Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 1.4e-69 266.2 132 100.0
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 7.0e-13 77.8 38 94.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 9.1e-13 77.4 44 79.5
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.6e-12 76.6 44 79.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 2.0e-12 76.3 44 79.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-12 76.3 44 79.5
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-12 76.3 44 79.5
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.6e-12 75.9 44 77.3
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.5e-12 75.5 44 77.3
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 3.5e-12 75.5 38 89.5
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.5e-12 75.5 40 82.5
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 3.5e-12 75.5 44 77.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.5e-12 75.1 44 72.7
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 4.5e-12 75.1 44 75.0
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 4.5e-12 75.1 44 75.0
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.9e-12 74.7 44 77.3
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 5.9e-12 74.7 44 77.3
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.9e-12 74.7 54 61.1
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 7.7e-12 74.3 44 75.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 7.7e-12 74.3 44 75.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 7.7e-12 74.3 38 86.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 7.7e-12 74.3 38 86.8
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 7.7e-12 74.3 38 86.8
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 7.7e-12 74.3 44 77.3
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 7.7e-12 74.3 44 77.3
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 7.7e-12 74.3 44 75.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.0e-11 73.9 44 75.0
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.0e-11 73.9 44 72.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.0e-11 73.9 38 86.8
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.0e-11 73.9 38 86.8
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.0e-11 73.9 38 86.8
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-11 73.6 36 91.7
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.3e-11 73.6 44 72.7
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.3e-11 73.6 44 72.7
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.3e-11 73.6 38 84.2
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.3e-11 73.6 46 76.1
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.3e-11 73.6 44 72.7
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.3e-11 73.6 38 84.2
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.3e-11 73.6 44 72.7
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.7e-11 73.2 44 68.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.7e-11 73.2 38 84.2
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.7e-11 73.2 44 72.7
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.7e-11 73.2 44 72.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.7e-11 73.2 44 72.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.7e-11 73.2 44 75.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.7e-11 73.2 46 69.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.2e-11 72.8 44 72.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.2e-11 72.8 44 72.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.2e-11 72.8 44 77.3
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.2e-11 72.8 38 84.2
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.2e-11 72.8 44 77.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 2.9e-11 72.4 44 70.5
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 2.9e-11 72.4 44 72.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.9e-11 72.4 43 79.1
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.9e-11 72.4 44 77.3
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.9e-11 72.4 44 77.3
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.9e-11 72.4 44 75.0
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.9e-11 72.4 38 84.2
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.8e-11 72.0 44 72.7
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 3.8e-11 72.0 44 70.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.8e-11 72.0 44 72.7
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.8e-11 72.0 43 74.4
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.8e-11 72.0 44 70.5
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.8e-11 72.0 44 70.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 5.0e-11 71.6 44 75.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 5.0e-11 71.6 44 75.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 5.0e-11 71.6 44 72.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 5.0e-11 71.6 44 72.7
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 5.0e-11 71.6 44 72.7
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 5.0e-11 71.6 44 72.7
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 6.5e-11 71.2 44 70.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 6.5e-11 71.2 44 72.7
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 6.5e-11 71.2 44 70.5
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.5e-11 70.9 44 68.2
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 8.5e-11 70.9 44 72.7
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.1e-10 70.5 44 75.0
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.1e-10 70.5 44 70.5
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.5e-10 70.1 44 68.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.5e-10 70.1 44 70.5
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.9e-10 69.7 44 68.2
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.9e-10 69.7 44 72.7
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-10 69.3 44 72.7
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-10 69.3 44 72.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.5e-10 69.3 44 72.7
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.5e-10 69.3 44 72.7
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.5e-10 69.3 44 70.5
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.5e-10 69.3 44 72.7
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.2e-10 68.9 38 76.3
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 4.2e-10 68.6 44 70.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.2e-10 68.6 38 76.3
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.2e-10 68.6 38 76.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 70.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 70.5
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 70.5
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 70.5
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 70.5
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 70.5
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 68.2
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 5.5e-10 68.2 44 68.2
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.5e-10 68.2 57 59.6
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 5.5e-10 68.2 38 73.7
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 7.2e-10 67.8 44 70.5
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 7.2e-10 67.8 38 78.9
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 7.2e-10 67.8 44 70.5
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 7.2e-10 67.8 44 70.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 7.2e-10 67.8 44 70.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 7.2e-10 67.8 44 68.2
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 9.4e-10 67.4 44 65.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.2e-09 67.0 44 65.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.2e-09 67.0 38 76.3
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.2e-09 67.0 38 76.3
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.6e-09 66.6 44 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.1e-09 66.2 38 73.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.7e-09 65.9 44 68.2
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.7e-09 65.9 44 68.2
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.7e-09 65.9 87 43.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 3.6e-09 65.5 38 73.7
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 6.1e-09 64.7 44 63.6
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.1e-09 64.7 44 70.5
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 8.0e-09 64.3 44 65.9
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.0e-08 63.9 48 58.3
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.8e-08 63.2 44 63.6
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-08 63.2 44 63.6
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-08 63.2 44 63.6
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-08 63.2 44 63.6
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.8e-08 63.2 44 63.6
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.8e-08 63.2 44 63.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 5.2e-08 61.6 44 61.4
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 6.7e-08 61.2 38 71.1
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.2e-07 60.5 44 65.9
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 2.6e-07 59.3 37 70.3


User provided reference genes

Program Settings