Gene: AT3G20250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G20250
  • Transcript Identifier AT3G20250.2
  • Gene Type Coding gene
  • Location Chr3 : 7059098-7062660 : negative

Gene Family Information

  • ID HOM05D000810
  • #Genes/#Species 729/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G20250.2
  • symbol PUM5
  • Alias APUM5,pumilio 5
  • uniprot Q9LJX4

Descriptions

  • Description pumilio 5
  • Computational description pumilio 5 (PUM5); FUNCTIONS IN: RNA binding, binding; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 6 (TAIR:AT4G25880.1); Has 4771 Blast hits to 2450 proteins in 259 species: Archae - 0; Bacteria - 10; Metazoa - 1074; Fungi - 1429; Plants - 1087; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0061158
IMP
IBA
Gene Ontology3'-UTR-mediated mRNA destabilization1 2
GO:0010608
IBA
Gene Ontologyposttranscriptional regulation of gene expression1
GO:0009819
IMP
Gene Ontologydrought recovery3
GO:0009651
IMP
Gene Ontologyresponse to salt stress3
GO:0006970
IMP
Gene Ontologyresponse to osmotic stress3
GO:0051607
IMP
Gene Ontologydefense response to virus2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 4 5
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003727
IDA
Gene Ontologysingle-stranded RNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol6
GO:0005773
IDA
GOA Databasevacuole
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1
GO:0000325
HDA
Gene Ontologyplant-type vacuole7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033712 Pumilio, RNA binding domain
IPR001313 Pumilio RNA-binding repeat
IPR016024 Armadillo-type fold
IPR011989 Armadillo-like helical
Mapman id Description
35.1 not assigned.annotated