Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.0e-122 441.4 219 100.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.7e-107 391.3 219 85.8
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.1e-84 317.0 219 69.9
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.2e-81 307.0 219 67.6
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.2e-81 307.0 219 67.6
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.3e-80 303.5 219 66.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.9e-79 299.7 215 66.0
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.2e-79 298.9 215 63.7
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 9.3e-79 297.4 219 64.8
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.7e-78 295.8 215 63.7
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 6.0e-78 294.7 219 63.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 6.0e-78 294.7 215 63.7
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.3e-77 293.5 215 63.3
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.7e-77 293.1 218 62.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.7e-77 293.1 215 63.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 3.9e-77 292.0 215 64.2
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 3.9e-77 292.0 218 62.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.9e-77 292.0 218 61.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.1e-76 290.4 215 63.7
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.9e-76 289.7 215 64.2
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.3e-76 288.9 217 62.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 7.4e-76 287.7 215 61.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 7.4e-76 287.7 217 63.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.1e-75 286.2 225 60.4
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.1e-75 286.2 218 60.1
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 3.6e-75 285.4 215 60.5
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 3.6e-75 285.4 215 63.3
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.6e-75 285.4 215 60.9
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-75 284.6 218 59.6
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 6.2e-75 284.6 218 61.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 8.1e-75 284.3 225 61.3
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 8.1e-75 284.3 215 62.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.4e-74 283.5 218 60.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.4e-74 283.5 215 60.5
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.4e-74 283.5 225 61.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.4e-74 283.5 219 62.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-74 283.5 218 59.6
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 2.4e-74 282.7 216 60.6
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.3e-74 281.6 215 60.0
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 9.0e-74 280.8 215 60.5
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 9.0e-74 280.8 233 59.7
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 9.0e-74 280.8 215 60.0
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.0e-73 279.6 218 58.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.6e-73 279.3 219 60.3
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 4.5e-73 278.5 215 58.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 7.6e-73 277.7 215 59.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 9.9e-73 277.3 221 59.7
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.3e-72 276.9 221 60.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.7e-72 276.6 252 54.4
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.7e-72 276.6 252 54.4
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.9e-72 275.8 215 59.5
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.9e-72 275.8 218 59.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 3.8e-72 275.4 224 58.5
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 6.4e-72 274.6 214 59.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 6.4e-72 274.6 221 59.7
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 8.4e-72 274.2 215 59.1
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 8.4e-72 274.2 215 59.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 8.4e-72 274.2 215 59.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.1e-71 273.9 215 60.5
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.4e-71 273.5 220 57.7
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.9e-71 273.1 216 61.1
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 2.4e-71 272.7 218 60.6
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.2e-71 271.9 217 58.1
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.2e-71 271.9 218 58.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.2e-71 271.9 243 57.2
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 5.5e-71 271.6 211 57.3
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.6e-70 270.0 215 58.1
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.9e-70 267.7 215 55.8
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 7.9e-70 267.7 215 58.6
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.9e-70 267.7 215 59.1
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-69 266.9 215 57.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.3e-69 266.9 213 57.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.8e-69 266.5 214 61.2
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.8e-69 266.5 215 55.3
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.0e-69 265.8 219 57.1
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.5e-68 262.7 260 51.5
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 5.6e-68 261.5 235 54.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-67 260.4 217 55.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.1e-67 259.6 215 54.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.8e-67 259.2 215 56.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.7e-67 258.8 210 57.1
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.8e-67 258.5 217 54.8
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 4.8e-67 258.5 217 54.8
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.8e-67 258.5 217 54.8
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 4.8e-67 258.5 210 57.6
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 6.2e-67 258.1 217 55.3
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-66 257.3 215 54.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.1e-66 257.3 246 52.0
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.4e-66 256.9 217 54.8
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-66 256.1 215 54.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 5.3e-66 255.0 217 55.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.0e-65 253.1 215 54.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.6e-65 252.7 215 54.4
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.4e-65 252.3 215 53.5
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.0e-64 250.8 210 57.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.5e-63 246.1 208 55.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 7.1e-63 244.6 213 53.5
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.1e-62 243.0 215 53.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.7e-62 242.7 225 47.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.6e-62 241.9 192 57.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.0e-61 240.7 218 47.2
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.8e-61 240.0 206 58.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-59 233.8 212 51.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.2e-59 231.1 218 48.2
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 6.9e-58 228.0 155 68.4
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.0e-56 224.2 156 64.7
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.0e-56 224.2 156 64.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.7e-56 223.4 215 46.5
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.7e-56 223.4 219 46.6
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.1e-55 220.7 161 65.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.4e-55 220.3 155 64.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.6e-54 215.7 164 62.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 4.6e-54 215.3 215 47.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-51 206.1 209 47.4
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 8.2e-51 204.5 143 67.1
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.2e-51 204.5 184 50.5
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-50 204.1 187 51.3
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.4e-50 203.8 184 55.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-50 203.0 209 46.4
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-49 200.7 221 50.2
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 3.4e-49 199.1 144 66.0
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.5e-49 198.7 212 44.8
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.9e-49 198.4 214 47.7
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.5e-48 194.5 171 53.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 5.5e-47 191.8 157 55.4
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.7e-46 189.5 138 64.5
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.6e-46 189.1 161 55.3
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.0e-45 187.6 219 39.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 4.4e-44 182.2 161 51.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 9.7e-44 181.0 216 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 6.3e-43 178.3 193 43.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-42 177.6 215 41.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.4e-42 177.2 218 38.1
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 4.1e-42 175.6 132 61.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-39 166.8 153 51.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 3.2e-39 166.0 120 62.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.5e-39 165.2 145 51.7
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-38 163.7 213 41.8
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.1e-38 163.3 133 56.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.8e-35 152.1 122 55.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 5.0e-32 142.1 120 54.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-32 141.7 125 52.8
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 2.5e-31 139.8 117 56.4
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.1e-30 136.7 155 43.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-30 136.3 134 45.5
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-29 133.3 111 55.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 2.9e-24 116.3 101 52.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-21 105.9 91 56.0
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-15 87.8 74 52.7
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.5e-15 87.4 56 66.1
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 4.7e-14 82.4 74 47.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-13 79.3 145 31.0
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 2.2e-11 73.6 52 59.6
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.8e-10 70.5 81 42.0
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.4e-10 68.9 64 43.8
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.5e-09 66.2 48 54.2
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.9e-09 65.5 64 48.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 8.6e-08 61.6 45 66.7
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 8.6e-08 61.6 45 66.7
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 8.6e-08 61.6 44 68.2


User provided reference genes

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