Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2770 Acer truncatum HOM05D000548 ORTHO05D001575 1.1e-66 256.5 133 100.0
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.4e-16 90.1 145 45.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.1e-13 80.5 96 49.0
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.1e-13 78.6 96 49.0
AUR62043450 Chenopodium quinoa HOM05D000548 ORTHO05D000987 7.0e-13 77.8 59 62.7
Peaxi162Scf00386g00919 Petunia axillaris HOM05D000548 ORTHO05D000987 2.0e-12 76.3 112 45.5
CSS0009219 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 1.6e-09 66.6 63 57.1
Nitab4.5_0000829g0100 Nicotiana tabacum HOM05D000548 ORTHO05D000987 1.6e-09 66.6 49 63.3
Peaxi162Scf00033g01411 Petunia axillaris HOM05D000548 ORTHO05D000987 1.6e-09 66.6 58 55.2
Nitab4.5_0002986g0020 Nicotiana tabacum HOM05D000548 ORTHO05D000987 6.1e-09 64.7 47 63.8
Actinidia00688 Actinidia chinensis HOM05D000548 ORTHO05D000987 1.0e-08 63.9 27 88.9
AUR62035360 Chenopodium quinoa HOM05D000548 ORTHO05D000987 1.8e-08 63.2 27 88.9
MD16G1174300 Malus domestica HOM05D000548 ORTHO05D000987 1.8e-08 63.2 43 69.8
TAR633G2100 Trochodendron aralioides HOM05D003260 ORTHO05D003651 2.3e-08 62.8 36 72.2
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.1e-08 62.4 44 68.2
Haze_01254 Corylus avellana HOM05D000548 ORTHO05D000987 6.8e-08 61.2 44 65.9
Lsat_1_v5_gn_5_50740 Lactuca sativa HOM05D000548 ORTHO05D000987 8.9e-08 60.8 42 69.0
Lj1g0018543 Lotus japonicus HOM05D000548 ORTHO05D000987 1.2e-07 60.5 42 66.7
Atru.chr6.1303 Acer truncatum HOM05D001661 ORTHO05D001575 1.5e-07 60.1 34 91.2
Lsat_1_v5_gn_3_24820 Lactuca sativa HOM05D000548 ORTHO05D000987 1.5e-07 60.1 45 62.2
Rhsim13G0016300 Rhododendron simsii HOM05D000548 ORTHO05D000987 1.5e-07 60.1 27 85.2
RcHm_v2.0_Chr4g0421291 Rosa chinensis HOM05D000548 ORTHO05D000987 1.5e-07 60.1 42 69.0
VMungo1215G3376 Vigna mungo HOM05D000548 ORTHO05D000987 1.5e-07 60.1 42 69.0
Cc03_g02250 Coffea canephora HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 66.7
Duzib151G0551 Durio zibethinus HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 69.0
PSO210G6506 Papaver somniferum HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 66.7
Phvul.006G162000 Phaseolus vulgaris HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 69.0
Psat1g187400 Pisum sativum HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 69.0
Prupe.1G141000 Prunus persica HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 66.7
QL06p007577 Quercus lobata HOM05D000548 ORTHO05D000987 2.0e-07 59.7 42 66.7
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 2.6e-07 59.3 42 66.7
Ca_00567_v3 Cicer arietinum L. HOM05D000548 ORTHO05D000987 2.6e-07 59.3 42 66.7
COL.COLO4_13919 Corchorus olitorius HOM05D000548 ORTHO05D000987 2.6e-07 59.3 42 66.7
Glyma.15G097300 Glycine max HOM05D000548 ORTHO05D000987 2.6e-07 59.3 42 66.7
Lalb_Chr12g0196471 Lupinus albus HOM05D000548 ORTHO05D000987 2.6e-07 59.3 42 66.7
Medtr2g020040 Medicago truncatula HOM05D000548 ORTHO05D000987 2.6e-07 59.3 42 66.7
Atru.chr4.2767 Acer truncatum HOM05D000548 ORTHO05D000987 3.4e-07 58.9 42 66.7
VMungo0540G1656 Vigna mungo HOM05D000548 ORTHO05D000987 3.4e-07 58.9 42 69.0
Atru.chr4.2762 Acer truncatum HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 66.7
arahy.Tifrunner.gnm1.ann1.JX4TU4 Arachis hypogaea HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 64.3
arahy.Tifrunner.gnm1.ann1.WY5R7K Arachis hypogaea HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 64.3
Glyma.07G250900 Glycine max HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 66.7
Gohir.A10G101055 Gossypium hirsutum HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 66.7
Gohir.D10G167200 Gossypium hirsutum HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 66.7
Gorai.011G186700 Gossypium raimondii HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 66.7
MD13G1172900 Malus domestica HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 69.0
Phvul.003G101500 Phaseolus vulgaris HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 64.3
Sc19g0004970 Simmondsia chinensis HOM05D000548 ORTHO05D000987 4.4e-07 58.5 42 64.3
Glyma.13G215600 Glycine max HOM05D000548 ORTHO05D000987 5.8e-07 58.2 42 69.0
MBI04_g27071_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D000987 5.8e-07 58.2 42 69.0
Hund20590 Selenicereus undatus HOM05D000548 ORTHO05D000987 5.8e-07 58.2 33 75.8
SGA_v2.0_scaffold57G20204 Striga asiatica HOM05D000548 ORTHO05D000987 5.8e-07 58.2 42 64.3
TWI73G0109 Tripterygium wilfordii HOM05D000548 ORTHO05D000987 5.8e-07 58.2 42 66.7
CiPaw.02G085900 Carya illinoinensis HOM05D000548 ORTHO05D000987 7.5e-07 57.8 42 64.3
Dinv33003 Davidia involucrata HOM05D000548 ORTHO05D000987 7.5e-07 57.8 25 88.0
FvH4_4g17350 Fragaria vesca HOM05D000548 ORTHO05D000987 7.5e-07 57.8 42 66.7
FAN12G2397 Fragaria x ananassa HOM05D000548 ORTHO05D000987 7.5e-07 57.8 42 66.7
FAN22G1179 Fragaria x ananassa HOM05D000548 ORTHO05D000987 7.5e-07 57.8 42 66.7
Hma1.2p1_0399F.1_g144120 Hydrangea macrophylla HOM05D000548 ORTHO05D000987 7.5e-07 57.8 25 88.0
Lalb_Chr18g0055691 Lupinus albus HOM05D000548 ORTHO05D000987 7.5e-07 57.8 42 64.3
Nitab4.5_0012299g0020 Nicotiana tabacum HOM05D000548 ORTHO05D000987 7.5e-07 57.8 25 88.0
Peaxi162Scf01039g00019 Petunia axillaris HOM05D000548 ORTHO05D000987 7.5e-07 57.8 25 88.0
TPR.G1516 Trifolium pratense HOM05D000548 ORTHO05D000987 7.5e-07 57.8 42 64.3
Dinv38318 Davidia involucrata HOM05D000548 ORTHO05D000987 9.8e-07 57.4 42 64.3
Nitab4.5_0001459g0130 Nicotiana tabacum HOM05D000548 ORTHO05D000987 9.8e-07 57.4 147 33.3
Oeu057562.1 Olea europaea HOM05D000548 ORTHO05D000987 9.8e-07 57.4 44 61.4
Sed0009020 Sechium edule HOM05D000548 ORTHO05D000987 9.8e-07 57.4 42 61.9
Sed0020744 Sechium edule HOM05D000548 ORTHO05D000987 9.8e-07 57.4 42 61.9
Thecc.04G278700 Theobroma cacao HOM05D000548 ORTHO05D000987 9.8e-07 57.4 42 66.7
Gohir.A08G072900 Gossypium hirsutum HOM05D000548 ORTHO05D000987 1.3e-06 57.0 28 75.0
PSO832G0860 Papaver somniferum HOM05D000548 ORTHO05D000987 1.3e-06 57.0 42 64.3
Rhsim04G0217300 Rhododendron simsii HOM05D000548 ORTHO05D000987 1.3e-06 57.0 42 64.3
vmacro08191 Vaccinium macrocarpon HOM05D000548 ORTHO05D000987 1.3e-06 57.0 42 64.3
GSVIVG01017793001 Vitis vinifera HOM05D000548 ORTHO05D000987 1.3e-06 57.0 33 75.8
CiPaw.01G152400 Carya illinoinensis HOM05D000548 ORTHO05D000987 1.7e-06 56.6 42 64.3
SGA_v2.0_scaffold1G00190 Striga asiatica HOM05D000548 ORTHO05D000987 1.7e-06 56.6 29 75.9
unitig_748.g8373 Utricularia gibba HOM05D000548 ORTHO05D000987 1.7e-06 56.6 33 75.8
vmacro02500 Vaccinium macrocarpon HOM05D000548 ORTHO05D000987 1.7e-06 56.6 27 77.8
GSVIVG01010990001 Vitis vinifera HOM05D000548 ORTHO05D000987 1.7e-06 56.6 25 88.0
CAN.G1209.33 Capsicum annuum HOM05D000548 ORTHO05D000987 2.2e-06 56.2 25 84.0
Solyc06g054540.3 Solanum lycopersicum HOM05D000548 ORTHO05D000987 2.2e-06 56.2 42 61.9
Solyc06g084510.4 Solanum lycopersicum HOM05D000548 ORTHO05D000987 2.2e-06 56.2 25 84.0
Sopen06g019610 Solanum pennellii HOM05D000548 ORTHO05D000987 2.2e-06 56.2 42 61.9
Sopen06g035890 Solanum pennellii HOM05D000548 ORTHO05D000987 2.2e-06 56.2 25 84.0
PGSC0003DMG400024044 Solanum tuberosum HOM05D000548 ORTHO05D000987 2.2e-06 56.2 25 84.0
PGSC0003DMG400030762 Solanum tuberosum HOM05D000548 ORTHO05D000987 2.2e-06 56.2 42 61.9
EL10Ac3g06568 Beta vulgaris HOM05D000548 ORTHO05D000987 2.9e-06 55.8 33 69.7
Cc01_g20350 Coffea canephora HOM05D000548 ORTHO05D000987 2.9e-06 55.8 25 88.0
DCAR_002449 Daucus carota HOM05D000548 ORTHO05D000987 2.9e-06 55.8 42 61.9
Glyma.17G023400 Glycine max HOM05D000548 ORTHO05D000987 2.9e-06 55.8 42 61.9
Manes.03G191600 Manihot esculenta HOM05D000548 ORTHO05D000987 2.9e-06 55.8 42 64.3
Nitab4.5_0001054g0030 Nicotiana tabacum HOM05D000548 ORTHO05D000987 2.9e-06 55.8 42 61.9
Potri.008G205400 Populus trichocarpa HOM05D000548 ORTHO05D000987 2.9e-06 55.8 42 64.3
RcHm_v2.0_Chr6g0292841 Rosa chinensis HOM05D000548 ORTHO05D000987 2.9e-06 55.8 25 80.0
Sabra08G0156500 Salix brachista HOM05D000548 ORTHO05D000987 2.9e-06 55.8 42 64.3
CSS0002637 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 3.7e-06 55.5 42 61.9
Cpa.g.sc16.126 Carica papaya HOM05D000548 ORTHO05D000987 3.7e-06 55.5 41 65.9
ECA247G3289 Erigeron canadensis HOM05D000548 ORTHO05D000987 3.7e-06 55.5 26 80.8
Hma1.2p1_0823F.1_g224710 Hydrangea macrophylla HOM05D000548 ORTHO05D000987 3.7e-06 55.5 42 61.9
Oeu044783.1 Olea europaea HOM05D000548 ORTHO05D000987 3.7e-06 55.5 33 72.7
PSO210G4862 Papaver somniferum HOM05D000548 ORTHO05D000987 3.7e-06 55.5 42 61.9
SalBow2G0530 Salvia bowleyana HOM05D000548 ORTHO05D000987 3.7e-06 55.5 42 61.9
Aqoxy5G00648 Aquilegia oxysepala HOM05D000548 ORTHO05D000987 4.9e-06 55.1 42 61.9
CSS0000790 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 4.9e-06 55.1 42 61.9
CSS0016923 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 4.9e-06 55.1 42 61.9
CANSAT78G0879 Cannabis sativa HOM05D000548 ORTHO05D000987 4.9e-06 55.1 42 64.3
Lsat_1_v5_gn_9_4921 Lactuca sativa HOM05D000548 ORTHO05D000987 4.9e-06 55.1 26 76.9
LjContig00389g0001246 Lotus japonicus HOM05D000548 ORTHO05D000987 4.9e-06 55.1 42 61.9
Dinv44419 Davidia involucrata HOM05D000548 ORTHO05D000987 6.4e-06 54.7 41 63.4
Nitab4.5_0002093g0260 Nicotiana tabacum HOM05D000548 ORTHO05D000987 6.4e-06 54.7 25 84.0
CAN.G256.10 Capsicum annuum HOM05D000548 ORTHO05D000987 8.3e-06 54.3 42 59.5
Oeu063549.1 Olea europaea HOM05D001661 ORTHO05D001575 8.3e-06 54.3 35 77.1
PSO170G6272 Papaver somniferum HOM05D000548 ORTHO05D000987 8.3e-06 54.3 42 59.5
THA.LOC104827119 Tarenaya hassleriana HOM05D000548 ORTHO05D000987 8.3e-06 54.3 42 61.9


User provided reference genes

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