Gene: Sopen03g041720

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g041720
  • Transcript Identifier Sopen03g041720.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 75295712-75303341 : positive

Gene Family Information

  • ID HOM05D000810
  • #Genes/#Species 729/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g041720.1

Descriptions

  • Description Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 5 (PUM5) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: vacuole | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 6
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061158
ISO
PLAZA Integrative Orthology3'-UTR-mediated mRNA destabilization AT3G20250
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G20250
GO:0009819
ISO
PLAZA Integrative Orthologydrought recovery AT3G20250
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT3G20250
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G20250

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding AT3G20250
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G20250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G20250
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G20250

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR033712 Pumilio, RNA binding domain
IPR011989 Armadillo-like helical
IPR001313 Pumilio RNA-binding repeat
IPR016024 Armadillo-type fold
Mapman id Description
35.1 not assigned.annotated