Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 1.8e-107 392.5 186 100.0
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 7.9e-79 297.4 145 97.9
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.3e-68 263.5 149 83.9
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 2.4e-67 259.2 145 82.8
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 2.4e-67 259.2 145 82.8
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-67 257.7 145 82.1
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.2e-66 256.9 147 84.4
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 2.0e-66 256.1 145 82.1
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 4.5e-66 255.0 145 82.1
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 5.9e-66 254.6 145 82.1
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 5.9e-66 254.6 145 82.1
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 5.9e-66 254.6 145 82.1
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 5.9e-66 254.6 145 82.1
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 5.9e-66 254.6 145 81.4
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-65 253.8 145 81.4
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.3e-65 253.4 165 72.7
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.3e-65 253.4 145 82.1
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 2.2e-65 252.7 157 79.0
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 6.5e-65 251.1 149 83.2
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.4e-64 250.0 154 78.6
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 2.5e-64 249.2 145 80.7
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.2e-63 246.9 145 82.1
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 4.6e-63 245.0 167 73.1
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 1.0e-62 243.8 167 73.1
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.8e-62 243.0 149 78.5
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 6.7e-62 241.1 149 75.2
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.7e-60 236.5 149 77.2
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 2.2e-60 236.1 151 73.5
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 2.2e-60 236.1 151 73.5
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 2.8e-60 235.7 149 77.2
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-60 235.7 149 77.2
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 2.8e-60 235.7 149 77.2
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 2.8e-60 235.7 149 77.2
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.8e-60 235.7 149 74.5
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-60 235.3 145 77.2
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 3.1e-59 232.3 142 81.0
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 9.1e-59 230.7 145 77.9
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.5e-58 229.9 149 75.8
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.3e-57 226.9 140 76.4
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 1.7e-57 226.5 149 72.5
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.0e-54 215.7 145 71.0
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 8.8e-54 214.2 147 72.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.0e-53 213.0 153 69.9
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.9e-48 196.4 139 70.5
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.5e-48 196.1 143 70.6
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-47 193.7 125 73.6
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 4.7e-47 191.8 147 63.3
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.8e-46 189.9 147 62.6
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 5.2e-46 188.3 150 62.0
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 5.2e-46 188.3 150 62.0
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 5.2e-46 188.3 150 62.0
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 5.2e-46 188.3 150 62.0
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 5.2e-46 188.3 150 62.0
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.4e-45 185.3 118 75.4
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 2.8e-44 182.6 150 61.3
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.7e-44 182.2 118 72.9
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.1e-43 180.6 132 68.9
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.1e-43 179.1 111 78.4
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.2e-42 177.2 119 69.7
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 3.5e-42 175.6 106 80.2
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 7.7e-42 174.5 90 93.3
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-40 169.9 91 89.0
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-40 169.9 91 89.0
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-40 169.9 91 89.0
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-40 169.9 91 89.0
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.2e-40 169.1 145 61.4
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.2e-40 168.7 142 64.1
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 1.2e-39 167.2 90 90.0
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.0e-38 164.1 142 62.0
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 1.4e-38 163.7 109 71.6
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 1.5e-37 160.2 110 74.5
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 1.3e-36 157.1 108 72.2
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.3e-36 157.1 103 74.8
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.1e-35 152.1 91 81.3
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.2e-34 150.6 89 82.0
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.6e-34 150.2 127 59.1
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 2.7e-34 149.4 90 80.0
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 2.2e-33 146.4 130 59.2
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 2.2e-33 146.4 83 85.5
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.1e-32 144.1 95 70.5
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.5e-32 141.7 95 69.5
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.5e-32 141.7 95 69.5
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 5.5e-32 141.7 77 87.0
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.2e-31 140.6 75 89.3
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 1.6e-31 140.2 121 61.2
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 2.1e-31 139.8 86 76.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.7e-31 139.4 78 84.6
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.6e-31 139.0 77 84.4
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 6.1e-31 138.3 77 84.4
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 6.1e-31 138.3 86 69.8
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.4e-30 137.1 75 84.0
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 1.8e-30 136.7 73 89.0
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.8e-30 136.7 73 87.7
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.8e-30 134.4 73 84.9
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.6e-29 132.9 71 85.9
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 4.4e-29 132.1 75 80.0
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 3.7e-28 129.0 84 76.2
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 3.7e-28 129.0 75 81.3
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 6.3e-28 128.3 68 91.2
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 5.4e-27 125.2 71 80.3
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 5.0e-25 118.6 98 61.2
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 3.3e-24 115.9 62 88.7
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 1.2e-23 114.0 73 75.3
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-21 107.5 145 45.5
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-21 107.5 56 89.3
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 2.6e-21 106.3 66 74.2
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.3e-20 104.0 71 67.6
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 2.4e-19 99.8 64 73.4
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.2e-18 97.4 64 75.0
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.9e-17 92.4 74 62.2
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 3.3e-16 89.4 54 75.9
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 5.6e-16 88.6 90 56.7
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.0e-14 84.3 71 59.2
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.4e-14 84.0 46 84.8
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.8e-13 77.8 48 79.2
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-12 76.6 50 64.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.2e-10 70.9 37 89.2
Lalb_Chr06g0173001 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-10 70.5 54 66.7
Aa31csc39G140 Aethionema arabicum HOM05D000216 ORTHO05D000634 2.7e-10 69.7 102 40.2
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 4.6e-10 68.9 67 58.2
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.0e-09 66.2 33 97.0
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.9e-09 65.9 41 73.2
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.9e-09 65.9 39 79.5
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 6.6e-09 65.1 49 63.3
Mapoly0087s0067 Marchantia polymorpha HOM05D000216 ORTHO05D000634 5.6e-08 62.0 52 57.7


User provided reference genes

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