Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2647 Acer truncatum HOM05D000810 ORTHO05D003737 3.4e-43 177.9 90 100.0
Atru.chr1.2653_Atru.chr1.2654 Acer truncatum HOM05D000810 ORTHO05D003737 2.1e-37 158.7 89 89.9
Ciclev10030613m.g Citrus clementina HOM05D000810 ORTHO05D003737 3.3e-22 108.2 88 67.0
GSVIVG01029553001 Vitis vinifera HOM05D000810 ORTHO05D003737 8.4e-18 93.6 74 62.2
TWI75G0866 Tripterygium wilfordii HOM05D000810 ORTHO05D003737 4.2e-17 91.3 88 54.5
TWI12G0419 Tripterygium wilfordii HOM05D000810 ORTHO05D003737 7.1e-17 90.5 90 53.3
Thecc.06G056100 Theobroma cacao HOM05D000810 ORTHO05D003737 2.1e-16 89.0 89 56.2
Manes.06G179701 Manihot esculenta HOM05D000810 ORTHO05D003737 6.0e-16 87.4 90 53.3
Sabra08G0001900 Salix brachista HOM05D000810 ORTHO05D003737 1.0e-15 86.7 90 52.2
Cfa003438 Carpinus fangiana HOM05D000810 ORTHO05D003737 3.0e-15 85.1 89 51.7
Potri.008G004300 Populus trichocarpa HOM05D000810 ORTHO05D003737 1.1e-14 83.2 90 51.1
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.9e-14 82.4 88 53.4
PGR102G1419 Punica granatum HOM05D000810 ORTHO05D003737 1.9e-14 82.4 77 54.5
Gohir.A03G088700 Gossypium hirsutum HOM05D000810 ORTHO05D003737 5.6e-14 80.9 89 46.1
Gohir.D02G114000 Gossypium hirsutum HOM05D000810 ORTHO05D003737 5.6e-14 80.9 89 46.1
Gorai.005G128800 Gossypium raimondii HOM05D000810 ORTHO05D003737 5.6e-14 80.9 89 46.1
Haze_16184 Corylus avellana HOM05D000810 ORTHO05D003737 9.6e-14 80.1 89 47.2
Actinidia21890 Actinidia chinensis HOM05D000810 ORTHO05D003737 2.8e-13 78.6 90 50.0
CSS0002363 Camellia sinensis var. sinensis HOM05D000810 ORTHO05D003737 8.1e-13 77.0 89 49.4
RcHm_v2.0_Chr2g0149341 Rosa chinensis HOM05D000810 ORTHO05D003737 8.1e-13 77.0 74 56.8
QL05p088870 Quercus lobata HOM05D000810 ORTHO05D003737 1.1e-12 76.6 90 48.9
Cpa.g.sc176.3 Carica papaya HOM05D000810 ORTHO05D003737 1.8e-12 75.9 86 47.7
Actinidia38811 Actinidia chinensis HOM05D000810 ORTHO05D003737 2.4e-12 75.5 90 48.9
MD09G1165700 Malus domestica HOM05D000810 ORTHO05D003737 2.4e-12 75.5 74 52.7
MD17G1161900 Malus domestica HOM05D000810 ORTHO05D003737 2.4e-12 75.5 74 52.7
Nn8g40980 Nelumbo nucifera HOM05D000810 ORTHO05D003737 2.0e-11 72.4 85 49.4
Cc04_g00050 Coffea canephora HOM05D000810 ORTHO05D003737 2.6e-11 72.0 89 44.9
vmacro18740 Vaccinium macrocarpon HOM05D000810 ORTHO05D003737 3.4e-11 71.6 90 45.6
TAR625G0247 Trochodendron aralioides HOM05D000810 ORTHO05D003737 5.8e-11 70.9 70 50.0
CiPaw.07G195000 Carya illinoinensis HOM05D000810 ORTHO05D003737 9.9e-11 70.1 69 53.6
FAN02G1409 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.3e-10 69.7 74 52.7
Oeu049629.1 Olea europaea HOM05D000810 ORTHO05D003737 1.3e-10 69.7 76 43.4
Rhsim08G0250700 Rhododendron simsii HOM05D000810 ORTHO05D003737 1.3e-10 69.7 88 46.6
PSO079G0035 Papaver somniferum HOM05D000810 ORTHO05D003737 2.2e-10 68.9 83 45.8
PSO423G0285 Papaver somniferum HOM05D000810 ORTHO05D003737 2.2e-10 68.9 86 44.2
Prupe.3G023300 Prunus persica HOM05D000810 ORTHO05D003737 2.9e-10 68.6 67 52.2
FvH4_6g36910 Fragaria vesca HOM05D000810 ORTHO05D003737 6.4e-10 67.4 74 51.4
FAN09G0580 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.1e-09 66.6 74 51.4
Eucgr.F04032 Eucalyptus grandis HOM05D000810 ORTHO05D003737 1.4e-09 66.2 89 38.2
Aqoxy7G02728 Aquilegia oxysepala HOM05D000810 ORTHO05D003737 5.4e-09 64.3 74 44.6
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 5.4e-09 64.3 74 50.0
Dinv20332 Davidia involucrata HOM05D000810 ORTHO05D003737 7.1e-09 63.9 51 62.7
CANSAT01G1333 Cannabis sativa HOM05D000810 ORTHO05D003737 1.6e-08 62.8 82 42.7
Sed0026498 Sechium edule HOM05D000810 ORTHO05D003737 6.0e-08 60.8 74 45.9
GSVIVG01031557001 Vitis vinifera HOM05D000810 ORTHO05D003737 7.8e-08 60.5 68 45.6
CiPaw.08G033900 Carya illinoinensis HOM05D000810 ORTHO05D003737 1.0e-07 60.1 69 46.4
QL11p004807 Quercus lobata HOM05D000810 ORTHO05D003737 1.7e-07 59.3 70 45.7
Dinv26444 Davidia involucrata HOM05D000810 ORTHO05D003737 3.0e-07 58.5 74 40.5
Hma1.2p1_0517F.1_g170840 Hydrangea macrophylla HOM05D000810 ORTHO05D003737 3.0e-07 58.5 90 42.2
Dinv25403 Davidia involucrata HOM05D000810 ORTHO05D003737 3.9e-07 58.2 73 42.5
CiPaw.01G208700 Carya illinoinensis HOM05D000810 ORTHO05D003737 5.1e-07 57.8 89 42.7
Peaxi162Scf00038g02643 Petunia axillaris HOM05D000810 ORTHO05D003737 6.6e-07 57.4 81 39.5
Oeu038102.1 Olea europaea HOM05D000810 ORTHO05D003737 8.7e-07 57.0 69 42.0
ClCG07G014670 Citrullus lanatus HOM05D000810 ORTHO05D003737 1.1e-06 56.6 76 42.1
Carub.0003s2018 Capsella rubella HOM05D000810 ORTHO05D003737 1.5e-06 56.2 76 43.4
Aa31LG8G7060 Aethionema arabicum HOM05D000810 ORTHO05D003737 1.9e-06 55.8 68 38.2
AT3G20250 Arabidopsis thaliana HOM05D000810 ORTHO05D003737 2.5e-06 55.5 76 42.1
Sopen03g041720 Solanum pennellii HOM05D000810 ORTHO05D003737 3.3e-06 55.1 81 38.3
AL3G33950 Arabidopsis lyrata HOM05D000810 ORTHO05D003737 5.6e-06 54.3 76 42.1
MSTRG.10873 Avicennia marina HOM05D000810 ORTHO05D003737 7.3e-06 53.9 75 38.7
VMungo1309G1597 Vigna mungo HOM05D000810 ORTHO05D003737 9.6e-06 53.5 73 38.4


User provided reference genes

Program Settings