Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 8.2e-136 487.3 284 100.0
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 8.6e-93 344.4 289 74.0
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 4.3e-92 342.0 289 70.9
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 4.0e-90 335.5 285 73.0
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 3.7e-88 328.9 289 70.6
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 7.0e-87 324.7 295 70.8
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 8.6e-85 317.8 298 66.8
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 2.5e-84 316.2 293 69.6
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.3e-84 315.5 286 68.5
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 9.5e-84 314.3 291 67.7
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 3.6e-83 312.4 310 67.1
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 6.2e-83 311.6 285 67.7
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 1.1e-82 310.8 297 62.3
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 6.8e-82 308.1 292 63.0
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 6.8e-82 308.1 250 70.0
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.2e-81 307.4 316 62.7
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 1.2e-81 307.4 297 63.6
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 2.0e-81 306.6 238 70.2
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 2.6e-81 306.2 274 70.8
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 4.4e-81 305.4 295 68.5
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 5.8e-81 305.1 290 64.5
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 9.8e-81 304.3 288 67.0
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 3.7e-80 302.4 312 64.7
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 3.7e-80 302.4 303 60.7
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 4.9e-80 302.0 291 66.0
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.1e-79 300.8 293 64.8
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 1.1e-79 300.8 293 64.8
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 1.4e-79 300.4 294 63.3
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 1.4e-79 300.4 302 64.2
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 1.4e-79 300.4 302 64.9
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 4.1e-79 298.9 296 67.6
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 5.4e-79 298.5 304 62.5
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 5.4e-79 298.5 209 79.4
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 9.2e-79 297.7 285 63.5
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 9.2e-79 297.7 297 64.0
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.2e-78 297.4 301 65.1
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 3.5e-78 295.8 276 64.9
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 3.5e-78 295.8 289 67.1
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 4.6e-78 295.4 289 61.9
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.3e-77 293.9 302 59.6
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 3.9e-77 292.4 306 62.1
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 5.1e-77 292.0 296 66.6
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 6.6e-77 291.6 250 68.4
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 1.5e-76 290.4 306 64.4
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 3.3e-76 289.3 296 62.2
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 4.3e-76 288.9 301 64.5
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 4.3e-76 288.9 289 66.4
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 4.3e-76 288.9 306 64.1
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 7.3e-76 288.1 300 64.0
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 1.2e-75 287.3 289 66.1
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.6e-75 287.0 310 63.2
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 2.1e-75 286.6 309 60.8
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 3.6e-75 285.8 293 64.2
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.4e-74 283.9 307 61.9
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 2.3e-74 283.1 331 58.6
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 8.9e-74 281.2 294 63.3
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 1.5e-73 280.4 316 61.4
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 3.4e-73 279.3 295 65.4
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.3e-72 277.3 291 61.9
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 2.4e-71 273.1 297 64.6
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 2.4e-71 273.1 291 62.5
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 3.2e-71 272.7 293 61.1
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 4.1e-71 272.3 216 69.0
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 3.0e-69 266.2 209 66.5
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 3.9e-69 265.8 182 78.0
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 1.5e-68 263.8 295 59.0
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 1.5e-68 263.8 191 74.3
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 1.5e-68 263.8 217 65.4
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.5e-68 263.8 299 59.5
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 7.3e-68 261.5 206 68.4
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 9.6e-68 261.2 288 58.7
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 9.6e-68 261.2 282 57.1
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 4.7e-67 258.8 293 59.7
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 6.2e-67 258.5 309 54.4
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 8.1e-67 258.1 306 58.8
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 1.8e-66 256.9 247 66.0
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 2.6e-65 253.1 182 75.3
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 4.4e-65 252.3 204 66.7
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 4.4e-65 252.3 279 59.9
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 4.9e-64 248.8 173 78.0
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.4e-63 247.3 173 77.5
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 2.4e-63 246.5 267 54.3
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 2.4e-63 246.5 182 74.7
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 3.2e-63 246.1 204 64.2
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 1.2e-62 244.2 204 65.7
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 1.2e-62 244.2 204 65.7
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 2.1e-62 243.4 204 65.7
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 2.1e-62 243.4 204 65.7
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 4.6e-62 242.3 280 58.9
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 4.6e-62 242.3 184 72.3
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 7.8e-62 241.5 212 64.2
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 7.8e-62 241.5 204 63.7
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.3e-61 240.7 204 63.2
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.3e-61 240.7 204 63.7
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 1.3e-61 240.7 208 63.0
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 6.6e-61 238.4 212 63.2
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 1.5e-60 237.3 212 62.7
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 2.5e-60 236.5 212 63.7
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 2.5e-60 236.5 205 62.9
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.6e-59 233.8 296 53.4
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-57 226.5 201 65.2
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 5.8e-57 225.3 208 61.1
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 7.6e-57 224.9 212 61.8
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 1.7e-56 223.8 201 64.7
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-56 223.4 210 62.4
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 4.9e-56 222.2 246 64.2
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-55 219.9 215 60.5
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 3.2e-55 219.5 181 61.3
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.3e-53 213.4 183 65.6
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 4.3e-52 209.1 199 62.8
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 9.6e-52 208.0 181 60.2
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 9.6e-52 208.0 181 60.2
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 1.6e-51 207.2 199 62.3
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 2.8e-51 206.5 222 55.4
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 1.8e-50 203.8 212 57.5
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 3.1e-50 203.0 199 67.3
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.0e-49 200.3 162 67.9
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.6e-46 190.7 215 54.0
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.3e-45 186.8 187 60.4
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.3e-45 186.8 180 62.2
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.9e-45 186.0 187 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 5.1e-45 185.7 189 56.1
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.7e-45 185.3 187 59.9
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.7e-45 185.3 187 59.9
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.7e-45 185.3 187 59.9
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.7e-45 185.3 187 59.9
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-44 184.1 187 59.9
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-44 183.7 187 59.9
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-44 183.3 187 59.4
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-44 182.6 187 59.4
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 7.4e-44 181.8 217 55.3
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.6e-43 180.6 187 58.8
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.8e-43 179.1 187 58.8
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 6.2e-43 178.7 182 56.0
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-42 177.6 161 64.0
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.2e-41 174.5 190 56.8
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.3e-40 171.0 117 72.6
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 3.8e-40 169.5 125 69.6
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 1.1e-39 167.9 174 59.2
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-39 167.2 187 56.1
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 7.9e-38 161.8 193 49.7
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 5.1e-37 159.1 101 77.2
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 9.6e-36 154.8 101 76.2
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 1.3e-35 154.5 79 96.2
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 6.3e-35 152.1 184 50.5
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 4.1e-34 149.4 114 70.2
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 5.3e-34 149.1 114 67.5
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-32 143.7 187 50.3
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.5e-31 139.0 148 59.5
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 7.4e-28 128.6 151 56.3
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.1e-23 114.8 295 39.3
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 4.6e-22 109.4 165 43.0
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 7.9e-22 108.6 83 66.3
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 1.8e-21 107.5 74 66.2
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 9.7e-20 101.7 119 52.9
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 2.2e-19 100.5 164 47.6
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 2.0e-17 94.0 125 46.4
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 1.2e-14 84.7 117 50.4
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 3.0e-13 80.1 171 35.1
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 1.7e-11 74.3 140 38.6
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.1e-10 71.6 71 52.1
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 5.3e-10 69.3 77 45.5
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 3.8e-08 63.2 168 34.5
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 8.5e-08 62.0 34 79.4
TAR065G0002 Trochodendron aralioides HOM05D003639 ORTHO05D004246 3.2e-07 60.1 154 49.4


User provided reference genes

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