Gene: Carub.0003s2018

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s2018
  • Transcript Identifier Carub.0003s2018.1
  • Gene Type Coding gene
  • Location scaffold_3 : 7238156-7241817 : negative

Gene Family Information

  • ID HOM05D000810
  • #Genes/#Species 729/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s2018.v1.1
  • pacid 39240074
  • synonym Carubv10012910m.g

Descriptions

  • Description PTHR12537:SF74 - PUMILIO HOMOLOG 5-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061158
ISO
PLAZA Integrative Orthology3'-UTR-mediated mRNA destabilization AT3G20250
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G20250
GO:0009819
ISO
PLAZA Integrative Orthologydrought recovery AT3G20250
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT3G20250
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G20250

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding AT3G20250
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G20250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G20250
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G20250

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001313 Pumilio RNA-binding repeat
IPR033712 Pumilio, RNA binding domain
IPR016024 Armadillo-type fold
IPR011989 Armadillo-like helical
Mapman id Description
35.1 not assigned.annotated