Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2049 Acer truncatum HOM05D005216 ORTHO05D006453 2.4e-78 295.4 146 100.0
Atru.chr1.35 Acer truncatum HOM05D005216 ORTHO05D000124 6.5e-20 101.3 182 42.9
Atru.chr8.582 Acer truncatum HOM05D005216 ORTHO05D006453 7.7e-13 77.8 74 59.5
QL05p016421 Quercus lobata HOM05D005216 ORTHO05D006453 5.0e-12 75.1 41 90.2
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 6.5e-12 74.7 37 100.0
Ciclev10025277m.g Citrus clementina HOM05D005216 ORTHO05D006453 6.5e-12 74.7 41 87.8
MBI01_g16587_MAGBIO Magnolia biondii HOM05D005216 ORTHO05D006453 1.1e-11 73.9 41 87.8
CiPaw.02G142800 Carya illinoinensis HOM05D005216 ORTHO05D006453 2.5e-11 72.8 41 87.8
GSVIVG01016904001 Vitis vinifera HOM05D005216 ORTHO05D006453 2.5e-11 72.8 41 85.4
MELO3C024409.2 Cucumis melo HOM05D005216 ORTHO05D006453 5.5e-11 71.6 41 87.8
Sed0006988 Sechium edule HOM05D005216 ORTHO05D006453 9.4e-11 70.9 41 85.4
TAR636G1794 Trochodendron aralioides HOM05D005216 ORTHO05D006453 9.4e-11 70.9 41 82.9
Hma1.2p1_0388F.1_g142040 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 1.2e-10 70.5 41 85.4
Hma1.2p1_0388F.1_g142050 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 1.2e-10 70.5 41 85.4
Cpa.g.sc131.17 Carica papaya HOM05D005216 ORTHO05D006453 1.6e-10 70.1 41 82.9
COL.COLO4_30571 Corchorus olitorius HOM05D005216 ORTHO05D006453 1.6e-10 70.1 41 82.9
Dinv37942 Davidia involucrata HOM05D005216 ORTHO05D006453 1.6e-10 70.1 41 85.4
Cfa003614 Carpinus fangiana HOM05D005216 ORTHO05D006453 2.7e-10 69.3 41 82.9
Haze_15911 Corylus avellana HOM05D005216 ORTHO05D006453 2.7e-10 69.3 41 82.9
Gohir.D10G065200 Gossypium hirsutum HOM05D005216 ORTHO05D006453 2.7e-10 69.3 41 80.5
Gorai.011G069100 Gossypium raimondii HOM05D005216 ORTHO05D006453 2.7e-10 69.3 41 80.5
Potri.001G195300 Populus trichocarpa HOM05D005216 ORTHO05D006453 3.6e-10 68.9 41 80.5
ClCG09G000480 Citrullus lanatus HOM05D005216 ORTHO05D006453 4.7e-10 68.6 41 85.4
Actinidia21733 Actinidia chinensis HOM05D005216 ORTHO05D006453 6.1e-10 68.2 41 80.5
CsaV3_7G034980 Cucumis sativus L. HOM05D005216 ORTHO05D006453 6.1e-10 68.2 41 82.9
MD17G1179000 Malus domestica HOM05D005216 ORTHO05D006453 8.0e-10 67.8 62 61.3
Prupe.3G054000 Prunus persica HOM05D005216 ORTHO05D006453 8.0e-10 67.8 41 78.0
ATR0789G110 Amborella trichopoda HOM05D005216 ORTHO05D006453 1.0e-09 67.4 41 70.7
FAN09G2417 Fragaria x ananassa HOM05D005216 ORTHO05D006453 1.0e-09 67.4 62 58.1
Gohir.A10G063600 Gossypium hirsutum HOM05D005216 ORTHO05D006453 1.0e-09 67.4 41 78.0
Lj5A50G63 Lonicera japonica HOM05D005216 ORTHO05D006453 1.0e-09 67.4 41 78.0
Nn8g38966 Nelumbo nucifera HOM05D005216 ORTHO05D006453 1.0e-09 67.4 41 82.9
RcHm_v2.0_Chr2g0141991 Rosa chinensis HOM05D005216 ORTHO05D006453 1.0e-09 67.4 62 58.1
Duzib192G0447 Durio zibethinus HOM05D005216 ORTHO05D006453 1.4e-09 67.0 41 80.5
PSO210G6279 Papaver somniferum HOM05D005216 ORTHO05D006453 1.4e-09 67.0 41 80.5
Aqoxy7G03942 Aquilegia oxysepala HOM05D005216 ORTHO05D006453 1.8e-09 66.6 41 80.5
PSO210G0066 Papaver somniferum HOM05D005216 ORTHO05D006453 1.8e-09 66.6 41 80.5
Sabra01G0143000 Salix brachista HOM05D005216 ORTHO05D006453 1.8e-09 66.6 41 80.5
Eucgr.J02891 Eucalyptus grandis HOM05D005216 ORTHO05D006453 2.3e-09 66.2 41 75.6
FvH4_6g32800 Fragaria vesca HOM05D005216 ORTHO05D006453 2.3e-09 66.2 62 56.5
Lj3g0001017 Lotus japonicus HOM05D005216 ORTHO05D006453 3.0e-09 65.9 41 75.6
vmacro18831 Vaccinium macrocarpon HOM05D005216 ORTHO05D006453 3.0e-09 65.9 46 71.7
Manes.11G029600 Manihot esculenta HOM05D005216 ORTHO05D006453 5.2e-09 65.1 41 75.6
PGR102G1400 Punica granatum HOM05D005216 ORTHO05D006453 5.2e-09 65.1 41 75.6
Hund27772 Selenicereus undatus HOM05D005216 ORTHO05D006453 5.2e-09 65.1 46 69.6
Hund27776 Selenicereus undatus HOM05D005216 ORTHO05D006453 5.2e-09 65.1 46 69.6
BcaC05g28181 Brassica carinata HOM05D005216 ORTHO05D006453 6.7e-09 64.7 41 75.6
A05p27300 Brassica napus HOM05D005216 ORTHO05D006453 6.7e-09 64.7 41 75.6
C05p42210 Brassica napus HOM05D005216 ORTHO05D006453 6.7e-09 64.7 41 75.6
BolC5t32949H Brassica oleracea HOM05D005216 ORTHO05D006453 6.7e-09 64.7 41 75.6
BcaB06g26221 Brassica carinata HOM05D005216 ORTHO05D006453 1.2e-08 63.9 41 75.6
CANSAT56G3252 Cannabis sativa HOM05D005216 ORTHO05D006453 1.2e-08 63.9 41 68.3
Migut.I00980 Erythranthe guttata HOM05D005216 ORTHO05D006453 1.2e-08 63.9 41 73.2
Rhsim08G0230200 Rhododendron simsii HOM05D005216 ORTHO05D006453 1.2e-08 63.9 36 88.9
Thecc.06G105100 Theobroma cacao HOM05D005216 ORTHO05D006453 1.2e-08 63.9 41 78.0
TPR.G6542 Trifolium pratense HOM05D005216 ORTHO05D006453 1.2e-08 63.9 41 73.2
BraA05t21622Z Brassica rapa HOM05D005216 ORTHO05D006453 1.5e-08 63.5 41 73.2
Nitab4.5_0009106g0020 Nicotiana tabacum HOM05D005216 ORTHO05D006453 1.5e-08 63.5 41 73.2
Nitab4.5_0009613g0010 Nicotiana tabacum HOM05D005216 ORTHO05D006453 1.5e-08 63.5 41 73.2
SGA_v2.0_scaffold71G23736 Striga asiatica HOM05D005216 ORTHO05D006453 1.5e-08 63.5 41 70.7
Psat5g294680 Pisum sativum HOM05D005216 ORTHO05D006453 2.0e-08 63.2 43 69.8
CSS0048704 Camellia sinensis var. sinensis HOM05D005216 ORTHO05D006453 2.6e-08 62.8 41 75.6
Carub.0003s2133 Capsella rubella HOM05D005216 ORTHO05D006453 2.6e-08 62.8 41 73.2
Lsat_1_v5_gn_1_36600 Lactuca sativa HOM05D005216 ORTHO05D006453 2.6e-08 62.8 41 73.2
Medtr2g100500 Medicago truncatula HOM05D005216 ORTHO05D006453 2.6e-08 62.8 41 70.7
AUR62023880 Chenopodium quinoa HOM05D005216 ORTHO05D006453 3.3e-08 62.4 41 70.7
DCAR_031420 Daucus carota HOM05D005216 ORTHO05D006453 3.3e-08 62.4 41 68.3
Eucgr.J02895 Eucalyptus grandis HOM05D005216 ORTHO05D006453 3.3e-08 62.4 41 73.2
Oeu052821.2 Olea europaea HOM05D005216 ORTHO05D006453 3.3e-08 62.4 41 73.2
Peaxi162Scf00038g01234 Petunia axillaris HOM05D005216 ORTHO05D006453 3.3e-08 62.4 41 70.7
Aa31LG8G8010 Aethionema arabicum HOM05D005216 ORTHO05D006453 4.4e-08 62.0 41 73.2
AT3G21300 Arabidopsis thaliana HOM05D005216 ORTHO05D006453 4.4e-08 62.0 41 73.2
EL10Ac9g21148 Beta vulgaris HOM05D005216 ORTHO05D006453 4.4e-08 62.0 41 70.7
ECA247G0411 Erigeron canadensis HOM05D005216 ORTHO05D006453 5.7e-08 61.6 41 70.7
ECA247G0873 Erigeron canadensis HOM05D005216 ORTHO05D006453 5.7e-08 61.6 41 70.7
Thhalv10020447m.g Eutrema salsugineum HOM05D005216 ORTHO05D006453 5.7e-08 61.6 41 73.2
Atru.chr9.1294 Acer truncatum HOM05D000370 ORTHO05D007301 7.5e-08 61.2 104 44.2
Ah.01g017050 Amaranthus hybridus HOM05D005216 ORTHO05D006453 7.5e-08 61.2 41 68.3
MSTRG.22612 Avicennia marina HOM05D005216 ORTHO05D006453 7.5e-08 61.2 41 68.3
Ca_01178_v3 Cicer arietinum L. HOM05D005216 ORTHO05D006453 7.5e-08 61.2 41 70.7
Phvul.005G161800 Phaseolus vulgaris HOM05D005216 ORTHO05D006453 7.5e-08 61.2 41 70.7
Sp3g19360 Schrenkiella parvula HOM05D005216 ORTHO05D006453 7.5e-08 61.2 41 70.7
Sc15g0000030 Simmondsia chinensis HOM05D005216 ORTHO05D006453 9.7e-08 60.8 41 65.9
AL3G35360 Arabidopsis lyrata HOM05D005216 ORTHO05D006453 1.3e-07 60.5 41 70.7
Os01g0193600 Oryza sativa ssp. japonica HOM05D005216 ORTHO05D006453 1.3e-07 60.5 41 68.3
Solyc03g121260.3 Solanum lycopersicum HOM05D005216 ORTHO05D006453 1.7e-07 60.1 41 70.7
Sopen03g040070 Solanum pennellii HOM05D005216 ORTHO05D006453 1.7e-07 60.1 41 70.7
unitig_32.g11583 Utricularia gibba HOM05D005216 ORTHO05D006453 1.7e-07 60.1 58 55.2
CAN.G1143.37 Capsicum annuum HOM05D005216 ORTHO05D006453 2.2e-07 59.7 41 70.7
HanXRQChr04g0095951 Helianthus annuus HOM05D005216 ORTHO05D006453 2.2e-07 59.7 41 68.3
HPP92_002841 Vanilla planifolia HOM05D005216 ORTHO05D006453 2.8e-07 59.3 41 68.3
arahy.Tifrunner.gnm1.ann1.CL3NUC Arachis hypogaea HOM05D005216 ORTHO05D006453 3.7e-07 58.9 41 70.7
AUR62022292 Chenopodium quinoa HOM05D005216 ORTHO05D006453 4.8e-07 58.5 41 68.3
CARHR097230 Cardamine hirsuta HOM05D005216 ORTHO05D006453 6.3e-07 58.2 41 68.3
Zm00001eb121120 Zea mays HOM05D005216 ORTHO05D006453 8.2e-07 57.8 41 63.4
PGSC0003DMG400002513 Solanum tuberosum HOM05D005216 ORTHO05D006453 1.4e-06 57.0 121 35.5
Glyma.13G352500 Glycine max HOM05D005216 ORTHO05D006453 2.4e-06 56.2 41 68.3
VMungo1080G0616 Vigna mungo HOM05D005216 ORTHO05D006453 2.4e-06 56.2 41 63.4
Cc04_g02310 Coffea canephora HOM05D005216 ORTHO05D006453 3.1e-06 55.8 41 68.3
arahy.Tifrunner.gnm1.ann1.412K95 Arachis hypogaea HOM05D005216 ORTHO05D006453 4.1e-06 55.5 41 68.3
Glyma.15G022200 Glycine max HOM05D005216 ORTHO05D006453 4.1e-06 55.5 41 68.3
Lalb_Chr14g0372921 Lupinus albus HOM05D005216 ORTHO05D006453 7.0e-06 54.7 41 63.4


User provided reference genes

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