Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.6e-197 693.0 458 100.0
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.4e-129 466.5 458 64.4
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 7.0e-129 464.9 469 62.5
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.2e-128 464.2 465 69.5
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.9e-126 456.8 469 67.6
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.7e-122 443.7 464 69.8
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.9e-122 443.0 471 60.5
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.4e-121 439.9 495 63.4
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.2e-121 439.5 468 60.3
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.2e-121 439.5 468 60.3
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.0e-120 435.3 501 62.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 8.6e-119 431.4 469 58.4
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.9e-118 430.3 459 67.3
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.6e-117 427.2 460 57.4
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.1e-116 424.5 534 56.2
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.1e-116 422.9 465 55.9
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.2e-115 421.0 458 56.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.6e-115 419.9 458 64.4
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 2.4e-113 413.3 498 59.8
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 7.1e-113 411.8 458 55.9
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.3e-111 407.5 474 54.9
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.3e-111 406.8 461 59.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.0e-111 406.4 464 64.7
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.5e-110 403.3 461 59.2
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.5e-110 403.3 466 55.2
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 9.5e-110 401.4 463 55.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 2.1e-109 400.2 459 59.9
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.8e-109 399.8 466 66.3
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 5.2e-108 395.6 461 54.7
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 5.2e-108 395.6 469 63.5
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.8e-108 395.2 467 57.4
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 5.8e-107 392.1 462 61.5
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.2e-106 390.2 472 53.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.9e-106 389.8 482 54.6
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 3.8e-106 389.4 455 55.8
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.8e-106 389.4 461 53.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 4.9e-106 389.0 465 56.1
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 8.4e-106 388.3 477 54.9
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.4e-105 386.7 463 55.7
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 5.4e-105 385.6 458 55.2
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 9.2e-105 384.8 464 58.0
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.6e-104 384.0 482 54.6
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.6e-104 384.0 469 51.4
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.1e-104 383.6 472 59.5
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.7e-104 383.3 477 53.7
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 6.0e-104 382.1 487 53.8
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.7e-103 380.6 464 55.4
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.7e-103 380.6 467 52.7
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.9e-103 379.4 472 53.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.9e-103 379.4 455 60.7
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 5.1e-103 379.0 473 63.0
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 6.6e-103 378.6 473 52.2
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.5e-102 377.5 464 55.0
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.5e-102 377.5 471 56.3
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.5e-102 376.7 490 51.4
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 4.3e-102 375.9 455 53.4
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.6e-101 374.0 469 65.7
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.6e-101 374.0 474 56.3
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.8e-101 373.2 457 59.1
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 4.7e-101 372.5 499 49.7
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 1.4e-100 370.9 475 54.7
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.8e-100 370.5 461 52.1
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 9.0e-100 368.2 481 57.2
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.2e-99 367.9 491 54.8
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.5e-99 367.5 472 57.2
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.4e-99 366.3 462 56.9
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.6e-99 365.2 464 49.8
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.3e-98 364.4 470 51.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.9e-97 360.5 468 64.1
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.9e-97 360.5 482 50.0
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 7.1e-97 358.6 480 49.8
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 7.1e-97 358.6 496 48.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 8.7e-95 351.7 478 50.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 3.3e-94 349.7 458 50.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.3e-93 347.8 484 57.9
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.8e-93 346.7 462 55.6
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.8e-92 344.0 467 53.3
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 2.4e-92 343.6 470 61.9
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.0e-92 342.8 424 54.5
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.2e-91 341.3 467 53.5
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 2.0e-91 340.5 460 56.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.3e-90 337.8 464 54.1
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 2.9e-90 336.7 475 51.2
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 3.8e-90 336.3 467 53.3
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 4.9e-90 335.9 462 52.8
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 6.4e-90 335.5 461 52.3
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.4e-89 334.3 485 48.7
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 4.2e-89 332.8 464 48.5
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 7.9e-88 328.6 459 57.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.0e-87 328.2 470 50.2
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.0e-87 328.2 487 49.7
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.3e-87 327.8 474 47.9
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.8e-87 327.4 478 54.4
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 2.3e-87 327.0 471 49.7
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.1e-87 325.9 470 47.0
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 8.7e-87 325.1 468 48.7
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 8.7e-87 325.1 464 54.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.3e-86 322.8 483 52.8
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 7.4e-86 322.0 470 54.7
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 7.4e-86 322.0 233 73.0
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 7.4e-86 322.0 458 53.1
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 9.6e-86 321.6 465 54.4
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 6.2e-85 318.9 471 54.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 8.1e-85 318.5 465 58.3
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.4e-84 317.0 471 45.4
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.5e-83 314.3 482 44.6
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 4.5e-83 312.8 457 47.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 5.8e-83 312.4 467 50.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 7.6e-83 312.0 487 44.4
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 9.9e-83 311.6 469 44.8
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.8e-82 309.7 464 55.2
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.4e-82 308.9 459 46.2
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-81 308.1 479 46.3
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.9e-81 307.4 476 45.8
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 2.4e-81 307.0 480 46.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.2e-81 306.6 482 57.7
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.2e-81 306.6 468 56.0
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 5.5e-81 305.8 480 46.2
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.5e-81 305.8 476 44.7
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 9.3e-81 305.1 473 46.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.5e-80 303.1 469 45.6
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.0e-79 301.6 468 48.3
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 8.7e-79 298.5 474 51.3
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-78 298.1 465 46.0
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-78 298.1 465 46.0
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.1e-78 298.1 465 46.0
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.5e-78 297.7 484 45.9
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.9e-78 297.4 232 68.5
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 9.0e-76 288.5 471 48.6
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.0e-76 288.5 452 46.9
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 4.5e-75 286.2 488 45.5
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.0e-74 285.0 455 47.9
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 6.5e-74 282.3 465 49.2
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 8.4e-74 282.0 497 53.9
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.1e-73 281.6 466 49.6
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 3.2e-73 280.0 397 46.1
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.7e-72 276.9 478 43.5
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-70 271.6 481 43.5
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 5.7e-70 269.2 482 43.2
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.8e-68 264.2 468 43.2
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.5e-59 233.0 493 41.0
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.7e-56 223.0 485 39.0
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 3.0e-55 220.3 489 38.9
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.9e-55 219.9 469 42.6
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.9e-55 219.9 469 42.6
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-54 218.4 469 42.4
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 9.1e-52 208.8 464 43.8
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.2e-51 208.4 369 43.9
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.0e-50 205.3 476 42.4
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 2.2e-50 204.1 468 42.9
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 3.3e-46 190.3 152 67.1
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.5e-41 174.9 381 39.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 6.1e-40 169.5 460 33.5
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.0e-38 164.5 489 39.3
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.1e-36 158.7 176 54.0
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 7.7e-35 152.5 480 36.9
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.3e-34 151.8 374 36.4
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.1e-28 130.6 87 69.0
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 5.5e-25 119.8 100 63.0
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.8e-23 114.8 131 42.7
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 7.5e-22 109.4 130 53.8
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 4.9e-21 106.7 124 53.2
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 4.9e-21 106.7 124 53.2
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.6e-19 101.7 89 64.0
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 4.5e-19 100.1 142 39.4
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.5e-17 94.4 120 57.5
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.1e-16 91.3 86 57.0
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 3.6e-16 90.5 93 61.3
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 8.0e-16 89.4 121 51.2
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 2.9e-13 80.9 220 30.5
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 4.9e-13 80.1 135 41.5
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 6.4e-13 79.7 135 41.5
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 8.3e-13 79.3 125 45.6
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.1e-12 79.0 67 55.2
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 6.0e-11 73.2 62 67.7
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 8.6e-10 69.3 106 39.6
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.4e-07 62.0 48 72.9
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 2.0e-06 58.2 127 30.7
SMO361G0460 Selaginella moellendorffii HOM05D002258 ORTHO05D002539 9.8e-06 55.8 142 29.6


User provided reference genes

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