 244.6 295 48.5
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 7.1e-62 242.3 153 76.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-60 236.9 135 79.3
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 7.9e-53 212.2 233 49.4
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.0e-47 195.3 122 75.4
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.7e-44 182.2 156 61.5
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 7.4e-43 179.1 148 61.5
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.2e-38 163.7 294 39.1
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 6.3e-34 149.4 172 51.7
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.2e-32 145.2 198 42.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 4.6e-29 133.3 118 58.5
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 4.7e-21 106.7 72 75.0
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 6.1e-21 106.3 71 77.5
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 8.8e-20 102.4 66 78.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 8.8e-20 102.4 66 78.8
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.2e-18 97.8 62 72.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.8e-12 78.2 65 63.1
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 3.3e-11 73.9 59 62.7
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 5.7e-11 73.2 190 30.5
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.7e-08 64.3 110 36.4
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 4.5e-08 63.5 110 34.5
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.0e-07 62.4 46 65.2
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.3e-07 62.0 72 47.2
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 6.5e-07 59.7 127 30.7
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 8.5e-07 59.3 114 33.3


User provided reference genes

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