Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.265 Acer truncatum HOM05D003382 ORTHO05D003930 1.0e-108 396.7 199 100.0
Ciclev10025401m.g Citrus clementina HOM05D003382 ORTHO05D003930 6.6e-92 340.9 199 83.4
QL06p040205 Quercus lobata HOM05D003382 ORTHO05D003930 2.9e-87 325.5 199 76.9
Potri.007G047500 Populus trichocarpa HOM05D003382 ORTHO05D003930 1.0e-84 317.0 199 79.9
Potri.005G141500 Populus trichocarpa HOM05D003382 ORTHO05D003930 3.9e-84 315.1 199 76.9
Cfa004049 Carpinus fangiana HOM05D003382 ORTHO05D003930 1.5e-83 313.2 197 73.1
Manes.13G119600 Manihot esculenta HOM05D003382 ORTHO05D003930 5.6e-83 311.2 199 74.9
MD02G1177600 Malus domestica HOM05D003382 ORTHO05D003930 9.6e-83 310.5 200 75.5
MD15G1287400 Malus domestica HOM05D003382 ORTHO05D003930 8.1e-82 307.4 200 73.0
Sabra07G0042400 Salix brachista HOM05D003382 ORTHO05D003930 6.9e-81 304.3 199 74.9
FAN19G0190 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.2e-80 303.5 198 73.2
FAN28G1977 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.2e-80 303.5 198 73.2
FAN23G3096 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.5e-80 303.1 198 73.2
FAN28G2539 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.5e-80 303.1 198 72.7
FvH4_1g16500 Fragaria vesca HOM05D003382 ORTHO05D003930 4.5e-80 301.6 198 72.7
RcHm_v2.0_Chr2g0106411 Rosa chinensis HOM05D003382 ORTHO05D003930 5.8e-80 301.2 199 72.9
TWI73G0794 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 5.8e-80 301.2 199 71.9
CiPaw.01G014100 Carya illinoinensis HOM05D003382 ORTHO05D003930 1.3e-79 300.1 200 74.0
FAN26G1389 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.3e-79 300.1 198 72.7
TAR376G0471 Trochodendron aralioides HOM05D003382 ORTHO05D003930 2.2e-79 299.3 198 71.2
TAR628G1387 Trochodendron aralioides HOM05D003382 ORTHO05D003930 2.2e-79 299.3 198 72.2
TWI09G1091 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 2.9e-79 298.9 199 73.4
Duzib264G1059 Durio zibethinus HOM05D003382 ORTHO05D003930 3.8e-79 298.5 204 69.6
Prupe.6G230500 Prunus persica HOM05D003382 ORTHO05D003930 4.9e-79 298.1 200 73.0
CiPaw.02G007100 Carya illinoinensis HOM05D003382 ORTHO05D003930 1.1e-78 297.0 200 71.0
Manes.12G107600 Manihot esculenta HOM05D003382 ORTHO05D003930 1.1e-78 297.0 199 71.4
COL.COLO4_11466 Corchorus olitorius HOM05D003382 ORTHO05D003930 5.5e-78 294.7 201 71.1
GSVIVG01022064001 Vitis vinifera HOM05D003382 ORTHO05D003930 5.5e-78 294.7 197 71.1
PGR004G0325 Punica granatum HOM05D003382 ORTHO05D003930 7.1e-78 294.3 200 72.0
CSS0022388 Camellia sinensis var. sinensis HOM05D003382 ORTHO05D003930 1.6e-77 293.1 200 69.5
Eucgr.I00880 Eucalyptus grandis HOM05D003382 ORTHO05D003930 2.1e-77 292.7 196 71.4
Gorai.007G216800 Gossypium raimondii HOM05D003382 ORTHO05D003930 6.0e-77 291.2 199 69.8
Aqoxy5G01170 Aquilegia oxysepala HOM05D003382 ORTHO05D003930 7.9e-77 290.8 201 70.6
Gohir.A11G196300 Gossypium hirsutum HOM05D003382 ORTHO05D003930 1.0e-76 290.4 199 70.4
Glyma.01G189200 Glycine max HOM05D003382 ORTHO05D003930 5.1e-76 288.1 200 70.5
Ca_24746_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 6.7e-76 287.7 198 69.2
Glyma.11G053000 Glycine max HOM05D003382 ORTHO05D003930 8.7e-76 287.3 200 69.0
Thecc.01G062100 Theobroma cacao HOM05D003382 ORTHO05D003930 8.7e-76 287.3 171 76.6
CsaV3_6G043470 Cucumis sativus L. HOM05D003382 ORTHO05D003930 1.1e-75 287.0 198 69.7
CANSAT25G0401 Cannabis sativa HOM05D003382 ORTHO05D003930 3.3e-75 285.4 204 70.1
Hma1.2p1_2648F.1_g326090 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 4.3e-75 285.0 199 72.4
ClCG01G016990 Citrullus lanatus HOM05D003382 ORTHO05D003930 7.4e-75 284.3 199 69.8
Dinv26854 Davidia involucrata HOM05D003382 ORTHO05D003930 7.4e-75 284.3 187 76.5
VMungo1215G2685 Vigna mungo HOM05D003382 ORTHO05D003930 9.6e-75 283.9 200 69.5
Duzib147G0315 Durio zibethinus HOM05D003382 ORTHO05D003930 1.3e-74 283.5 171 74.9
Glyma.16G095800 Glycine max HOM05D003382 ORTHO05D003930 2.8e-74 282.3 200 70.5
Phvul.002G016000 Phaseolus vulgaris HOM05D003382 ORTHO05D003930 2.8e-74 282.3 201 68.7
Hma1.2p1_0017F.1_g011810 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 4.8e-74 281.6 201 66.7
Lj4g0013634 Lotus japonicus HOM05D003382 ORTHO05D003930 6.3e-74 281.2 201 67.7
Dinv30023 Davidia involucrata HOM05D003382 ORTHO05D003930 1.1e-73 280.4 200 72.0
Gohir.D03G025200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 2.4e-73 279.3 171 74.9
Lj2g0012816 Lotus japonicus HOM05D003382 ORTHO05D003930 2.4e-73 279.3 199 68.3
Gorai.003G026800 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.1e-73 278.9 171 74.9
Duzib187G0504 Durio zibethinus HOM05D003382 ORTHO05D003930 4.1e-73 278.5 171 74.3
Lj4A155G86 Lonicera japonica HOM05D003382 ORTHO05D003930 4.1e-73 278.5 198 67.7
Lalb_Chr16g0378671 Lupinus albus HOM05D003382 ORTHO05D003930 4.1e-73 278.5 199 67.3
vmacro17969 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 6.9e-73 277.7 202 71.8
Glyma.17G168400 Glycine max HOM05D003382 ORTHO05D003930 9.0e-73 277.3 213 67.6
Gohir.A02G155500 Gossypium hirsutum HOM05D003382 ORTHO05D003930 1.2e-72 276.9 171 74.3
Sed0013280 Sechium edule HOM05D003382 ORTHO05D003930 1.2e-72 276.9 199 67.8
THA.LOC104807598 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 2.0e-72 276.2 196 66.3
Psat0s1867g0120 Pisum sativum HOM05D003382 ORTHO05D003930 3.4e-72 275.4 199 67.3
Rhsim08G0098200 Rhododendron simsii HOM05D003382 ORTHO05D003930 3.4e-72 275.4 201 66.7
arahy.Tifrunner.gnm1.ann1.S4MMCZ Arachis hypogaea HOM05D003382 ORTHO05D003930 5.9e-72 274.6 205 65.9
TPR.G26871 Trifolium pratense HOM05D003382 ORTHO05D003930 1.0e-71 273.9 201 70.6
arahy.Tifrunner.gnm1.ann1.27CBEW Arachis hypogaea HOM05D003382 ORTHO05D003930 2.2e-71 272.7 204 64.7
Nitab4.5_0002214g0040 Nicotiana tabacum HOM05D003382 ORTHO05D003930 2.9e-71 272.3 204 66.2
Nitab4.5_0002465g0060 Nicotiana tabacum HOM05D003382 ORTHO05D003930 2.9e-71 272.3 204 66.2
Lalb_Chr09g0323331 Lupinus albus HOM05D003382 ORTHO05D003930 5.0e-71 271.6 204 64.2
Sed0001836 Sechium edule HOM05D003382 ORTHO05D003930 5.0e-71 271.6 198 69.2
Gorai.004G051000 Gossypium raimondii HOM05D003382 ORTHO05D003930 2.5e-70 269.2 204 64.7
AL7G13650 Arabidopsis lyrata HOM05D003382 ORTHO05D003930 3.2e-70 268.9 214 63.6
AUR62003925 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.2e-70 268.9 199 62.8
DCAR_025752 Daucus carota HOM05D003382 ORTHO05D003930 3.2e-70 268.9 199 63.3
MELO3C007577.2 Cucumis melo HOM05D003382 ORTHO05D003930 4.2e-70 268.5 228 60.1
Solyc11g011850.2 Solanum lycopersicum HOM05D003382 ORTHO05D003930 4.2e-70 268.5 203 66.5
Sopen11g006680 Solanum pennellii HOM05D003382 ORTHO05D003930 4.2e-70 268.5 203 66.5
PGSC0003DMG400013327 Solanum tuberosum HOM05D003382 ORTHO05D003930 4.2e-70 268.5 204 66.7
Peaxi162Scf00078g01420 Petunia axillaris HOM05D003382 ORTHO05D003930 5.5e-70 268.1 204 66.2
AUR62038239 Chenopodium quinoa HOM05D003382 ORTHO05D003930 7.2e-70 267.7 199 62.3
Psat2g028760 Pisum sativum HOM05D003382 ORTHO05D003930 7.2e-70 267.7 200 66.0
Cc07_g06350 Coffea canephora HOM05D003382 ORTHO05D003930 4.6e-69 265.0 202 63.9
Gorai.004G051100 Gossypium raimondii HOM05D003382 ORTHO05D003930 4.6e-69 265.0 199 66.3
Medtr4g094912 Medicago truncatula HOM05D003382 ORTHO05D003930 6.1e-69 264.6 197 62.9
EL10Ac6g15703 Beta vulgaris HOM05D003382 ORTHO05D003930 7.9e-69 264.2 207 62.8
AT4G36890 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 1.0e-68 263.8 216 62.0
Medtr5g016600 Medicago truncatula HOM05D003382 ORTHO05D003930 1.3e-68 263.5 200 69.0
THA.LOC104819856 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 1.8e-68 263.1 201 63.2
VMungo0251G2741 Vigna mungo HOM05D003382 ORTHO05D003930 1.8e-68 263.1 200 67.0
Carub.0007s0306 Capsella rubella HOM05D003382 ORTHO05D003930 3.0e-68 262.3 211 61.1
Ca_22129_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 5.1e-68 261.5 172 68.6
Lalb_Chr05g0213401 Lupinus albus HOM05D003382 ORTHO05D003930 5.1e-68 261.5 199 67.8
TPR.G14589 Trifolium pratense HOM05D003382 ORTHO05D003930 6.7e-68 261.2 202 63.9
PSO541G0593 Papaver somniferum HOM05D003382 ORTHO05D003930 1.1e-67 260.4 191 66.0
PSO675G2844 Papaver somniferum HOM05D003382 ORTHO05D003930 1.1e-67 260.4 191 66.0
TAR625G0350 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.5e-67 260.0 165 73.9
CAN.G222.166 Capsicum annuum HOM05D003382 ORTHO05D003930 5.7e-67 258.1 194 66.0
HanXRQChr14g0460431 Helianthus annuus HOM05D003382 ORTHO05D003930 5.7e-67 258.1 200 60.0
Sp7g34880 Schrenkiella parvula HOM05D003382 ORTHO05D003930 9.7e-67 257.3 216 60.6
Hund16361 Selenicereus undatus HOM05D003382 ORTHO05D003930 9.7e-67 257.3 210 60.5
SGA_v2.0_scaffold15G07357 Striga asiatica HOM05D003382 ORTHO05D003930 2.2e-66 256.1 207 60.4
Oeu013240.1 Olea europaea HOM05D003382 ORTHO05D003930 3.7e-66 255.4 200 61.0
HanXRQChr15g0491931 Helianthus annuus HOM05D003382 ORTHO05D003930 4.8e-66 255.0 199 59.8
Thhalv10024924m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 1.1e-65 253.8 150 76.0
Rhsim10G0113400 Rhododendron simsii HOM05D003382 ORTHO05D003930 1.4e-65 253.4 191 63.9
Gohir.D11G202200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 9.1e-65 250.8 142 76.8
BcaNung02528 Brassica carinata HOM05D003382 ORTHO05D003930 1.2e-64 250.4 147 75.5
A01p01740 Brassica napus HOM05D003382 ORTHO05D003930 1.2e-64 250.4 147 75.5
C01p01910 Brassica napus HOM05D003382 ORTHO05D003930 1.2e-64 250.4 147 75.5
BraA01t00166Z Brassica rapa HOM05D003382 ORTHO05D003930 1.2e-64 250.4 147 75.5
BolC1t00183H Brassica oleracea HOM05D003382 ORTHO05D003930 1.5e-64 250.0 147 74.8
Migut.H00405 Erythranthe guttata HOM05D003382 ORTHO05D003930 1.5e-64 250.0 200 59.0
Lj7A75T29 Lonicera japonica HOM05D003382 ORTHO05D003930 2.0e-64 249.6 201 61.2
PSO170G3452 Papaver somniferum HOM05D003382 ORTHO05D003930 3.4e-64 248.8 154 69.5
Oeu014792.2 Olea europaea HOM05D003382 ORTHO05D003930 5.9e-64 248.1 246 52.4
Sc03g0001810 Simmondsia chinensis HOM05D003382 ORTHO05D003930 5.9e-64 248.1 174 66.7
CDE01G0400 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 1.7e-63 246.5 172 64.5
THA.LOC104827351 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 2.2e-63 246.1 199 59.8
PSO210G2217 Papaver somniferum HOM05D003382 ORTHO05D003930 2.9e-63 245.7 154 69.5
AT5G67230 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 1.9e-62 243.0 196 61.2
MSTRG.3440 Avicennia marina HOM05D003382 ORTHO05D003930 2.5e-62 242.7 199 61.8
ATR0762G014 Amborella trichopoda HOM05D003382 ORTHO05D003930 4.2e-62 241.9 199 58.3
Carub.0008s2728 Capsella rubella HOM05D003382 ORTHO05D003930 4.2e-62 241.9 195 60.5
MSTRG.15375 Avicennia marina HOM05D003382 ORTHO05D003930 9.4e-62 240.7 200 59.0
Migut.L00178 Erythranthe guttata HOM05D003382 ORTHO05D003930 2.7e-61 239.2 200 59.0
Sc07g0000690 Simmondsia chinensis HOM05D003382 ORTHO05D003930 6.1e-61 238.0 172 64.0
Zm00001eb273460 Zea mays HOM05D003382 ORTHO05D003930 7.9e-61 237.7 148 70.3
Lsat_1_v5_gn_2_85701 Lactuca sativa HOM05D003382 ORTHO05D003930 1.8e-60 236.5 188 58.5
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 1.8e-60 236.5 164 67.1
Aa31LG6G14090 Aethionema arabicum HOM05D003382 ORTHO05D003930 2.3e-60 236.1 148 68.9
DCAR_021478 Daucus carota HOM05D003382 ORTHO05D003930 3.0e-60 235.7 195 62.6
Actinidia03805 Actinidia chinensis HOM05D003382 ORTHO05D003930 3.9e-60 235.3 138 79.7
Sp2g29440 Schrenkiella parvula HOM05D003382 ORTHO05D003930 5.1e-60 235.0 188 60.1
TAR381G1333 Trochodendron aralioides HOM05D003382 ORTHO05D003930 5.1e-60 235.0 167 68.3
CDE02G3038 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 2.0e-59 233.0 172 61.6
Thhalv10004084m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 2.0e-59 233.0 187 60.4
Aa31LG1G15760 Aethionema arabicum HOM05D003382 ORTHO05D003930 2.6e-59 232.6 151 68.9
Zm00001eb225770 Zea mays HOM05D003382 ORTHO05D003930 2.6e-59 232.6 169 62.7
Lsat_1_v5_gn_4_164401 Lactuca sativa HOM05D003382 ORTHO05D003930 4.4e-59 231.9 140 70.0
Cpa.g.sc55.103 Carica papaya HOM05D003382 ORTHO05D003930 4.8e-58 228.4 119 86.6
unitig_744.g24374 Utricularia gibba HOM05D003382 ORTHO05D003930 8.2e-58 227.6 178 60.1
BcaB02g09942 Brassica carinata HOM05D003382 ORTHO05D003930 1.4e-57 226.9 173 61.8
unitig_21.g20471 Utricularia gibba HOM05D003382 ORTHO05D003930 1.4e-57 226.9 182 56.6
A07p16740 Brassica napus HOM05D003382 ORTHO05D003930 3.1e-57 225.7 173 63.0
BraA07t29399Z Brassica rapa HOM05D003382 ORTHO05D003930 3.1e-57 225.7 173 63.0
ECA232G1178 Erigeron canadensis HOM05D003382 ORTHO05D003930 1.2e-56 223.8 178 59.6
CARHR280400 Cardamine hirsuta HOM05D003382 ORTHO05D003930 2.6e-56 222.6 188 56.9
Sabra05G0112900 Salix brachista HOM05D003382 ORTHO05D003930 2.6e-56 222.6 120 84.2
ECA238G0958 Erigeron canadensis HOM05D003382 ORTHO05D003930 7.7e-56 221.1 154 65.6
HanXRQChr01g0030391 Helianthus annuus HOM05D003382 ORTHO05D003930 7.7e-56 221.1 165 61.2
Haze_15362 Corylus avellana HOM05D003382 ORTHO05D003930 1.7e-55 219.9 121 81.8
SEGI_35989 Sequoiadendron giganteum HOM05D003382 ORTHO05D003930 1.7e-55 219.9 197 57.9
C07p24470 Brassica napus HOM05D003382 ORTHO05D003930 2.2e-55 219.5 194 58.2
BolC7t42967H Brassica oleracea HOM05D003382 ORTHO05D003930 2.2e-55 219.5 194 58.2
BcaC06g34805 Brassica carinata HOM05D003382 ORTHO05D003930 1.1e-54 217.2 195 56.9
vmacro05261 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 2.3e-52 209.5 263 44.9
Actinidia16465 Actinidia chinensis HOM05D003382 ORTHO05D003930 6.7e-52 208.0 159 68.6
Eucgr.H02219 Eucalyptus grandis HOM05D003382 ORTHO05D003930 4.4e-51 205.3 190 50.0
Sopen00g006600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-48 197.2 119 75.6
SGA_v2.0_scaffold143G35795 Striga asiatica HOM05D003382 ORTHO05D003930 2.0e-48 196.4 123 69.9
Oeu009828.1 Olea europaea HOM05D003382 ORTHO05D003930 7.7e-48 194.5 119 73.1
Lj7A81T14 Lonicera japonica HOM05D003382 ORTHO05D003930 1.5e-46 190.3 201 51.7
Zm00001eb098600 Zea mays HOM05D003382 ORTHO05D003930 8.0e-45 184.5 121 67.8
HanXRQChr01g0004101 Helianthus annuus HOM05D003382 ORTHO05D003930 1.0e-44 184.1 126 63.5
AagrBONN_evm.TU.Sc2ySwM_369.389 Anthoceros agrestis HOM05D003382 ORTHO05D003930 6.8e-36 154.8 140 51.4
Mapoly0004s0253 Marchantia polymorpha HOM05D003382 ORTHO05D003930 5.7e-35 151.8 171 45.6
Sed0025631 Sechium edule HOM05D003382 ORTHO05D003930 3.1e-33 146.0 198 49.5
SHI34083 Sapria himalayana HOM05D003382 ORTHO05D003930 1.3e-31 140.6 120 55.0
SMO172G0036 Selaginella moellendorffii HOM05D003382 ORTHO05D003930 1.9e-30 136.7 167 42.5
Pp3c15_16210 Physcomitrium patens HOM05D003382 ORTHO05D003930 9.5e-30 134.4 203 38.4
Pp3c9_16190 Physcomitrium patens HOM05D003382 ORTHO05D003930 7.0e-25 118.2 146 40.4
Dinv06373 Davidia involucrata HOM05D003382 ORTHO05D003930 1.2e-19 100.9 55 80.0
Zm00001eb068390 Zea mays HOM05D003382 ORTHO05D003930 2.6e-19 99.8 142 35.2
Haze_15361 Corylus avellana HOM05D003382 ORTHO05D003930 1.8e-17 93.6 76 57.9
Zm00001eb432200 Zea mays HOM05D003382 ORTHO05D003930 4.1e-17 92.4 142 35.2
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 7.8e-16 88.2 54 68.5
ECA246G4334 Erigeron canadensis HOM05D003382 ORTHO05D003930 6.6e-15 85.1 114 43.0
ECA246G5087 Erigeron canadensis HOM05D003382 ORTHO05D003930 2.8e-13 79.7 114 42.1
Migut.C00421 Erythranthe guttata HOM05D003382 ORTHO05D003930 1.1e-12 77.8 62 56.5
Hma1.2p1_3474F.1_g336290 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 4.0e-12 75.9 78 57.7
Pp3c18_10000 Physcomitrium patens HOM05D003382 ORTHO05D003930 4.0e-12 75.9 126 38.1
Sabra05G0113000 Salix brachista HOM05D003382 ORTHO05D003930 1.2e-11 74.3 78 50.0
Nn1g04747 Nelumbo nucifera HOM05D003382 ORTHO05D003930 5.8e-11 72.0 79 48.1
BolC3t20205H Brassica oleracea HOM05D003382 ORTHO05D003930 2.7e-08 63.2 41 68.3
Solyc01g020150.3 Solanum lycopersicum HOM05D003382 ORTHO05D003930 7.8e-08 61.6 30 86.7
Gohir.A01G125200 Gossypium hirsutum HOM05D001631 ORTHO05D001591 1.5e-06 57.4 141 27.7


User provided reference genes

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