Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 0.0e+00 1836.6 945 100.0
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 0.0e+00 1175.6 985 66.6
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 1.5e-295 1019.6 981 59.4
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 1.3e-294 1016.5 1003 58.0
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 1.1e-293 1013.4 1003 57.8
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 1.7e-286 989.6 983 57.6
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 6.0e-284 981.1 1012 56.6
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 2.0e-279 966.1 996 56.8
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 4.9e-278 961.4 1066 54.0
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 7.1e-277 957.6 1021 54.8
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.7e-275 951.0 915 58.5
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.6e-273 946.4 864 61.2
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.6e-273 946.4 862 61.1
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 6.9e-272 941.0 1002 54.5
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 3.8e-270 935.3 933 56.7
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 1.1e-269 933.7 984 56.1
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 3.1e-264 915.6 1010 53.0
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 5.9e-263 911.4 861 58.7
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.7e-262 909.8 972 54.2
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.1e-261 907.1 932 55.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.4e-261 906.7 959 55.1
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 7.2e-261 904.4 983 53.3
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.6e-260 903.3 959 55.2
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.7e-260 902.5 1009 53.3
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 3.9e-259 898.7 996 52.5
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 4.3e-258 895.2 992 52.5
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 5.7e-258 894.8 961 54.2
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 5.3e-256 888.3 941 54.7
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.2e-255 887.1 971 53.2
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 2.6e-255 885.9 981 53.1
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 5.9e-255 884.8 969 53.8
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 7.7e-255 884.4 981 52.9
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 2.2e-254 882.9 981 52.8
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 2.9e-254 882.5 964 54.6
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 2.9e-254 882.5 971 54.2
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 3.8e-254 882.1 979 53.5
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 2.5e-253 879.4 968 53.6
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 7.4e-250 867.8 970 52.8
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.8e-248 863.2 930 54.5
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 2.4e-248 862.8 960 53.3
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 1.0e-246 857.4 972 52.0
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.3e-246 857.1 967 52.7
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 6.5e-246 854.7 1006 51.2
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.4e-245 853.6 981 52.0
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 2.5e-245 852.8 1002 50.6
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.2e-244 850.5 917 54.4
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 1.6e-244 850.1 961 52.3
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 2.7e-244 849.4 950 52.7
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.4e-243 847.0 886 53.8
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.3e-243 846.3 976 51.6
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.0e-243 845.9 964 53.1
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.9e-243 845.5 1004 50.9
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 3.9e-243 845.5 996 51.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 2.0e-242 843.2 982 51.7
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 4.5e-239 832.0 943 50.5
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 5.0e-238 828.6 897 53.6
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 6.1e-236 821.6 944 51.6
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 6.1e-236 821.6 957 52.1
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.4e-235 820.5 991 50.2
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 6.7e-235 818.1 942 51.2
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 9.7e-234 814.3 972 50.7
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 9.1e-232 807.7 932 49.4
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 7.7e-231 804.7 944 49.8
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.3e-230 803.9 930 51.3
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 7.2e-229 798.1 850 54.8
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.6e-228 797.0 935 50.5
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 8.0e-228 794.7 955 50.1
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 1.2e-226 790.8 903 51.6
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 3.4e-226 789.3 936 49.3
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 1.7e-225 786.9 938 51.1
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 4.8e-225 785.4 997 48.8
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 6.3e-225 785.0 926 49.7
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.7e-222 776.9 929 48.0
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.3e-222 776.5 883 51.4
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.9e-222 776.2 990 47.8
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.2e-220 770.8 980 47.6
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 2.1e-220 770.0 867 51.0
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 5.2e-219 765.4 945 48.3
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 6.8e-219 765.0 858 50.9
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 8.9e-219 764.6 726 58.5
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.6e-218 763.1 952 46.7
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 9.8e-218 761.1 747 57.0
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 7.0e-216 755.0 931 47.7
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.9e-214 749.6 931 47.4
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.8e-212 743.0 884 50.6
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 4.9e-209 732.3 969 45.6
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.0e-207 726.9 869 48.8
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 6.0e-207 725.3 877 49.9
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 3.3e-205 719.5 912 48.0
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.0e-202 710.3 964 46.4
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.1e-198 695.7 704 57.2
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 8.9e-195 684.9 693 55.8
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 6.4e-193 678.7 997 44.5
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 5.1e-190 669.1 858 47.1
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 2.1e-188 663.7 893 45.6
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.1e-181 641.3 623 57.0
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 6.9e-179 632.1 599 55.8
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 9.9e-178 628.2 867 44.9
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 6.4e-177 625.5 933 43.0
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 8.4e-177 625.2 700 53.1
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 3.2e-168 596.7 699 49.8
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 6.0e-151 539.3 1049 35.3
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.0e-151 539.3 950 37.8
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.3e-148 529.3 957 37.2
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.9e-137 493.8 968 35.6
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 2.2e-132 477.6 797 37.4
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.3e-126 457.6 483 51.8
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 1.6e-106 391.7 1133 29.9
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 4.9e-100 370.2 368 54.1
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.2e-60 238.4 943 26.5
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 7.1e-51 206.8 524 29.6
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.1e-48 199.5 388 31.7
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 6.5e-44 183.7 287 42.5
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 2.1e-42 178.7 393 31.0
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 4.5e-29 134.4 133 54.1
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 4.6e-26 124.4 317 29.7
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.5e-24 119.4 429 23.5
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 2.4e-22 112.1 202 39.1
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.0e-21 109.0 476 23.5
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.7e-20 105.9 178 40.4
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 3.9e-17 94.7 86 62.8
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 8.2e-15 87.0 110 50.0


User provided reference genes

Program Settings